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1.
Acc Chem Res ; 51(3): 769-777, 2018 03 20.
Artigo em Inglês | MEDLINE | ID: mdl-29517230

RESUMO

Many enzymes that produce or transform small molecules such as O2, H2, and CO2 embed inorganic cofactors based on transition metals. Their active site, where the chemical reaction occurs, is buried in and protected by the protein matrix, and connected to the solvent in several ways: chains of redox cofactors mediate long-range electron transfer; static or dynamic tunnels guide the substrate, product and inhibitors; amino acids and water molecules transfer protons. The catalytic mechanism of these enzymes is therefore delocalized over the protein and involves many different steps, some of which determine the response of the enzyme under conditions of stress (extreme redox conditions, presence of inhibitors, light), the catalytic rates in the two directions of the reaction and their ratio (the "catalytic bias"). Understanding all the steps in the catalytic cycle, including those that occur on sites of the protein that are remote from the active site, requires a combination of biochemical, structural, spectroscopic, theoretical, and kinetic methods. Here we argue that kinetics should be used to the fullest extent, by extracting quantitative information from the comparison of data and kinetic models and by exploring the combination of experimental kinetics and theoretical chemistry. In studies of these catalytic mechanisms, direct electrochemistry, the technique which we use and contribute to develop, has become unescapable. It simply consists in monitoring the changes in activity of an enzyme that is wired to an electrode by recording an electric current. We have described kinetic models that can be used to make sense of these data and to learn about various aspects of the mechanism that are difficult to probe using more conventional methods: long-range electron transfer, diffusion along gas channels, redox-driven (in)activations, active site chemistry and photoreactivity under conditions of turnover. In this Account, we highlight a few results that illustrate our approach. We describe how electrochemistry can be used to monitor substrate and inhibitor diffusion along the gas channels of hydrogenases and we discuss how the kinetics of intramolecular diffusion relates to global properties such as resistance to oxygen and catalytic bias. The kinetics and/or thermodynamics of intramolecular electron transfer may also affect the catalytic bias, the catalytic potentials on either side of the equilibrium potential, and the overpotentials for catalysis (defined as the difference between the catalytic potentials and the open circuit potential). This is understood by modeling the shape of the steady-state catalytic response of the enzyme. Other determinants of the catalytic rate, such as domain motions, have been probed by examining the transient catalytic response recorded at fast scan rates. Last, we show that combining electrochemical investigations and MD, DFT, and TD-DFT calculations is an original way of probing the reactivity of the H-cluster of hydrogenase, in particular its reactions with CO, O2, and light. This approach contrasts with the usual strategy which aims at stabilizing species that are presumed to be catalytic intermediates, and determining their structure using spectroscopic or structural methods.


Assuntos
Técnicas Eletroquímicas , Hidrogenase/química , Sulfito Oxidase/química , Luz Solar , Biocatálise , Teoria da Densidade Funcional , Difusão , Eletrodos , Humanos , Hidrogenase/metabolismo , Simulação de Dinâmica Molecular , Sulfito Oxidase/metabolismo
2.
J Am Chem Soc ; 137(39): 12580-7, 2015 Oct 07.
Artigo em Inglês | MEDLINE | ID: mdl-26352172

RESUMO

The mechanism of reaction of FeFe hydrogenases with oxygen has been debated. It is complex, apparently very dependent on the details of the protein structure, and difficult to study using conventional kinetic techniques. Here we build on our recent work on the anaerobic inactivation of the enzyme [Fourmond et al. Nat. Chem. 2014, 4, 336-342] to propose and apply a new method for studying this reaction. Using electrochemical measurements of the turnover rate of hydrogenase, we could resolve the first steps of the inhibition reaction and accurately determine their rates. We show that the two most studied FeFe hydrogenases, from Chlamydomonas reinhardtii and Clostridium acetobutylicum, react with O2 according to the same mechanism, despite the fact that the former is much more O2 sensitive than the latter. Unlike often assumed, both enzymes are reversibly inhibited by a short exposure to O2. This will have to be considered to elucidate the mechanism of inhibition, before any prediction can be made regarding which mutations will improve oxygen resistance. We hope that the approach described herein will prove useful in this respect.


Assuntos
Hidrogenase/antagonistas & inibidores , Hidrogenase/metabolismo , Proteínas Ferro-Enxofre/antagonistas & inibidores , Proteínas Ferro-Enxofre/metabolismo , Modelos Moleculares , Oxigênio/química , Domínio Catalítico , Eletroquímica , Hidrogenase/química , Proteínas Ferro-Enxofre/química , Cinética
3.
Langmuir ; 30(15): 4501-8, 2014 Apr 22.
Artigo em Inglês | MEDLINE | ID: mdl-24673288

RESUMO

Localized "electroclick" was achieved on azido-terminated self-assembled monolayers using Scanning Electrochemical Microscopy (SECM) in feedback mode, in which the substrate is not electrically connected (unbiased conditions). The method allows both the local immobilization of diverse functional moieties and the monitoring of each modification step at a micrometer scale. Conditions of the "click" coupling reaction were optimized especially to avoid the deposit of metallic copper by the choice of a specific ligand to stabilize the Cu(I) species. The catalytic efficiency in localized "electroclick" reaction of Cu(II)TMPA (TMPA: tris(2-pyridylmethyl)amine) as the "click" catalyst was compared with a derivative containing an alkyne group Cu(II)6eTMPA, the same molecule playing the role of the catalyst and the substrate. Evidences for surface self-catalysis propagation are demonstrated through SECM imaging showing a random 2D progression of the catalytic modification.


Assuntos
Microscopia/métodos , Catálise
4.
Chemistry ; 18(2): 594-602, 2012 Jan 09.
Artigo em Inglês | MEDLINE | ID: mdl-22162129

RESUMO

A novel and general strategy for the immobilisation of functional objects onto electrodes is described. The concept is based on the addition of two pendant ethynyl groups onto a bis(pyridyl)amine derivative, which acts as a molecular platform. This platform is pre-functionalised with an N(3)-tagged object of interest by Huisgen cycloaddition to one of the ethynyl groups in biphasic conditions. Hence, when complexed by Cu(II) , this molecular-object holder can be immobilised, by a "self-induced electroclick", through the second ethynyl group onto N(3)-alkanethiol self-assembled monolayers on a gold electrode. Two different functional groups, a redox innocent ((CH(2))(3)-Ph) and an electrochemical probe (ferrocene), were immobilised by following this strategy. The in situ electrochemical grafting showed, for both systems, that the kinetics of immobilisation is fast. The voltammetric characterisation of the surface-tagged functionalised copper complexes indicated that a good surface coverage was achieved and that a moderately fast electron-transfer reaction occurs. Remarkably, in the case of the redox-active ferrocenyl-immobilised system, the electrochemical response highlighted the involvement of the copper ion of the platform in the kinetics of the electron transfer to the ferrocene moiety. This platform is a promising candidate for applications in surface addressing in areas as diverse as biology and materials.


Assuntos
Complexos de Coordenação/química , Cobre/química , Técnicas Eletroquímicas/instrumentação , Compostos Ferrosos/química , Ciclização , Eletrodos , Ouro/química , Cinética , Metalocenos , Compostos de Sulfidrila/química , Propriedades de Superfície
5.
Chem Commun (Camb) ; 58(48): 6785-6788, 2022 Jun 14.
Artigo em Inglês | MEDLINE | ID: mdl-35612874

RESUMO

We present here a novel strategy based on the covalent grafting of a C-functionalized Ni-cyclam complex onto glassy carbon to achieve heterogeneous electrocatalytic CO2 reduction in neutral water at low overpotential (-500 mV vs. NHE), with moderate turnover number (TON = 454), high selectivity (85% CO produced) and good faradaic efficiency (56% CO). Direct comparison with the N-functionalized Ni-cyclam analogue highlights the benefits of this approach in terms of CO2 electroreduction.

6.
Nat Chem ; 9(1): 88-95, 2017 01.
Artigo em Inglês | MEDLINE | ID: mdl-27995927

RESUMO

FeFe hydrogenases are the most efficient H2-producing enzymes. However, inactivation by O2 remains an obstacle that prevents them being used in many biotechnological devices. Here, we combine electrochemistry, site-directed mutagenesis, molecular dynamics and quantum chemical calculations to uncover the molecular mechanism of O2 diffusion within the enzyme and its reactions at the active site. We propose that the partial reversibility of the reaction with O2 results from the four-electron reduction of O2 to water. The third electron/proton transfer step is the bottleneck for water production, competing with formation of a highly reactive OH radical and hydroxylated cysteine. The rapid delivery of electrons and protons to the active site is therefore crucial to prevent the accumulation of these aggressive species during prolonged O2 exposure. These findings should provide important clues for the design of hydrogenase mutants with increased resistance to oxidative damage.


Assuntos
Hidrogênio/química , Hidrogenase/química , Oxigênio/química , Catálise , Clostridium/enzimologia , Difusão , Técnicas Eletroquímicas , Hidrogenase/genética , Simulação de Dinâmica Molecular , Mutagênese Sítio-Dirigida , Oxirredução , Teoria Quântica
7.
ChemSusChem ; 7(2): 638-43, 2014 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-24127363

RESUMO

Iron-thiolate complexes of the type [Fe2 (µ-bdt)(CO)6-x P(OMe3 )x ] (bdt=S2 C6 H4 =benzenedithiolate, x≤2) are simplified models of iron-iron hydrogenase enzymes. Recently, we have shown that these water-insoluble organometallic complexes, when included into micelles formed by sodium dodecyl sulfate (SDS), are good catalysts for the electrochemical production of hydrogen in aqueous solutions at pH<6. We herein report that the all-CO derivative [Fe2 (µ-bdt)(CO)6 ] (1), owing to its comparatively low reduction potential, is also a robust molecular catalyst for visible-light-driven production of H2 in aqueous SDS solutions at pH 10.5. Irradiation at λ=455 nm of a system consisting of complex 1, Eosin Y as a sensitizer, and triethylamine as an electron donor produced up to 0.86 mL of H2 in 4.5 h, corresponding to a turnover number of 117 mol of H2 per mol of catalyst. In the presence of a large excess of sensitizer, the production of H2 lasted for more than 30 h, stressing the relative stability of complex 1 under the photocatalytic conditions used herein. Thermodynamic considerations and UV/Vis spectroscopy experiments suggest that the catalytic cycle begins with the photo-driven reduction of complex 1. The reduced intermediate reacts with a proton source to yield iron hydride. Subsequent reduction and protonation steps produce H2 , regenerating the starting complex. As a result, the iron-thiolate complex 1 is a versatile proton reduction catalyst that can utilize either solar or electrical energy inputs, providing a starting point for the construction of noble metal-free molecular systems for renewable H2 production.


Assuntos
Materiais Biomiméticos/química , Domínio Catalítico , Hidrogênio/química , Hidrogenase/química , Proteínas Ferro-Enxofre/química , Micelas , Processos Fotoquímicos , Catálise , Soluções
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