Thrombospondin type-1 domain-containing 7A-associated membranous nephropathy after resection of rectal cancer: a case report.

BACKGROUND: Thrombospondin type-1 domain-containing 7A (THSD7A) is a target antigen in idiopathic membranous nephropathy (MN). Patients with THSD7A-associated MN are known to have a high possibility of developing malignancy. However, there are few case reports on THSD7A-associated MN with malignancy, and details of its characteristics have not been clarified thoroughly. Here, we report the case of a 77-year-old male patient who was diagnosed with THSD7A-associated MN after resection of rectal cancer. CASE PRESENTATION: A 77-year-old man who had developed bilateral peripheral edema, persistent proteinuria, and nephrotic syndrome was admitted to our hospital. He was diagnosed with MN based on a renal biopsy 3 years after resection of rectal cancer, and positive staining for THSD7A in both kidney and rectal cancer tissues suggested that these two diseases were related. Furthermore, THSD7A staining of metastatic lymph nodes revealed deposition of THSD7A in the secondary lymph follicles and sinus. Recurrence of rectal cancer was suspected; however, tumor recurrence was not observed on chest and abdominal computed tomography (CT) and colonoscopy. There was no lymph node enlargement. The patient was kept on observation with supportive therapy. Consequently, although nephrotic syndrome persisted, obvious recurrence and metastasis of the primary tumor were not observed. CONCLUSION: This is the first case in which pathological examination results suggested that THSD7A-associated MN was caused by rectal cancer. Based on the reports of THSD7A-associated MN with malignancy and the pathogenesis of MN, lymph node metastasis may be a risk for cancer-related MN.

Robust Nanowrapping of Reduced Graphene Oxide by Metal-Organic Network Films between Fe Ions and Tetra(Catechol-Substituted) Porphyrin.

We found the utilization of porphyrin-based metal-organic network films composed of tetra(catechol-substituted)porphyrin (cPor) and Fe ions for robust wrapping materials of graphene oxide (GO), which can keep the dispersion state under the chemical reduction of GO to reduced graphene oxide (rGO) in water. The tetra(catechol-substituted)porphyrin (cPor) was designed for soft-wrapping methods because the aromatic porphyrin moieties can be strongly adsorbed onto the surface of GO or rGO via both π-π interactions and the catechol-Fe coordination network formation. The GO sheets covered with the cPor-Fe films were reduced chemically in water under retention of the wrapped nanostructure of the cPor-Fe/GO sheets. The obtained rGO composites after chemical reduction are characterized by using UV-vis absorption, Raman, and X-ray photoelectron spectroscopy (XPS) spectra, as well as thermogravimetric analysis and energy-dispersive X-ray spectroscopy (EDX). XPS and EDX spectra showed the presence of Fe species, which originates from the coordinated Fe-catechol nodes in the wrapped cPor-Fe films. The wrapped rGO sheets could be easily handled in water because of their high solubility therein and exhibits electric conductivity. In dynamic light scattering analysis, the average diameter of rGO composites before and after reduction changed slightly from 419 ± 309 to 663 ± 697 nm, indicating that the chemical reduction is not significantly influenced by the size of the rGO composite or the solubility. It is expected that the soft wrapping cPor-Fe/rGO should employ the applications to prepare functional materials such as modified electrodes, catalysts, energy-storage materials, and electronic devices.

Carbon-free production of 2-deoxy-scyllo-inosose (DOI) in cyanobacterium Synechococcus elongatus PCC 7942.

Owing to their photosynthetic capabilities, there is increasing interest in utilizing cyanobacteria to convert solar energy into biomass. 2-Deoxy-scyllo-inosose (DOI) is a valuable starting material for the benzene-free synthesis of catechol and other benzenoids. DOI synthase (DOIS) is responsible for the formation of DOI from d-glucose-6-phosphate (G6P) in the biosynthesis of 2-deoxystreptamine-containing aminoglycoside antibiotics such as neomycin and butirosin. DOI fermentation using a recombinant Escherichia coli strain has been reported, although a carbon source is necessary for high-yield DOI production. We constructed DOI-producing cyanobacteria toward carbon-free and sustainable DOI production. A DOIS gene derived from the butirosin producer strain Bacillus circulans (btrC) was introduced and expressed in the cyanobacterium Synechococcus elongatus PCC 7942. We ultimately succeeded in producing 400 mg/L of DOI in S. elongatus without using a carbon source. DOI production by cyanobacteria represents a novel and efficient approach for producing benzenoids from G6P synthesized by photosynthesis.

Controlling the Molecular Direction of Dinuclear Ruthenium Complexes on HOPG Surface through Noncovalent Bonding.

We synthesized three types of binuclear Ru complexes (1-3) that contain pyrene anchors for the adsorption of 1-3 onto nanocarbon materials via noncovalent π-π interactions, in order to investigate their adsorption onto and their desorption from highly ordered pyrolytic graphite (HOPG). The adsorption saturation for 1 (6.22 pmol/cm2), 2 (2.83 pmol/cm2), and 3 (3.53 pmol/cm2) on HOPG was obtained from Langmuir isotherms. The desorption rate from HOPG electrodes decreased in the order 3 (2.4 × 10-5 s-1) > 2 (1.4 × 10-5 s-1) ≫ 1 (1.8 × 10-6 s-1). These results indicate that the number of pyrene anchors and their position of substitution in such complexes strongly affect the desorption behavior. However, neither the free energy of adsorption (ΔGads) nor the heterogeneous electron-transfer rate (kET) showed any significant differences among 1-3, albeit that the surface morphologies of the modified HOPG substrates showed domain structures that were characteristic for each Ru complex. In the case of 3, the average height changed from ∼2 to ∼4 nm upon increasing the concentration of the solution of 3 that was used for the surface modification. In contrast, the height for 1 and 2 remained constant (1.5-2 nm) upon increasing the concentration of the complexes in the corresponding solutions. While the molecular orientation of the Ru-Ru axis of 3 relative to the HOPG surface normal changed from parallel to perpendicular, the Ru-Ru axis in 1 and 2 remained parallel, which leads to an increased stability of 1 and 2.

Energy-Storage Applications for a pH Gradient between Two Benzimidazole-Ligated Ruthenium Complexes That Engage in Proton-Coupled Electron-Transfer Reactions in Solution.

The judicious selection of pairs of benzimidazole-ligated ruthenium complexes allowed the construction of a rechargeable proton-coupled electron-transfer (PCET)-type redox battery. A series of ruthenium(II) and -(III) complexes were synthesized that contain substituted benzimidazoles that engage in PCET reactions. The formation of intramolecular Ru-C cyclometalation bonds stabilized the resulting ruthenium(III) complexes, in which pKa values of the imino N-H protons on the benzimidazoles are usually lower than those for the corresponding ruthenium(II) complexes. As a proof-of-concept study for a solution redox battery based on such PCET reactions, the charging/discharging cycles of several pairs of ruthenium complexes were examined by chronopotentiometry in an H-type device with half-cells separated by a Nafion membrane in unbuffered CH3CN/H2O (1/1, v/v) containing 0.1 M NaCl. During the charging/discharging cycles, the pH value of the solution gradually changed accompanied by a change of the open-circuit potential (OCP). The changes for the OCP and pH value of the solution in the anodic and cathodic half-cells were in good agreement with the predicted values from the Pourbaix diagrams for the pairs of ruthenium complexes used. Accordingly, the careful selection of pairs of ruthenium complexes with a sufficient potential gradient and a suitably large pKa difference is crucial: the charge generated between the two ruthenium complexes changes the OCP and the pH difference between the two cells in an unbuffered solution, given that the PCET reactions occur at both electrodes and that discharging leads to the original state. Because the electric energy is stored as a pH gradient between the half-cells, new possibilities for PCET-type rocking-chair redox batteries arise.

Controlling the Direction of the Molecular Axis of Rod-Shaped Binuclear Ruthenium Complexes on Single-Walled Carbon Nanotubes.

We report the synthesis of a mixed-valence ruthenium complex, bearing pyrene moieties on one side of the ligands as anchor groups. Composites consisting of mixed-valence ruthenium complexes and SWNTs were prepared by noncovalent π-π interactions between the SWNT surface and the pyrene anchors of the Ru complex. In these composites, the long axis of the Ru complexes was aligned in parallel to the principal direction of the SWNT. The optimized conformation of these complexes on the SWNT surface was calculated by molecular mechanics. The composites were examined by UV/Vis absorption and FT-IR spectroscopy, XPS, and SEM analysis. Furthermore, their electrochemical properties were evaluated. Cyclic voltammograms of the composites showed reversible oxidation waves at peak oxidation potentials (Epox ) = 0.86 and 1.08 V versus Fc(+) /Fc, which were assigned to the Ru(II) -Ru(II) /Ru(II) -Ru(III) and the Ru(II) -Ru(III) /Ru(III) -Ru(III) oxidation events of the dinuclear ruthenium complex, respectively. Based on these observations, we concluded that the electrochemical properties and mixed-valence state of the dinuclear ruthenium complexes were preserved upon attachment to the SWNT surface.

Photoresponsive Molecular Memory Films Composed of Sequentially Assembled Heterolayers Containing Ruthenium Complexes.

Photoresponsive molecular memory films were fabricated by a layer-by-layer (LbL) assembling of two dinuclear Ru complexes with tetrapodal phosphonate anchors, containing either 2,3,5,6-tetra(2-pyridyl)pyrazine or 1,2,4,5-tetra(2-pyridyl)benzene as a bridging ligand (Ru-NP and Ru-CP, respectively), using zirconium phosphonate to link the layers. Various types of multilayer homo- and heterostructures were constructed. In the multilayer heterofilms such as ITO||(Ru-NP)m |(Ru-CP)n , the difference in redox potentials between Ru-NP and Ru-CP layers was approximately 0.7 V, which induced a potential gradient determined by the sequence of the layers. In the ITO||(Ru-NP)m |(Ru-CP)n multilayer heterofilms, the direct electron transfer (ET) from the outer Ru-CP layers to the ITO were observed to be blocked for m>2, and charge trapping in the outer Ru-CP layers became evident from the appearance of an intervalence charge transfer (IVCT) band at 1140 nm from the formation of the mixed-valent state of Ru-CP units, resulting from the reductive ET mediation of the inner Ru-NP layers. Therefore, the charging/discharging ("1"and "0") states in the outer Ru-CP layers could be addressed and interconverted by applying potential pulses between -0.5 and +0.7 V. The two states could be read out by the direction of the photocurrent (anodic or cathodic). The molecular heterolayer films thus represent a typical example of a photoresponsive memory device; that is, the writing process may be achieved by the applied potential (-0.5 or +0.7 V), while the readout process is achieved by measuring the direction of the photocurrent (anodic or cathodic). Sequence-sensitive multilayer heterofilms, using redox-active complexes as building blocks, thus demonstrate great potential for the design of molecular functional devices.

Synthesis and Single-Molecule Conductance Study of Redox-Active Ruthenium Complexes with Pyridyl and Dihydrobenzo[b]thiophene Anchoring Groups.

The ancillary ligands 4'-(4-pyridyl)-2,2':6',2''-terpyridine and 4'-(2,3-dihydrobenzo[b]thiophene)-2,2'-6',2"-terpyridine were used to synthesize two series of mono- and dinuclear ruthenium complexes differing in their lengths and anchoring groups. The electrochemical and single-molecular conductance properties of these two series of ruthenium complexes were studied experimentally by means of cyclic voltammetry and the scanning tunneling microscopy-break junction technique (STM-BJ) and theoretically by means of density functional theory (DFT). Cyclic voltammetry data showed clear redox peaks corresponding to both the metal- and ligand-related redox reactions. Single-molecular conductance demonstrated an exponential decay of the molecular conductance with the increase in molecular length for both the series of ruthenium complexes, with decay constants of ßPY =2.07±0.1 nm(-1) and ßBT =2.16±0.1 nm(-1) , respectively. The contact resistance of complexes with 2,3-dihydrobenzo[b]thiophene (BT) anchoring groups is found to be smaller than the contact resistance of ruthenium complexes with pyridine (PY) anchors. DFT calculations support the experimental results and provided additional information on the electronic structure and charge transport properties in those metal|ruthenium complex|metal junctions.

Controlling the Adsorption of Ruthenium Complexes on Carbon Surfaces through Noncovalent Bonding with Pyrene Anchors: An Electrochemical Study.

Surface modifications of carbon nanomaterials, such as graphene or carbon nanotubes, through noncovalent π-π interactions between π-conjugated carbon surfaces and pyrene anchors have received much attention on account of the applications of these materials in organic electronic and sensor devices. Despite the rapidly expanding use of pyrene anchors, little is known about the number of pyrene groups required in order to achieve a stable attachment of molecules on nanocarbon surfaces. So far, systematic studies on such surface modifications through adsorption isotherms and desorption behavior of molecules still remain scarce. In this study, we have investigated the effect of the number of pyrene anchors in redox-active Ru complexes on their adsorption on carbon nanomaterials through noncovalent π-π interactions. The Ru(II/III) couple was used as a redox marker in order to determine the surface coverage on nanocarbon surfaces such as highly oriented pyrolytic graphite (HOPG), single-walled carbon nanotubes (SWCNTs), and multiwalled carbon nanotubes (MWCNTs). The amount of surface coverage as well as the kinetic stability of the Ru complexes was thereby observed to be directly proportional to the number of pyrene groups present in the ligands. The desorption rate from HOPG electrode increased in the order Ru-1 with eight pyrene groups (k = 2.0 × 10(-5) s(-1)) < Ru-2 with four pyrenes (4.1 × 10(-5) s(-1)) < Ru-3 with two pyrenes (6.8 × 10(-5) s(-1)) ≪ Ru-4 with one pyrene (4.1 × 10(-3) s(-1)). Furthermore, the electrochemical polymerization of the Ru complex with four pyrene groups proceeded more efficiently compared to complexes with one or two pyrene groups. As a consequence, compounds having more than two and/or optimally four pyrene groups revealed a stable adsorption on the nanocarbon surfaces. The heterogeneous electron transfer rate between the Ru complex, Ru-2, and the carbon nanomaterials increased in the order SWCNTs (kET = 1.3 s(-1)) < MWCNTs (ϕ = 5-9 nm) (kET = 4.0 s(-1)) < MWCNTs (ϕ = 110-170 nm) (kET = 14.9 s(-1)) < HOPG (kET = 110 s(-1)).

Effects of Fe cations in ruthenium-complex multilayers fabricated by a layer-by-layer method.

Molecular multilayers were fabricated using a Ru complex containing Fe cations on an indium tin oxide surface to control the properties of the Ru-complex multilayers such as the multilayer orientation and the electron transport. The Ru-complex multilayer films containing Fe cations were thicker than those containing Zr cations, which have been used previously. The electron transport properties of the multilayers containing Fe cations were evaluated. Solid-state sandwich cell measurements showed that the Ru-complex multilayer films containing Fe cations exhibited increased electron transport with a lower transport coefficient ß of 0.01 Å(-1), whereas those that contain Zr cations have ß âˆ¼ 0.07 Å(-1). Thus, Fe cations are effective in obtaining thicker Ru-complex layers with increased electron transport abilities.

Hybrids of copolymers of fluorene and C60 -carrying-carbazole with semiconducting single-walled carbon nanotubes.

Three different copolymers of C60 -carrying-carbazole and fluorene units with different copolymer composition ratios were designed and synthesized. On the basis of photoluminescence, atomic force microscopy, and Vis-NIR and Raman spectroscopic analysis, we found that these copolymers solubilize only semiconducting single-walled carbon nanotubes (sem-SWNTs) to form copolymer/sem-SWNT hybrids, in which energy transfer from the copolymer/C60 moieties to the SWNTs was revealed. By comparing two possible hybrid structures with molecular-mechanics simulations, the greatest stabilization was found when the C60 moieties lay on the sem-SWNT surfaces.

Soft nano-wrapping on graphene oxide by using metal-organic network films composed of tannic acid and Fe ions.

Graphene oxide (GO) nanosheets were easily covered with uniform metal-organic network films composed of tannic acid and Fe ions. The surface morphology of the wrapped GO sheets was elucidated using atomic force, scanning electron, and transmission electron microscopy measurements. The GO sheets covered with the TA-Fe films on a substrate were reduced chemically without the collapse of the wrapped nanostructure of the TA-Fe/GO sheets. The modified GO sheets covered with TA-Fe were highly stable in water and easy to handle, which made it possible for placing on a microelectrode array for conductivity measurements.

Assessment of metagenomic workflows using a newly constructed human gut microbiome mock community.

To quantify the biases introduced during human gut microbiome studies, analyzing an artificial mock community as the reference microbiome is indispensable. However, there are still limited resources for a mock community which well represents the human gut microbiome. Here, we constructed a novel mock community comprising the type strains of 18 major bacterial species in the human gut and assessed the influence of experimental and bioinformatics procedures on the 16S rRNA gene and shotgun metagenomic sequencing. We found that DNA extraction methods greatly affected the DNA yields and taxonomic composition of sequenced reads, and that some of the commonly used primers for 16S rRNA genes were prone to underestimate the abundance of some gut commensal taxa such as Erysipelotrichia, Verrucomicrobiota and Methanobacteriota. Binning of the assembled contigs of shotgun metagenomic sequences by MetaBAT2 produced phylogenetically consistent, less-contaminated bins with varied completeness. The ensemble approach of multiple binning tools by MetaWRAP can improve completeness but sometimes increases the contamination rate. Our benchmark study provides an important foundation for the interpretation of human gut microbiome data by providing means for standardization among gut microbiome data obtained with different methodologies and will facilitate further development of analytical methods.

Recognition and one-pot extraction of right- and left-handed semiconducting single-walled carbon nanotube enantiomers using fluorene-binaphthol chiral copolymers.

Synthesized single-walled carbon nanotubes (SWNTs) are mixtures of right- and left-handed helicity and their separation is an essential topic in nanocarbon science. In this paper, we describe the separation of right- and left-handed semiconducting SWNTs from as-produced SWNTs. Our strategy for this goal is simple: we designed copolymers composed of polyfluorene and chiral bulky moieties because polyfluorenes with long alkyl-chains are known to dissolve only semiconducting SWNTs and chiral binaphthol is a so-called BINAP family that possesses a powerful enantiomer sorting capability. In this study, we synthesized 12 copolymers, (9,9-dioctylfluorene-2,7-diyl)x((R)- or (S)-2,2'-dimethoxy-1,1'-binaphthalen-6,6-diyl)y, where x and y are copolymer composition ratios. It was found that, by a simple one-pot sonication method, the copolymers are able to extract either right- or left-handed semiconducting SWNT enantiomers with (6,5)- and (7,5)-enriched chirality. The separated materials were confirmed by circular dichroism, vis-near IR and photoluminescence spectroscopies. Interestingly, the copolymer showed inversion of SWNT enantiomer recognition at higher contents of the chiral binaphthol moiety. Molecular mechanics simulations reveal a cooperative effect between the degree of chirality and copolymer conformation to be responsible for these distinct characteristics of the extractions. This is the first example describing the rational design and synthesis of novel compounds for the recognition and simple sorting of right- and left-handed semiconducting SWNTs with a specific chirality.

Solvent-free luminescent organic liquids.

Illuminating! Isolation of a π-core by covalently attached flexible hydrocarbon chains has been employed to synthesize blue-emitting oligo(p-phenylenevinylene) (OPV) liquids with tunable viscosity and optical properties. A solvent-free, stable, white-light emitting ink/paint, which can be applied onto various surfaces and even onto LEDs, was made by blending of liquid OPVs with emissive solid dopants.

Rational concept to recognize/extract single-walled carbon nanotubes with a specific chirality.

Single-walled carbon nanotubes (SWNTs) have remarkable and unique electronic, mechanical, and thermal properties, which are closely related to their chiralities; thus, the chirality-selective recognition/extraction of the SWNTs is one of the central issues in nanotube science. However, any rational materials design enabling one to efficiently extract/solubilize pure SWNT with a desired chirality has yet not been demonstrated. Herein we report that certain chiral polyfluorene copolymers can well-recognize SWNTs with a certain chirality preferentially, leading to solubilization of specific chiral SWNTs. The chiral copolymers were prepared by the Ni(0)-catalyzed Yamamoto coupling reaction of 2,7-dibromo-9,9-di-n-decylfluorene and 2,7-dibromo-9,9-bis[(S)-(+)-2-methylbutyl]fluorene comonomers. The selectivity of the SWNT chirality was mainly determined by the relative fraction of the achiral and chiral side groups. By a molecular mechanics simulation, the cooperative interaction between the fluorene moiety, alkyl side chain, and graphene wall were responsible for the recognition/dissolution ability of SWNT chirality. This is a first example describing the rational design and synthesis of novel fluorene-based copolymers toward the recognition/extraction of targeted (n, m) chirality of the SWNTs.

Supramolecular hybrid of gold nanoparticles and semiconducting single-walled carbon nanotubes wrapped by a porphyrin-fluorene copolymer.

We describe the design, synthesis, and characterization of a supramolecular hybrid of gold nanometals and semiconducting single-walled carbon nanotubes (SWNTs) wrapped by a porphyrin-fluorene copolymer (1), as well as fabrication of a thin-film transistor (TFT) device using the hybrid. Photoluminescence mapping revealed that the copolymer selectively dissolved SWNTs with chirality indices of (8,6), (8,7), (9,7), (7,6), and (7,5); dissolution of (8,6), and (8,7) SWNTs was especially efficient. The solubilized SWNTs were connected to gold nanoparticles (AuNPs) via a coordination bond to prepare a supramolecular hybrid composed of AuNPs/copolymer 1-wrapped SWNTs, which were studied by atomic force and scanning and transmission electron microscopies. A fabricated TFT device using the semiconducting SWNTs/copolymer 1 shows evident p-type transport with an On/Off ratio of ~10(5). The transport properties of the TFT changed after coordination of the AuNPs with the SWNTs/copolymer 1.

Supramolecular hybrid of metal nanoparticles and semiconducting single-walled carbon nanotubes wrapped by a fluorene-carbazole copolymer.

The first approach for the preparation of metal nanoparticle/semiconducting single-walled carbon nanotube (SWNT) hybrids with specified chirality is described. For this purpose, a copolymer of a fluorene derivative with two long-chain alkyl substituents and a carbazole derivative carrying a thiol group was used. The copolymer was found to selectively dissolve (7,6)- and (8,7)SWNTs, as determined by UV/Vis/NIR absorption and Raman spectroscopy and 2D photoluminescence mapping. Gold and silver nanoparticles with diameters of about 3.8 and about 3.2 nm, respectively, were readily attached along the SWNTs by means of coordination bonds between the nanoparticles and the thiol moieties on the copolymer, as revealed by atomic force and electron microscopy studies. The study provides a novel way to design and fabricate metal nanoparticle/semiconducting SWNT hybrids with specific nanotube chirality.

Positive outcome of first-line therapy for a SMARCA4-deficient thoracic sarcomatoid tumor.

SMARCA4-deficient thoracic sarcomatoid tumor is a rare malignancy indicating some characteristics of a smoking-related disease. The purpose of this report is to describe a case of aggressive thoracic tumor with loss of immunochemical SMARCA4 expression and detail the results of our treatment regimen. The patient was a 58-year-old male and clinicopathologically diagnosed with a SMARCA4-deficient thoracic sarcomatoid tumor. Pembrolizumab plus carboplatin and pemetrexed resulted in significant response. This combination therapy showed potential for first-line systemic treatment of SMARCA4-deficient thoracic sarcomatoid tumors.