Theoretical study of fructose adsorption and conversion to trioses on metal-organic frameworks.

The conversion of chemically modified biomass into more valuable chemicals has recently gained significant attention from industry. In this study, we investigate the adsorption of fructose and its conversion into two trioses, glyceraldehyde (GLA) and dihydroxyacetone (DHA), on metal-organic frameworks using density functional theory calculations. The reaction mechanism proceeds through two main steps: first, the opening of the fructose ring; second, the retro-aldol fragmentation, which is favored over intramolecular hydrogen shifts. The substitution of a tetravalent metal in the metal-organic framework leads to different adsorption strengths in the order Hf-NU-1000 > Zr-NU-1000 > Ti-NU-1000. The catalytic activities of Hf-NU-1000 and Zr-NU-1000 are found to be similar. Both are more active than Ti-NU1000, corresponding to their relative Lewis acidity. It was found that functionalization of the organic linkers of the Hf-NU-1000 MOF does not improve its catalytic activity. The catalytic activity follows the order Hf-MOF-808 > Hf-NU-1000 > Hf-UIO-66 when based on either the overall activation energy or the turnover frequency (TOF).

A Simple Electron-Density Based Force Field Model for High-Energy Interactions between Atoms and Molecules.

In high-energy molecular dynamics or Monte Carlo simulations, standard force fields optimized for simulations at ambient temperatures are inadequate. This is largely because their repulsive parts have been regarded as not very significant, even well below zero interaction energies. It is, therefore, not obvious which force fields to resort to for simulating hot gases or plasmas. A force field model that uses the electronic densities of noninteracting atoms or molecules within the pair approximation is introduced. We start by deriving a naïve model that neglects any exchange and correlation effects between the electronic clouds and then correct this model by adding a term calibrated from ab initio calculations using the CCSD(T)/cc-pVTZ level of theory. The resulting expression for this term can be regarded as a simple exchange-correlation function. We compare the results for the repulsive part of the potential energy hypersurfaces with the force fields commonly used on some dimers of small molecules.

A polarizable valence electron density based force field for high-energy interactions between atoms and molecules.

High-accuracy molecular force field models suited for hot gases and plasmas are not as abundant as those geared toward ambient pressure and temperature conditions. Here, we present an improved version of our previous electron-density based force field model that can now account for polarization effects by adjusting the atomic valence electron contributions to match ab initio calculated Mulliken partial charges. Using a slightly modified version of the Hohenberg-Kohn theorem, we also include an improved theoretical formulation of our model when applied to systems with degenerate ground states. We present two variants of our polarizable model, fitted from ab initio reference data calculated at CCSD(T)/cc-pVTZ and CCSD(T)/CEP-31G levels of theory, that both accurately model water dimer interaction energies. Further improvements include the additional interaction components with fictitious non-spherically symmetric, yet atom-centered, electron densities and fitting the exchange and correlation coefficients against analytical expressions. The latter removes all unphysical oscillations that are observed in the previous non-polarizable variant of our force field.

Multi-layer inverse design of vertical grating couplers for high-density, commercial foundry interconnects.

Density-based topology optimization is used to design large-scale, multi-layer grating couplers that comply with commercial foundry fabrication constraints while simultaneously providing beam profiles that efficiently couple to a single-mode optical fiber without additional optics. Specifically, we describe the design process and experimentally demonstrate both single- and dual-polarization grating couplers that couple at normal incidence (0° from the normal) with low backreflections (-13.7 dB and -15.4 dB at the center wavelength), broad 3 dB bandwidths (75 nm and 89 nm), and standard coupling efficiencies (-4.7 dB and -7.0 dB). The dual-polarization grating couplers exhibit over 30 dB of polarization extinction across the entire band. The devices were fabricated on the GlobalFoundries 45CLO CMOS platform and characterized across three separate wafers. This new design approach produces distinct features for multiple foundry layers and yields emitters with arbitrary, user-specified far-field profiles.

Understanding the interactions between lithium polysulfides and anchoring materials in advanced lithium-sulfur batteries using density functional theory.

Lithium-sulfur batteries (LSBs) are promising energy storage devices because of their high theoretical capacity and energy density. However, the "shuttle" effect in lithium polysulfides (LiPSs) is an unresolved issue that can hinder their practical commercial application. Research on LSBs has focused on finding appropriate materials that suppress this effect by efficiently anchoring the LiPSs intermediates. Quantum chemical computations are a useful tool for understanding the mechanistic details of chemical interaction involving LiPSs, and they can also offer strategies for the rational design of LiPSs anchoring materials. In this perspective, we highlight computational and theoretical work performed on this topic. This includes elucidating and characterizing the adsorption mechanisms, and the dominant types of interactions, and summarizing the binding energies of LiPSs on anchoring materials. We also give examples and discuss the potential of descriptors and machine learning approaches to predict the adsorption strength and reactivity of materials. We believe that both approaches will become indispensable in modelling future LSBs.

Sensing the ortho Positions in C6Cl6 and C6H4Cl2 from Cl2- Formation upon Molecular Reduction.

The geometrical effect of chlorine atom positions in polyatomic molecules after capturing a low-energy electron is shown to be a prevalent mechanism yielding Cl2-. In this work, we investigated hexachlorobenzene reduction in electron transfer experiments to determine the role of chlorine atom positions around the aromatic ring, and compared our results with those using ortho-, meta- and para-dichlorobenzene molecules. This was achieved by combining gas-phase experiments to determine the reaction threshold by means of mass spectrometry together with quantum chemical calculations. We also observed that Cl2- formation can only occur in 1,2-C6H4Cl2, where the two closest C-Cl bonds are cleaved while the chlorine atoms are brought together within the ring framework due to excess energy dissipation. These results show that a strong coupling between electronic and C-Cl bending motion is responsible for a positional isomeric effect, where molecular recognition is a determining factor in chlorine anion formation.

Dehydrogenation of ethanol to acetaldehyde with nitrous oxide over the metal-organic framework NU-1000: a density functional theory study.

The conversion of ethanol to more valuable hydrocarbon compounds receives great attention in chemical industries because it could diminish the dependency on petroleum as raw material. We investigate the catalytic performance of Fe-supported MOF NU-1000 for the dehydrogenation of ethanol to acetaldehyde with nitrous oxide (N2O) by deriving the relevant reaction profiles with density functional theory calculations. In the proposed mechanism, the activation barrier of the rate-determining step is almost four times lower in the presence of N2O than without it. The supported NU-1000 framework plays also important role since it facilitates electron transfers and stabilizes all species along the reaction coordinate. When considering the catalytic activity of tetravalent metal centers (Zr, Hf and Ti) substituted into NU-1000 it is found that their activity decreases in the order Hf ≥ Zr > Ti, based on activation energies and turnover frequencies (TOF). Concerning MOF linkers, we show that the catalytic activity is not further improved by functionalizing NU-1000 with either electron-donating or electron-withdrawing organic groups.

Phenol Tautomerization Catalyzed by Acid-Base Pairs in Lewis Acidic Beta Zeolites: A Computational Study.

We investigate the tautomerization of phenol catalyzed by acid-base active pair sites in Lewis acidic Beta zeolites by means of density functional calculations using the M06-L functional. An analysis of the catalytic mechanism shows that hafnium on the Beta zeolite causes the strongest absorption of phenol compared to zirconium, tin, and germanium. This can be rationalized by the highest delocalization of electron density between the Lewis site and the oxygen of phenol which can in turn be quantified by the perturbative E(2) stabilization energy. The reaction is assumed to proceed in two steps, the phenol O-H bond dissociation and the protonation of the intermediate to form the cyclohexa-2,4-dien-1-one product. The rate determining step is the first one with a free activation energy of 26.3, 25.0, 22.1 and 22.7 kcal mol-1 for Ge-Beta, Sn-Beta, Zr-Beta, and Hf-Beta zeolites, respectively. The turnover frequencies follow these reaction barriers. Hence, the intrinsic catalytic activity of the Lewis acidic Beta zeolites studied here is in the order of Hf-Beta≈Zr-Beta>Sn-Beta> Ge-Beta for the tautomerization of phenol.

Computational study of the carbonyl-ene reaction between formaldehyde and propylene encapsulated in coordinatively unsaturated metal-organic frameworks M3(btc)2 (M = Fe, Co, Ni, Cu and Zn).

The carbonyl-ene reaction between encapsulated formaldehyde and propylene over the coordinatively unsaturated metal-organic frameworks M3(btc)2 (M = Fe, Co, Ni, Cu and Zn) has been investigated by means of density functional calculations. Zn3(btc)2 adsorbs formaldehyde strongest due to electron delocalization between Zn and the oxygen atom of the reactant molecule. The reaction is proposed to proceed in a single step involving proton transfer and carbon-carbon bond formation. We find the relative catalytic activity to be Zn3(btc)2 > Fe3(btc)2 ≥ Co3(btc)2 > Ni3(btc)2 > Cu3(btc)2, based on activation energy and turnover frequencies (TOF). The low activation energy for Zn3(btc)2 compared to the others can be explained by the delocalization of electron density between the carbonyl bond and the catalyst active sites, leading to a more stable transition state. The five MOFs are used to propose a descriptor for the relationship between activation energy on one side and electronic properties or adsorption energies on the other side in order to allow a quick screening of other catalytic materials for this reaction.

Total and partial electron impact ionization cross sections of fusion-relevant diatomic molecules.

We report calculations of total (and absolute) electron-impact ionization cross sections (EICSs) for the fusion-relevant diatomic molecular species BeH, BeN, BeO, WH, WBe, WN, WO, O2, and N2 by means of the Deutsch-Märk and the binary-encounter-Bethe methods in the energy range from threshold to 10 keV. In addition, we discuss an empirical scheme to estimate partial cross sections from the total ones based on reaction energetics and empirical threshold laws and explore its accuracy by assessing available experimental data on total and partial EICSs. Finally, we also report parameters obtained by fitting the calculated cross sections to an expression commonly used in fusion edge plasma modeling.

Furfural to Furfuryl Alcohol: Computational Study of the Hydrogen Transfer on Lewis Acidic BEA Zeolites and Effects of Cation Exchange and Tetravalent Metal Substitution.

The hydrogen transfer of furfural to furfuryl alcohol with i-propanol as the hydrogen source over cation-exchanged Lewis acidic BEA zeolite has been investigated by means of density functional calculations. The reaction proceeds in three steps. First the O-H bond of i-propanol is broken to form a propoxide intermediate. After that, the furylmethoxy intermediate is formed via hydrogen transfer process, and finally furylmethoxy abstracts the proton to form the furfuryl alcohol product. The second step is rate-determining by requiring the highest activation energy (23.8 kcal/mol) if the reaction takes place on Li-Sn-BEA zeolite. We find that the catalytic activity of various cation-exchanged Sn-BEA zeolites is in the order Li-Sn-BEA > Na-Sn-BEA > K-Sn-BEA. The lower activation energy for Li-Sn-BEA compared to Na-Sn-BEA and K-Sn-BEA can be explained by the larger charge transfer from the carbonyl bond to the catalyst, leading to its activation and to the attraction of the hydrogen being transferred. The larger charge transfer in turn is due to the smaller gap between the energies of furfural HOMO and the zeolite LUMO in Li-Sn-BEA, compared to both Na-Sn-BEA and K-Sn-BEA. In a similar way, we also compare the catalytic activity of tetravalent metal centers (Sn, Zr, and Hf) substituted into BEA and find in the order Zr ≥ Hf > Sn, based on activation energies. Finally we investigate statistically which property of the reactants is a suitable descriptor for an approximative prediction of the reaction rate in order to be able to quickly screen promising catalytic materials for this reaction.

A computational study of the catalytic aerobic epoxidation of propylene over the coordinatively unsaturated metal-organic framework Fe3(btc)2: formation of propylene oxide and competing reactions.

The aerobic epoxidation of propylene over the metal-organic framework Fe3(btc)2 (btc = 1,3,5-benzentricarboxylate) as catalyst has been investigated by means of density functional calculations. The mechanisms of the reaction towards propylene oxide, carbonylic products (acetone and propanal) and a pi-allyl radical were investigated to assess the efficiency of Fe3(btc)2 for the selective formation of propylene oxide. Propylene oxide and carbonylic products are formed on Fe3(btc)2 by proceeding via propyleneoxy intermediates in the first step. Subsequently, the intermediates can then either be transformed to propylene oxide by way of ring closure of the intermediate or to the carbonylic compounds of propanal and acetone via 1,2-hydride shift. The results show that the formation of propylene oxide is favored over the formation of carbonylic products mainly due to the activation barriers being 2-3 times smaller. The activation barriers for the formation of the propyleneoxy intermediates on the Fe3(btc)2 catalyst for the first and second reaction cycle are also lower than the barriers obtained for the formation of the pi-allyl radical that acts as the precursor to combustion products. On the basis of these computational results, we therefore expect a high catalytic selectivity of the Fe3(btc)2 catalyst with respect to the formation of propylene oxide. We also compared the catalytic activities of Fe3(btc)2 and Cu3(btc)2. The activation energy of the rate-determining step is almost 2 times lower for Fe3(btc)2 than that for Cu3(btc)2, due to a larger charge transfer from the catalytic site to the O2 molecule in the case of Fe3(btc)2.

Is acute pulmonary embolism more severe in the presence of obstructive sleep apnea? Results from an observational cohort study.

Obstructive sleep apnea (OSA) might influence disease severity in acute pulmonary embolism (PE). 253 survivors of acute PE were evaluated for sleep-disordered breathing by portable monitoring and nocturnal polysomnography. PE patients with an apnea-hypopnoea index (AHI) ≥ 15/h were significantly older (p < 0.001), had significantly impaired renal (p < 0.001) and left ventricular functions (p = 0.003), showed significantly elevated troponin I (p = 0.005) and D-dimer levels (p = 0.024), were hospitalised significantly longer (p < 0.001), and had significantly elevated PE severity scores (p = 0.015). Moderate or severe OSA was significantly (p = 0.006) more frequent among intermediate- and high-risk PE patients (81.0%) compared to the low-risk PE cohort (16.3%). Multiple logistic regression analysis revealed that PE patients in the AHI ≥ 15/h cohort were at significant risk for myocardial injury (p = 0.015). Based on clinical risk stratification models, patients with no relevant OSA syndrome tended to be at a lower risk for short-term mortality (p = 0.068). Acute PE might present more severely in OSA patients, possibly due to nocturnal hypoxemia or OSA-related hypercoagulability.

Temperature dependence of dissociative electron attachment to bromo-chlorotoluene isomers: Competition between detachment of Cl- and Br.

Dissociative electron attachment to three isomers of bromo-chlorotoluene was investigated in the electron energy range from 0 to 2 eV for gas temperatures in the range of 392-520 K using a crossed electron-molecular beam apparatus with a temperature regulated effusive molecular beam source. For all three molecules, both Cl- and Br- are formed. The ion yields of both halogenides show a pronounced temperature effect. In the case of Cl- and Br-, the influence of the gas temperature can be observed at the threshold peak close to 0 eV. The population of molecules that have some of their out-of-plane modes excited varies strongly in the temperature range investigated, indicating that such vibrations might play a role in the energy transfer towards bond breaking. Potential energy curves for the abstraction of Cl- and Br- were calculated and extrapolated into the metastable domain. The barriers in the diabatic curves approximated in this way agree well with the ones derived from the temperature dependence observed in the experiments.

Isomer Selectivity in Low-Energy Electron Attachment to Nitroimidazoles.

Low-energy electrons effectively decompose the isomers 2-nitroimidazole and 4(5)-nitroimidazole by dissociative electron attachment (DEA) into a variety of fragment anions and radicals. The present study shows that a distinct selectivity for the two isomers occurs in the DEA reactions. Several new decay channels are observed for 2-nitroimidazole, including a dominant one leading to the loss of molecular H2 O by attachment of a low-energy electron. In contrast, the loss of a single hydrogen atom is a much more efficient reaction in DEA to 4(5)-nitroimidazole. Quantum chemical calculations were carried out to explain the pronounced isomer effect found in the DEA experiment. Although the free energies of the reactions are similar for the different isomers, the very different natures of the dipole-bound states and valence-bound anions lead to preference for or hindrance of a particular dissociation channel. Nitroimidazolic compounds are considered as radiosensitizing compounds in tumor radiation therapy. The enhanced formation of fragments, including the highly reactive hydroxyl radical, in DEA to 2-nitroimidazole suggests that it may be a more efficient radiosensitizing agent than 4(5)-nitroimidazoles.

Coordinatively Unsaturated Metal-Organic Frameworks M3(btc)2 (M = Cr, Fe, Co, Ni, Cu, and Zn) Catalyzing the Oxidation of CO by N2O: Insight from DFT Calculations.

The oxidation of CO by N2O over metal-organic framework (MOF) M3(btc)2 (M = Fe, Cr, Co, Ni, Cu, and Zn) catalysts that contain coordinatively unsaturated sites has been investigated by means of density functional theory calculations. The reaction proceeds in two steps. First, the N-O bond of N2O is broken to form a metal oxo intermediate. Second, a CO molecule reacts with the oxygen atom of the metal oxo site, forming one C-O bond of CO2. The first step is a rate-determining step for both Cu3(btc)2 and Fe3(btc)2, where it requires the highest activation energy (67.3 and 19.6 kcal/mol, respectively). The lower value for the iron compound compared to the copper one can be explained by the larger amount of electron density transferred from the catalytic site to the antibonding of N2O molecules. This, in turn, is due to the smaller gap between the highest occupied molecular orbital (HOMO) of the MOF and the lowest unoccupied molecular orbital (LUMO)  of N2O for Fe3(btc)2 compared to Cu3(btc)2. The results indicate the important role of charge transfer for the N-O bond breaking in N2O. We computationally screened other MOF M3(btc)2 (M = Cr, Fe, Co, Ni, Cu, and Zn) compounds in this respect and show some relationships between the activation energy and orbital properties like HOMO energies and the spin densities of the metals at the active sites of the MOFs.

Ethane C-H bond activation on the Fe(iv)-oxo species in a Zn-based cluster of metal-organic frameworks: a density functional theory study.

We first investigate the feasibility of designing a Fe-oxo complex for the activation of alkane C-H bonds by (a) incorporating an Fe ion into a Zn-based cluster derived from a metal-organic framework (MOF) and (b) creating the Fe-oxo complex via decomposition of N2O over a Fe2+-substituted Zn-based cluster (Fe-Zn3O(pyrazole)6). From the energy profile, it turns out that both steps should be feasible and that the resulting Fe-oxo complex is stable. In the main step, we then investigate the reactivity of this Fe-oxo cluster for the C-H bond cleavage of ethane by calculating the reaction energy profile and analyzing the electronic structure along the relevant steps. Two mechanisms, namely the σ and π pathways on the triplet and quintet potential energy surfaces, were unraveled for this study of catalytic activity. It is shown that the σ pathway on the quintet surface is kinetically and thermodynamically favorable with an energy barrier of 22.5 kcal mol-1. The π pathway on the quintet and triplet surfaces has activation energies of 26.9 kcal mol-1 and 24.9 kcal mol-1, respectively. An alternative unusual pathway called the δ mechanism on the triplet surface is also observed with an energy barrier of 12.6 kcal mol-1. It is, however, thermodynamically at a disadvantage compared to the σ pathway on the quintet surface. Favorable d-d interaction on the Fe center and less steric hindrance from the equatorial ligands at the transition state are the key factors that cause the σ pathway on the quintet surface to have the lowest activation energy. All our calculations are of the cluster type and have been performed at the B3LYP-D3/def2-TZVP level of theory.

Ethylene Epoxidation with Nitrous Oxide over Fe-BTC Metal-Organic Frameworks: A DFT Study.

The epoxidation of ethylene with N2 O over the metal-organic framework Fe-BTC (BTC=1,3,5-benzentricarboxylate) is investigated by means of density functional calculations. Two reaction paths for the production of ethylene oxide or acetaldehyde are systematically considered in order to assess the efficiency of Fe-BTC for the selective formation of ethylene oxide. The reaction starts with the decomposition of N2 O to form an active surface oxygen atom on the Fe site of Fe-BTC, which subsequently reacts with an ethylene molecule to form an ethyleneoxy intermediate. This intermediate can then be selectively transformed either by 1,2-hydride shift into the undesired product acetaldehyde or into the desired product ethylene oxide by way of ring closure of the intermediate. The production of ethylene oxide requires an activation energy of 5.1 kcal mol-1 , which is only about one-third of the activation energy of acetaldehyde formation (14.3 kcal mol-1 ). The predicted reaction rate constants for the formation of ethylene oxide in the relevant temperature range are approximately 2-4 orders of magnitude higher than those for acetaldehyde. Altogether, the results suggest that Fe-BTC is a good candidate catalyst for the epoxidation of ethylene by molecular N2 O.

Experimental evidence for the influence of charge on the adsorption capacity of carbon dioxide on charged fullerenes.

We show, both experimentally and theoretically, that the adsorption of CO2 is sensitive to charge on a capturing model carbonaceous surface. In the experiment we doped superfluid helium droplets with C60 and CO2 and exposed them to ionising free electrons. Both positively and negatively charged C60(CO2)n(+/-) cluster ion distributions are observed using a high-resolution mass spectrometer and they show remarkable and reproducible anomalies in intensities that are strongly dependent on the charge. The highest adsorption capacity is seen with C60(+). Complementary density functional theory calculations and molecular dynamics simulations provided insight into the nature of the interaction of charged C60 with CO2 as well as trends in the packing of C60(+) and C60(-). The quadrupole moment of CO2 itself was found to be decisive in determining the charge dependence of the observed adsorption features. Our findings are expected to be applied for the adsorption of CO2 on charged surfaces in general.

A DFT Study of Tungsten-Methylidene Formation on a W/ZSM-5 Zeolite: The Metathesis Active Site.

Tungsten-methylidene formation from ethene on either the W(IV) , W(V) , or W(VI) active sites of a W/ZSM-5 zeolite is investigated by using the M06-L functional. The reaction is assumed to proceed in two steps; the first step is the [2+2] cycloaddition between ethene and the W-O active site to form an oxametallacycle intermediate. The intermediate is then decomposed to produce the W-methylidene active site from the metathesis reaction. The overall activation barrier of the reaction on W(VI) (27.3 kcal mol(-1) ) is considerably lower than the ones for W(IV) and W(V) (69.4 and 37.1 kcal mol(-1) , respectively). Moreover, the reaction involving the W(VI) site also stabilizes intermediates and products to a larger extent than the ones on the W(IV) and W(V) sites. As a result, we have demonstrated that the reaction of the W-methylidene metathesis active site is both kinetically and thermodynamically favored to occur on the W(VI) active site of the zeolite.