Detalhe da pesquisa
1.
ModPhred: an integrative toolkit for the analysis and storage of nanopore sequencing DNA and RNA modification data.
Bioinformatics
; 38(1): 257-260, 2021 12 22.
Artigo
em Inglês
| MEDLINE | ID: mdl-34293115
2.
MetaPhOrs 2.0: integrative, phylogeny-based inference of orthology and paralogy across the tree of life.
Nucleic Acids Res
; 48(W1): W553-W557, 2020 07 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-32343307
3.
Transcriptome analyses of cells carrying the Type II Csp231I restriction-modification system reveal cross-talk between two unrelated transcription factors: C protein and the Rac prophage repressor.
Nucleic Acids Res
; 47(18): 9542-9556, 2019 10 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-31372643
4.
nextPARS: parallel probing of RNA structures in Illumina.
RNA
; 24(4): 609-619, 2018 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-29358234
5.
Standardized benchmarking in the quest for orthologs.
Nat Methods
; 13(5): 425-30, 2016 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-27043882
6.
Correction: The Genomic Aftermath of Hybridization in the Opportunistic Pathogen Candida metapsilosis.
PLoS Genet
; 12(7): e1006202, 2016 Jul.
Artigo
em Inglês
| MEDLINE | ID: mdl-27415787
7.
Redundans: an assembly pipeline for highly heterozygous genomes.
Nucleic Acids Res
; 44(12): e113, 2016 07 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-27131372
8.
The Genomic Aftermath of Hybridization in the Opportunistic Pathogen Candida metapsilosis.
PLoS Genet
; 11(10): e1005626, 2015 Oct.
Artigo
em Inglês
| MEDLINE | ID: mdl-26517373
9.
PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome.
Nucleic Acids Res
; 42(Database issue): D897-902, 2014 Jan.
Artigo
em Inglês
| MEDLINE | ID: mdl-24275491
10.
Interactions between closely related bacterial strains are revealed by deep transcriptome sequencing.
Appl Environ Microbiol
; 81(24): 8445-56, 2015 Dec.
Artigo
em Inglês
| MEDLINE | ID: mdl-26431969
11.
Metabolic gene clusters encoding the enzymes of two branches of the 3-oxoadipate pathway in the pathogenic yeast Candida albicans.
FEMS Yeast Res
; 15(3)2015 May.
Artigo
em Inglês
| MEDLINE | ID: mdl-25743787
12.
Quantitative analysis of tRNA abundance and modifications by nanopore RNA sequencing.
Nat Biotechnol
; 42(1): 72-86, 2024 Jan.
Artigo
em Inglês
| MEDLINE | ID: mdl-37024678
13.
MetaPhOrs: orthology and paralogy predictions from multiple phylogenetic evidence using a consistency-based confidence score.
Nucleic Acids Res
; 39(5): e32, 2011 Mar.
Artigo
em Inglês
| MEDLINE | ID: mdl-21149260
14.
PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions.
Nucleic Acids Res
; 39(Database issue): D556-60, 2011 Jan.
Artigo
em Inglês
| MEDLINE | ID: mdl-21075798
15.
Epigenetic Response of Yarrowia lipolytica to Stress: Tracking Methylation Level and Search for Methylation Patterns via Whole-Genome Sequencing.
Microorganisms
; 9(9)2021 Aug 24.
Artigo
em Inglês
| MEDLINE | ID: mdl-34576693
16.
Genome analysis of Candida subhashii reveals its hybrid nature and dual mitochondrial genome conformations.
DNA Res
; 28(3)2021 Jun 25.
Artigo
em Inglês
| MEDLINE | ID: mdl-34129020
17.
Quantitative profiling of pseudouridylation dynamics in native RNAs with nanopore sequencing.
Nat Biotechnol
; 39(10): 1278-1291, 2021 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-33986546
18.
MasterOfPores: A Workflow for the Analysis of Oxford Nanopore Direct RNA Sequencing Datasets.
Front Genet
; 11: 211, 2020.
Artigo
em Inglês
| MEDLINE | ID: mdl-32256520
19.
Interplay of Chimeric Mating-Type Loci Impairs Fertility Rescue and Accounts for Intra-Strain Variability in Zygosaccharomyces rouxii Interspecies Hybrid ATCC42981.
Front Genet
; 10: 137, 2019.
Artigo
em Inglês
| MEDLINE | ID: mdl-30881382
20.
Genome Sequence of the Yeast Saprochaete ingens CBS 517.90.
Microbiol Resour Announc
; 8(50)2019 Dec 12.
Artigo
em Inglês
| MEDLINE | ID: mdl-31831616