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1.
Soft Matter ; 10(41): 8145-56, 2014 Nov 07.
Artigo em Inglês | MEDLINE | ID: mdl-25209428

RESUMO

Complex functional films containing enzymes and other biomolecules are easily fabricated in nm-scale thicknesses by using layer-by-layer (LbL) methodologies first popularized by Lvov and Decher. In this review, we highlight the high level functional capabilities possible with LbL films of biomolecules based on our own research experiences. We first describe the basics of enzyme film fabrication by LbL alternate electrostatic adsorption, then discuss how to make functional enzyme-polyion films of remarkably high stability. Focusing on cytochrome P450s, we discuss films developed to electrochemically activate the natural catalytic cycle of these key metabolic enzymes. We then describe multifunctional, multicomponent DNA/enzyme/polyion films on arrays and particle surfaces for high throughput metabolic toxicity screening using electrochemiluminescence and LC-MS/MS. Using multicomponent LbL films, complex functionality for bioanalytical and biochemical purposes can be achieved that is difficult or impossible using conventional approaches.


Assuntos
Reatores Biológicos , Sistema Enzimático do Citocromo P-450/química , Enzimas Imobilizadas/química , Adsorção , DNA/química
2.
Chem Res Toxicol ; 26(8): 1229-39, 2013 Aug 19.
Artigo em Inglês | MEDLINE | ID: mdl-23879290

RESUMO

There is limited and sometimes contradictory information about the genotoxicity of the polycyclic aromatic hydrocarbon benzo[ghi]perylene (B[ghi]P). Using recently developed metabolic toxicity screening arrays and a biocolloid reactor-LC-MS/MS approach, both featuring films of DNA and human metabolic enzymes, we demonstrated the relatively low reactivity of metabolically activated B[ghi]P toward DNA. Electro-optical toxicity screening arrays showed that B[ghi]P metabolites damage DNA at a 3-fold lower rate than benzo[a]pyrene (B[a]P), whose metabolites have a strong and well-understood propensity for DNA damage. Metabolic studies using magnetic bead biocolloid reactors coated with microsomal enzymes in 96-well plates showed that cyt P450s 1A1 and 1B1 provide high activity for B[ghi]P and B[a]P conversion. Consistent with published results, the major metabolism of B[ghi]P involved oxidations at 3,4 and 11,12 positions, leading to the formation of B[ghi]P 3,4-oxide and B[ghi]P 3,4,11,12-bisoxide. B[ghi]P 3,4-oxide was synthesized and reacted with deoxyadenosine at N6 and N7 positions and with deoxyguanosine at the N2 position. B[ghi]P 3,4-oxide is hydrolytically unstable and transforms into the 3,4-diol or converts to 3- or 4-hydroxy B[ghi]P. LC-MS/MS of reaction products from the magnetic biocolloid reactor particles coated with DNA and human enzymes revealed for the first time that a major DNA adduct results from the reaction between B[ghi]P 3,4,11,12-bisoxide and deoxyguanosine. Results also demonstrated 5-fold lower formation rates of the major DNA adduct for B[ghi]P metabolites compared to B[a]P. Overall, results from both the electro-optical array and biocolloid reactor-LC-MS/MS consistently suggest a lower human genotoxicity profile of B[ghi]P than B[a]P.


Assuntos
Benzo(a)pireno/química , Cromatografia Líquida de Alta Pressão , DNA/análise , Espectrometria de Massas em Tandem , Hidrocarboneto de Aril Hidroxilases/metabolismo , Benzo(a)pireno/metabolismo , Benzo(a)pireno/toxicidade , Cromatografia Líquida de Alta Pressão/instrumentação , Citocromo P-450 CYP1A1/metabolismo , Citocromo P-450 CYP1B1 , DNA/metabolismo , Adutos de DNA/análise , Dano ao DNA/efeitos dos fármacos , Humanos , Magnetismo , Análise em Microsséries , Polietilenos/química , Compostos de Amônio Quaternário/química , Espectrometria de Massas em Tandem/instrumentação
3.
Analyst ; 138(1): 171-8, 2013 Jan 07.
Artigo em Inglês | MEDLINE | ID: mdl-23095952

RESUMO

A multiplexed, microfluidic platform to detect reactive metabolites is described, and its performance is illustrated for compounds metabolized by oxidative and bioconjugation enzymes in multi-enzyme pathways to mimic natural human drug metabolism. The device features four 8-electrode screen printed carbon arrays coated with thin films of DNA, a ruthenium-polyvinylpyridine (RuPVP) catalyst, and multiple enzyme sources including human liver microsomes (HLM), cytochrome P450 (cyt P450) 1B1 supersomes, microsomal epoxide hydrolase (EH), human S9 liver fractions (Hs9) and N-acetyltransferase (NAT). Arrays are arranged in parallel to facilitate multiple compound screening, enabling up to 32 enzyme reactions and measurements in 20-30 min. In the first step of the assay, metabolic reactions are achieved under constant flow of oxygenated reactant solutions by electrode driven natural catalytic cycles of cyt P450s and cofactor-supported bioconjugation enzymes. Reactive metabolites formed in the enzyme reactions can react with DNA. Relative DNA damage is measured in the second assay step using square wave voltammetry (SWV) with RuPVP as catalyst. Studies were done on chemicals known to require metabolic activation to induce genotoxicity, and results reproduced known features of metabolite DNA-reactivity for the test compounds. Metabolism of benzo[a]pyrene (B[a]P) by cyt P450s and epoxide hydrolase showed an enhanced relative DNA damage rate for DNA compared to cyt P450s alone. DNA damage rates for arylamines by pathways featuring both oxidative and conjugative enzymes at pH 7.4 gave better correlation with rodent genotoxicity metric TD(50). Results illustrate the broad utility of the reactive metabolite screening device.


Assuntos
Enzimas/metabolismo , Técnicas Analíticas Microfluídicas/métodos , Aminas/química , Aminas/metabolismo , Eletroquímica , Humanos , Compostos Organometálicos/química , Oxirredução , Preparações Farmacêuticas/metabolismo , Reprodutibilidade dos Testes
4.
J Am Chem Soc ; 133(5): 1459-65, 2011 Feb 09.
Artigo em Inglês | MEDLINE | ID: mdl-21214177

RESUMO

Cytochrome (cyt) P450s comprise the enzyme superfamily responsible for human oxidative metabolism of a majority of drugs and xenobiotics. Electronic delivery of electrons to cyt P450s could be used to drive the natural catalytic cycle for fundamental investigations, stereo- and regioselective synthesis, and biosensors. We describe herein 30 nm nanometer-thick films on electrodes featuring excess human cyt P450s and cyt P450 reductase (CPR) microsomes that efficiently mimic the natural catalytic pathway for the first time. Redox potentials, electron-transfer rates, CO-binding, and substrate conversion rates confirmed that electrons are delivered from the electrode to CPR, which transfers them to cyt P450. The film system enabled electrochemical probing of the interaction between cyt P450 and CPR for the first time. Agreement of film voltammetry data with theoretical simulations supports a pathway featuring a key equilibrium redox reaction in the natural catalytic pathway between reduced CPR and cyt P450 occurring within a CPR-cyt P450 complex uniquely poised for substrate conversion.


Assuntos
Biocatálise , Sistema Enzimático do Citocromo P-450/metabolismo , Elétrons , Monóxido de Carbono/metabolismo , Sistema Enzimático do Citocromo P-450/química , Eletroquímica , Eletrodos , Transporte de Elétrons , Humanos , Cinética , Microssomos/enzimologia , NADP/metabolismo , NADPH-Ferri-Hemoproteína Redutase/química , NADPH-Ferri-Hemoproteína Redutase/metabolismo
5.
Anal Chem ; 83(7): 2754-60, 2011 Apr 01.
Artigo em Inglês | MEDLINE | ID: mdl-21395325

RESUMO

Arrays for screening metabolite-generated toxicity utilizing spots containing DNA, enzyme, and electroluminescent (ECL) polymer ([Ru(bpy)(2)PVP(10)](2+)) were extended to include a fully representative set of metabolic enzymes from human and rat liver microsomes, human and rat liver cytosol, and mouse liver S9 fractions. Array use involves two steps: (1) enzyme activation of the test chemical and metabolite reaction with DNA, and then, (2) capture of ECL resulting from DNA damage using a charge coupled device (CCD) camera. Plots of ECL increase vs enzyme reaction time monitor relative rates of DNA damage and were converted into turnover rates for enzymic production of DNA-reactive metabolites. ECL turnover rates were defined by R, the initial slope of ECL increase versus enzyme reaction time normalized for amounts of enzyme and test chemical. R-values were used to establish correlations for 11 toxic compounds with the standard toxicity metrics rodent liver TD(50) and lethal dose (LD(50)), Ames tests, and Comet assays for in vitro DNA damage. Results support the value of the ECL genotoxicity arrays together with toxicity bioassays for early screening of new chemicals and drug candidates.


Assuntos
Eletroquímica/instrumentação , Medições Luminescentes , Testes de Toxicidade/instrumentação , Animais , Citosol/enzimologia , DNA/metabolismo , Ativação Enzimática , Humanos , Camundongos , Microssomos/enzimologia , Ratos
6.
Anal Chem ; 82(24): 10172-8, 2010 Dec 15.
Artigo em Inglês | MEDLINE | ID: mdl-21090635

RESUMO

An inexpensive, high-throughput genotoxicity screening method was developed by using magnetic particles coated with cytosol/microsome/DNA films as biocolloid reactors in a 96-well plate format coupled with liquid chromatography-mass spectrometry. Incorporation of both microsomal and cytosolic enzymes in the films provides a broad spectrum of metabolic enzymes representing a range of metabolic pathways for bioactivation of chemicals. Reactive metabolites generated via this process are trapped by covalently binding to DNA in the film. The DNA is then hydrolyzed and nucleobase adducts are collected using filters in the bottom for the 96-well plate of analysis by capillary liquid chromatography-tandem mass spectrometry (LC-MS/MS). The magnetic particles facilitate simple and rapid sample preparation and workup. Major DNA adducts from ethylene dibromide, N-acetyl-2-aminofluorene and styrene were identified in proof-of-concept studies. Relative formation rates of DNA adducts correlated well with rodent genotoxicity metric TD(50) for the three compounds. This method has the potential for high-throughput genotoxicity screening, providing chemical structure information that is complementary to toxicity bioassays.


Assuntos
Coloides/química , DNA , Enzimas , Ensaios de Triagem em Larga Escala/métodos , Redes e Vias Metabólicas , Testes de Toxicidade/métodos , Cromatografia Líquida , Adutos de DNA , Magnetismo , Espectrometria de Massas em Tandem
7.
J Am Chem Soc ; 131(44): 16215-24, 2009 Nov 11.
Artigo em Inglês | MEDLINE | ID: mdl-19886700

RESUMO

Voltammetry of cytochrome P450 (cyt P450) enzymes in ultrathin films with polyions was related for the first time to electronic and secondary structure. Heterogeneous electron transfer (hET) rate constants for reduction of the cyt P450s depended on heme iron spin state, with low spin cyt P450cam giving a value 40-fold larger than high spin human cyt P450 1A2, with mixed spin human P450 cyt 2E1 at an intermediate value. Asymmetric reduction-oxidation peak separations with increasing scan rates were explained by simulations featuring faster oxidation than reduction. Results are consistent with a square scheme in which oxidized and reduced forms of cyt P450s each participate in rapid conformational equilibria. Rate constants for oxidation of ferric cyt P450s in films by t-butyl hydroperoxide to active ferryloxy cyt P450s from rotating disk voltammetry suggested a weaker dependence on spin state, but in the reverse order of the observed hET reduction rates. Oxidation and reduction rates of cyt P450s in the films are also likely to depend on protein secondary structure around the heme iron.


Assuntos
Sistema Enzimático do Citocromo P-450/química , Técnicas Eletroquímicas , Heme/química , Ferro/química , Transporte de Elétrons , Humanos , Cinética , Estrutura Molecular , Estrutura Secundária de Proteína
8.
Anal Chem ; 81(24): 9921-9, 2009 Dec 15.
Artigo em Inglês | MEDLINE | ID: mdl-19904994

RESUMO

Silica nanoparticle bioreactors featuring thin films of enzymes and polyions were utilized in a novel high-throughput 96-well plate format for drug metabolism profiling. The utility of the approach was illustrated by investigating the metabolism of the drugs diclofenac (DCF), troglitazone (TGZ), and raloxifene, for which we observed known metabolic oxidation and bioconjugation pathways and turnover rates. A broad range of enzymes was included by utilizing human liver (HLM), rat liver (RLM) and bicistronic human-cyt P450 3A4 (bicis.-3A4) microsomes as enzyme sources. This parallel approach significantly shortens sample preparation steps compared to an earlier manual processing with nanoparticle bioreactors, allowing a range of significant enzyme reactions to be processed simultaneously. Enzyme turnover rates using the microsomal bioreactors were 2-3 fold larger compared to using conventional microsomal dispersions, most likely because of better accessibility of the enzymes. Ketoconazole (KET) and quinidine (QIN), substrates specific to cyt P450 3A enzymes, were used to demonstrate applicability to establish potentially toxic drug-drug interactions involving enzyme inhibition and acceleration.


Assuntos
Cromanos/química , Citocromo P-450 CYP3A/metabolismo , Diclofenaco/química , Microssomos Hepáticos/enzimologia , Cloridrato de Raloxifeno/química , Tiazolidinedionas/química , Animais , Reatores Biológicos , Cromanos/análise , Cromanos/metabolismo , Cromatografia Líquida , Citocromo P-450 CYP3A/química , Inibidores do Citocromo P-450 CYP3A , Diclofenaco/análise , Diclofenaco/metabolismo , Humanos , Cetoconazol/farmacologia , Espectrometria de Massas , Nanopartículas/química , Quinidina/farmacologia , Cloridrato de Raloxifeno/análise , Cloridrato de Raloxifeno/metabolismo , Ratos , Dióxido de Silício/química , Tiazolidinedionas/análise , Tiazolidinedionas/metabolismo , Troglitazona
9.
Anal Chem ; 81(2): 716-24, 2009 Jan 15.
Artigo em Inglês | MEDLINE | ID: mdl-19099359

RESUMO

Studies of metabolic enzyme inhibition are necessary in drug development and toxicity investigations as potential tools to limit or prevent appearance of deleterious metabolites formed, for example, by cytochrome (cyt) P450 enzymes. In this paper, we evaluate the use of enzyme/DNA toxicity biosensors as tools to investigate enzyme inhibition. We have examined DNA damage due to cyt P450cam metabolism of styrene using DNA/enzyme films on pyrolytic graphite (PG) electrodes monitored via Ru(bpy)(3)(2+)-mediated DNA oxidation. Styrene metabolism initiated by hydrogen peroxide was evaluated with and without the inhibitors, imidazole, imidazole-4-acetic acid, and sulconazole (in micromolar range) to monitor DNA damage inhibition. The initial rates of DNA damage decreased with increased inhibitor concentrations. Linear and nonlinear fits of Michaelis-Menten inhibition models were used to determine apparent inhibition constants (K(I)*) for the inhibitors. Elucidation of the best fitting inhibition model was achieved by comparing correlation coefficients and the sum of the square of the errors (SSE) from each inhibition model. Results confirmed the utility of the enzyme/DNA biosensor for metabolic inhibition studies. A simple competitive inhibition model best approximated the data for imidazole, imidazole-4-acetic acid and sulconazole with K(I)* of 268.2, 142.3, and 204.2 microM, respectively.


Assuntos
Técnicas Biossensoriais , Cânfora 5-Mono-Oxigenase/metabolismo , DNA/química , Inibidores Enzimáticos/química , 2,2'-Dipiridil/análogos & derivados , 2,2'-Dipiridil/síntese química , 2,2'-Dipiridil/química , Cânfora 5-Mono-Oxigenase/antagonistas & inibidores , Cânfora 5-Mono-Oxigenase/química , Dano ao DNA/efeitos dos fármacos , Eletroquímica , Eletrodos , Imidazóis/química , Imidazóis/farmacologia , Cinética , Nanotecnologia , Compostos Organometálicos/síntese química , Compostos Organometálicos/química , Potenciometria , Estireno/química , Estireno/toxicidade
10.
Chem Res Toxicol ; 22(2): 341-7, 2009 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-19166339

RESUMO

Tamoxifen, a therapeutic and chemopreventive breast cancer drug, was chosen as a model compound because of acknowledged species specific toxicity differences. Emerging approaches utilizing electro-optical arrays and nanoreactors based on DNA/microsome films were used to compare metabolite-mediated toxicity differences of tamoxifen in rodents versus humans. Hits triggered by liver enzyme metabolism were first provided by arrays utilizing a DNA damage end point. The arrays feature thin-film spots containing an electrochemiluminescent (ECL) ruthenium polymer ([Ru(bpy)(2)PVP(10)](2+); PVP, polyvinylpyridine), DNA, and liver microsomes. When DNA damage resulted from reactions with tamoxifen metabolites, it was detected by an increase in light from the oxidation of the damaged DNA by the ECL metallopolymer. The slope of ECL generation versus enzyme reaction time correlated with the rate of DNA damage. An approximate 2-fold greater ECL turnover rate was observed for spots with rat liver microsomes compared to that with human liver microsomes. These results were supported by liquid chromatography-tandem mass spectrometry (LC-MS/MS) analysis of reaction products using nanoreactors featuring analogous films on silica nanoparticles, allowing the direct measurement of the relative formation rate for alpha-(N(2)-deoxyguanosinyl)tamoxifen. We observed 2-5-fold more rapid formation rates for three major metabolites, i.e., alpha-hydroxytamoxifen, 4-hydroxytamoxifen, and tamoxifen N-oxide, catalyzed by rat liver microsomes compared to human liver microsomes. Comparable formation rates were observed for N-desmethyl tamoxifen with rat and human liver microsomes. A better detoxifying capacity for human liver microsomes than rat liver microsomes was confirmed utilizing glucuronyltransferase in microsomes together with UDP-glucuronic acid. Taken together, lower genotoxicity and higher detoxication rates presented by human liver microsomes correlate with the lower risk of tamoxifen in causing liver carcinoma in humans, provided the glucuronidation pathway is active.


Assuntos
Antineoplásicos/toxicidade , Dano ao DNA , Medições Luminescentes/métodos , Microssomos Hepáticos/metabolismo , Tamoxifeno/toxicidade , Testes de Toxicidade/métodos , Animais , Antineoplásicos/metabolismo , DNA/química , Adutos de DNA/análise , Adutos de DNA/química , Técnicas Eletroquímicas , Glucuronosiltransferase/metabolismo , Humanos , Microssomos Hepáticos/química , Microssomos Hepáticos/enzimologia , Nanotecnologia , Óptica e Fotônica , Ratos , Especificidade da Espécie , Tamoxifeno/metabolismo
11.
Anal Chem ; 80(14): 5279-85, 2008 Jul 15.
Artigo em Inglês | MEDLINE | ID: mdl-18563913

RESUMO

Platforms based on thin enzyme/DNA films were used in two-tier screening of chemicals for reactive metabolites capable of producing toxicity. Microsomes were used for the first time as sources of cytochrome (cyt) P450 enzymes in these devices. Initial rapid screening involved electrochemiluminescent (ECL) arrays featuring spots containing ruthenium poly(vinylpyridine), DNA, and rat liver microsomes or bicistronically expressed human cyt P450 2E1 (h2E1). Cyt P450 enzymes were activated via the NADPH/reductase cycle. When bioactivation of substrates in the films gives reactive metabolites, they are trapped by covalent attachment to DNA bases. The rate of increase in ECL with enzyme reaction time reflects relative DNA damage rates. "Toxic hits" uncovered by the array were studied in structural detail by using enzyme/DNA films on silica nanospheres as "nanoreactors" to provide nucleobase adducts from reactive metabolites. The utility of this synergistic approach was demonstrated by estimating relative DNA damage rates of three mutagenic N-nitroso compounds and styrene. Relative enzyme turnover rates for these compounds using ECL arrays and LC-UV-MS correlated well with TD 50 values for liver tumor formation in rats. Combining ECL array and nanoreactor/LC-MS technologies has the potential for rapid, high-throughput, cost-effective screening for reactive metabolites and provides chemical structure information that is complementary to conventional toxicity bioassays.


Assuntos
DNA/análise , DNA/efeitos dos fármacos , Avaliação Pré-Clínica de Medicamentos/métodos , Medições Luminescentes/métodos , Microssomos Hepáticos/metabolismo , Nanosferas , Testes de Toxicidade/métodos , Animais , Citocromo P-450 CYP2E1/metabolismo , DNA/metabolismo , Dano ao DNA/efeitos dos fármacos , Avaliação Pré-Clínica de Medicamentos/instrumentação , Sinergismo Farmacológico , Efeitos Colaterais e Reações Adversas Relacionados a Medicamentos , Eletroquímica , Humanos , Microssomos Hepáticos/efeitos dos fármacos , Estrutura Molecular , Ratos , Espectrometria de Massas em Tandem
13.
Chem Commun (Camb) ; (2): 141-54, 2008 Jan 14.
Artigo em Inglês | MEDLINE | ID: mdl-18092072

RESUMO

This feature article summarizes recent applications of ultrathin films of enzymes and DNA assembled layer-by-layer (LbL). Using examples mainly from our own research, we focus on systems developed for biocatalysis and biosensors for toxicity screening. Enzyme-poly(L-lysine) (PLL) films, especially when stabilized by crosslinking, can be used for biocatalysis at unprecedented high temperatures or in acidic or basic solutions on electrodes or sub-micron sized beads. Such films have bright prospects for chiral synthesis and biofuel cells. Excellent bioactivity and retention of enzyme structure in these films facilitates their use in detailed kinetic studies. Biosensors and arrays employing DNA-enzyme films show great promise in predicting genotoxicity of new drug and chemical product candidates. These devices combine metabolic biocatalysis, reactive metabolite-DNA reactions, and DNA damage detection. Catalytic voltammetry or electrochemiluminescence (ECL) can be used for high throughput arrays utilizing multiple LbL "spots" of DNA, enzyme and metallopolymer. DNA-enzyme films can also be used to produce nucleobase adduct toxicity biomarkers for detection by LC-MS. These approaches provide valuable high throughput tools for drug and chemical product development and toxicity prediction.


Assuntos
DNA/química , DNA/metabolismo , Enzimas/química , Enzimas/metabolismo , Fenômenos Bioquímicos , Bioquímica , Técnicas Biossensoriais , Catálise , DNA/genética , Humanos , Íons/química
14.
Curr Opin Drug Discov Devel ; 10(1): 67-73, 2007 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-17265744

RESUMO

Toxicity continues to be a major cause of drug development failures. An assessment of drug toxicity as early in the discovery/development cycle as possible is important to minimize the economic impact of discontinuing a drug late in development. Currently, batteries of biological testing protocols provide good assessment and predictions of toxicity in the general population; however, new cost-effective procedures based on simpler biochemical systems that are arranged in biosensor formats are emerging that may be very useful for early toxicity screening. In particular, biosensors employing thin films of DNA and pure metabolic enzymes show promise in predicting genotoxicity. In such biosensor systems, the enzyme/drug reaction is run in a DNA/enzyme film, which acts as a nanoreactor to produce metabolites in close proximity to high concentrations of DNA. The rate of damage to the DNA is then taken as the genotoxicity endpoint. Formation of nucleobase-drug adducts is detected by catalytic voltammetry capillary LC-MS after hydrolysis of the DNA, or optically by incorporating an electrochemiluminescent polymer into the biosensor films. Similar sensors using a redox polymer specific for 8-oxoguanine in DNA can be used to monitor oxidative stress. The most advanced genotoxicity biosensors feature arrays that can contain many metabolic enzymes, such as cytochrome P450s. Arrays based on electrochemiluminescence can be read using a simple apparatus featuring a charge-coupled device camera. These arrays can obtain relative genotoxicity data for a series of enzymes simultaneously. This new biosensor technology is compared to other emerging methods for toxicity screening.


Assuntos
Técnicas Biossensoriais/métodos , Dano ao DNA , Testes de Mutagenicidade/métodos , Animais , Técnicas Biossensoriais/instrumentação , Humanos , Testes de Mutagenicidade/tendências , Reprodutibilidade dos Testes
15.
Biosens Bioelectron ; 23(4): 492-8, 2007 Nov 30.
Artigo em Inglês | MEDLINE | ID: mdl-17825549

RESUMO

Simultaneous optical and voltammetric detection of bioactivated genotoxicity is reported for the first time employing ultrathin films of DNA, model metabolic enzymes, and electrochemiluminescence (ECL) generating metallopolymer [Ru(bpy)2PVP10]2+ on pyrolytic graphite (PG) electrodes. Cytochrome P450cam and myoglobin were used as model monoxygenase enzymes to mimic in vivo processes. Sensor film growth and component amounts were monitored using a quartz crystal microbalance (QCM). Subsequent to the enzyme reaction, DNA damage in the sensor films was measured simultaneously using a simple apparatus combining a standard voltammetry cell coupled with an optical fiber and photomultiplier tube. The model enzyme reaction converted styrene to styrene oxide, which reacts with DNA nucleobases. ECL and SWV signals increased with enzyme reaction time on the scale of several min, and provided relative enzyme turnover rates for DNA damage suitable for toxicity screening applications. Within 1 min, the sensor detects approximately 3 damaged bases per 10,000 DNA bases using this simultaneous detection.


Assuntos
Técnicas Biossensoriais/métodos , Dano ao DNA , Eletroquímica/métodos , Enzimas/química , Medições Luminescentes/métodos , Técnicas Biossensoriais/instrumentação , Cânfora 5-Mono-Oxigenase/química , Cânfora 5-Mono-Oxigenase/metabolismo , Eletroquímica/instrumentação , Eletrodos , Enzimas/metabolismo , Grafite/química , Peróxido de Hidrogênio/química , Medições Luminescentes/instrumentação
17.
Sci Rep ; 7: 40890, 2017 01 19.
Artigo em Inglês | MEDLINE | ID: mdl-28102315

RESUMO

Methylation of cytosine (C) at C-phosphate-guanine (CpG) sites enhances reactivity of DNA towards electrophiles. Mutations at CpG sites on the p53 tumor suppressor gene that can result from these adductions are in turn correlated with specific cancers. Here we describe the first restriction-enzyme-assisted LC-MS/MS sequencing study of the influence of methyl cytosines (MeC) on kinetics of p53 gene adduction by model metabolite benzo[a]pyrene-7,8-dihydrodiol-9,10-epoxide (BPDE), using methodology applicable to correlate gene damage sites for drug and pollutant metabolites with mutation sites. This method allows direct kinetic measurements by LC-MS/MS sequencing for oligonucleotides longer than 20 base pairs (bp). We used MeC and non-MeC (C) versions of a 32 bp exon 7 fragment of the p53 gene. Methylation of 19 cytosines increased the rate constant 3-fold for adduction on G at the major reactive CpG in codon 248 vs. the non-MeC fragment. Rate constants for non-CpG codons 244 and 243 were not influenced significantly by MeC. Conformational and hydrophobicity changes in the MeC-p53 exon 7 fragment revealed by CD spectra and molecular modeling increase the BPDE binding constant to G in codon 248 consistent with a pathway in which preceding reactant binding greatly facilitates the rate of covalent SN2 coupling.


Assuntos
7,8-Di-Hidro-7,8-Di-Hidroxibenzo(a)pireno 9,10-óxido/química , Citosina/química , Adutos de DNA/análise , Proteína Supressora de Tumor p53/genética , Sítios de Ligação , Cromatografia Líquida de Alta Pressão , Dicroísmo Circular , Ilhas de CpG , Citosina/análogos & derivados , Éxons , Humanos , Cinética , Simulação de Acoplamento Molecular , Conformação de Ácido Nucleico , Espectrometria de Massas em Tandem , Proteína Supressora de Tumor p53/metabolismo
18.
Methods Mol Biol ; 320: 11-8, 2006.
Artigo em Inglês | MEDLINE | ID: mdl-16719370

RESUMO

UV/Vis spectroscopy is the major means of identifying intact holocytochrome P450. The carbon monoxide complex of the intact ferrous hemoprotein exhibits a characteristic spectrum between 448 and 452 nm, considerably distinct from the usual Soret absorption peaks of hemoproteins. Methods are described for identification and quantitation of cytochrome P450 (CYP) in membranes, in tissue homogenates, and in purified form, using difference spectroscopy and absolute spectroscopy. CYP are b-type cytochromes, containing protoporphyrin IX as the prosthetic group. Methods are also provided, using alkali and pyridine, for quantitation of the hemoprotein by this prosthetic group. In its oxidized, or ferric state, CYP exists as an equilibrium mixture of high- and low-spin configurations, each with distinctive UV/Vis absorption peaks. Substrate binding causes shifts in the spin equilibrium, and methods are shown for using these shifts for quantitation of substrate binding to CYP.


Assuntos
Sistema Enzimático do Citocromo P-450/química , Sistema Enzimático do Citocromo P-450/metabolismo , Conformação Proteica , Espectrofotometria Ultravioleta , Especificidade por Substrato
19.
Pharmacol Ther ; 97(2): 139-52, 2003 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-12559387

RESUMO

Four distinct suggestions have been made to explain the mechanism of the cytochrome b(5)-imposed positive modifier action of the cytochrome P450 monooxygenase reaction. The first mechanism involves a direct input of an electron into the monooxygenase cycle. This is the second of the two electrons necessary for activation of molecular oxygen, and appears to be a rate-limiting step in the monooxygenase reaction. P450 monooxygenases all appear to be uncoupled to varying extents, releasing superoxide and hydrogen peroxide instead of oxidized substrate. A second mechanism suggests that cytochrome b(5) acts as a positive modifier of the monooxygenase by decreasing the extent of uncoupling of the monooxygenase reaction. The implication is that a slow input of the second electron allows uncoupling of a superoxide anion instead of formation of two-electron reduced oxygen. Faster input of the second electron via cytochrome b(5) would result in formation of more of the activated oxygen that reacts with substrate to form product. A third suggestion involves formation of a two-hemoprotein complex between cytochrome b(5) and cytochrome P450 that allows acceptance of two electrons from NADPH-cytochrome P450 reductase. Uncomplexed cytochrome P450 accepts an electron from the reductase, dissociates from it, binds oxygen, and re-associates with the reductase to accept another electron. Complexation with cytochrome b(5) enhances the rate of formation of the active oxygen by obviating the need for two interactions with reductase. The fourth mechanism has cytochrome b(5) serving as an effector without a reduction-oxidation role in the monooxygenation reaction. This effector function may be to enhance the breakdown of the oxygenated hemoprotein to products or to facilitate flow of electrons through the system.


Assuntos
Citocromos b5 , Fígado/fisiologia , NADPH-Ferri-Hemoproteína Redutase , Sequência de Aminoácidos , Animais , Citocromos b5/metabolismo , Citocromos b5/fisiologia , Humanos , Fígado/enzimologia , Fígado/metabolismo , NADPH-Ferri-Hemoproteína Redutase/metabolismo , NADPH-Ferri-Hemoproteína Redutase/fisiologia , Especificidade da Espécie
20.
Chem Sci ; 6(10): 5554-5563, 2015 Oct 01.
Artigo em Inglês | MEDLINE | ID: mdl-26417421

RESUMO

Damage to p53 tumor suppressor gene is found in half of all human cancers. Databases integrating studies of large numbers of tumors and cancer cell cultures show that mutation sites of specific p53 codons are correlated with specific types of cancers. If the most frequently damaged p53 codons in vivo correlate with the most frequent chemical damage sites in vitro, predictions of organ-specific cancer risks might result. Herein, we describe LC-MS/MS methodology to reveal codons with metabolite-adducted nucleobases by LC-MS/MS for oligonucleotides longer than 20 base pairs. Specifically, we used a known carcinogen, benzo[a]pyrene-7,8-dihydrodiol-9,10-epoxide (BPDE) to determine the most frequently adducted nucleobases within codons. We used a known sequence of 32 base pairs (bp) representing part of p53 exon 7 with 5 possible reactive hot spots. This is the first nucleobase reactivity study of a double stranded DNA p53 fragment featuring more than 20 base pairs with multiple reactive sites. We reacted the 32 bp fragment with benzo[a]pyrene metabolite BPDE that undergoes nucleophilic substitution by DNA bases. Liquid chromatography-mass spectrometry (LC-MS/MS) was used for sequencing of oligonucleotide products from the reacted 32 bp fragment after fragmentation by a restriction endonuclease. Analysis of the adducted p53 fragment compared with unreacted fragment revealed guanines of codons 248 and 244 as most frequently targeted, which are also mutated with high frequency in human tumors. Codon 248 is mutated in non-small cell and small cell lung, head and neck, colorectal and skin cancer, while codon 244 is mutated in small cell lung cancer, all of which involve possible BDPE exposure. Results suggest the utility of this approach for screening of adducted p53 gene by drugs and environmental chemicals to predict risks for organ specific cancers.

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