Detalhe da pesquisa
1.
Antigenic cooperation in viral populations: Transformation of functions of intra-host viral variants.
J Theor Biol
; 580: 111719, 2024 03 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-38158118
2.
Epidemiological data analysis of viral quasispecies in the next-generation sequencing era.
Brief Bioinform
; 22(1): 96-108, 2021 01 18.
Artigo
em Inglês
| MEDLINE | ID: mdl-32568371
3.
Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction.
Nucleic Acids Res
; 49(17): e102, 2021 09 27.
Artigo
em Inglês
| MEDLINE | ID: mdl-34214168
4.
Primary case inference in viral outbreaks through analysis of intra-host variant population.
BMC Bioinformatics
; 23(1): 62, 2022 Feb 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-35135469
5.
Inference of mutability landscapes of tumors from single cell sequencing data.
PLoS Comput Biol
; 16(11): e1008454, 2020 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-33253159
6.
Analysis of heterogeneous genomic samples using image normalization and machine learning.
BMC Genomics
; 21(Suppl 6): 405, 2020 Dec 21.
Artigo
em Inglês
| MEDLINE | ID: mdl-33349236
7.
Using earth mover's distance for viral outbreak investigations.
BMC Genomics
; 21(Suppl 5): 582, 2020 Dec 16.
Artigo
em Inglês
| MEDLINE | ID: mdl-33327932
8.
Unlocking capacities of genomics for the COVID-19 response and future pandemics.
Nat Methods
; 19(4): 374-380, 2022 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-35396471
9.
Inference of clonal selection in cancer populations using single-cell sequencing data.
Bioinformatics
; 35(14): i398-i407, 2019 07 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-31510696
10.
Delineating Surface Epitopes of Lyme Disease Pathogen Targeted by Highly Protective Antibodies of New Zealand White Rabbits.
Infect Immun
; 87(8)2019 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-31085705
11.
QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data.
Bioinformatics
; 34(1): 163-170, 2018 01 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-29304222
12.
Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants.
BMC Bioinformatics
; 19(Suppl 11): 360, 2018 Oct 22.
Artigo
em Inglês
| MEDLINE | ID: mdl-30343669
13.
Antigenic cooperation among intrahost HCV variants organized into a complex network of cross-immunoreactivity.
Proc Natl Acad Sci U S A
; 112(21): 6653-8, 2015 May 26.
Artigo
em Inglês
| MEDLINE | ID: mdl-25941392
14.
Inference of genetic relatedness between viral quasispecies from sequencing data.
BMC Genomics
; 18(Suppl 10): 918, 2017 Dec 06.
Artigo
em Inglês
| MEDLINE | ID: mdl-29244009
15.
GHOST: global hepatitis outbreak and surveillance technology.
BMC Genomics
; 18(Suppl 10): 916, 2017 Dec 06.
Artigo
em Inglês
| MEDLINE | ID: mdl-29244005
16.
Accurate Genetic Detection of Hepatitis C Virus Transmissions in Outbreak Settings.
J Infect Dis
; 213(6): 957-65, 2016 Mar 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-26582955
17.
Network Analysis of the Chronic Hepatitis C Virome Defines Hypervariable Region 1 Evolutionary Phenotypes in the Context of Humoral Immune Responses.
J Virol
; 90(7): 3318-29, 2015 Dec 30.
Artigo
em Inglês
| MEDLINE | ID: mdl-26719263
18.
Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling.
Bioinformatics
; 31(5): 682-90, 2015 Mar 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-25359889
19.
Nosocomial hepatitis C virus transmission from tampering with injectable anesthetic opioids.
Hepatology
; 62(1): 101-10, 2015 Jul.
Artigo
em Inglês
| MEDLINE | ID: mdl-25808284
20.
Cryptic Hepatitis B and E in Patients With Acute Hepatitis of Unknown Etiology.
J Infect Dis
; 212(12): 1962-9, 2015 Dec 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-26155829