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The amount of available biological data has exploded since the emergence of high-throughput technologies, which is not only revolting the way we recognize molecules and diseases but also bringing novel analytical challenges to bioinformatics analysis. In recent years, deep learning has become a dominant technique in data science. However, classification accuracy is plagued with domain discrepancy. Notably, in the presence of multiple batches, domain discrepancy typically happens between individual batches. Most pairwise adaptation approaches may be suboptimal as they fail to eliminate external factors across multiple batches and take the classification task into account simultaneously. We propose a joint deep learning framework for integrating batch effect removal, classification, and downstream pathway activities upon biological data. To this end, we validate it on two MALDI MS-based metabolomics datasets. We have achieved the highest diagnostic accuracy (ACC), with a notable â¼10% improvement over other methods. Overall, these results indicate that our approach removes batch effect more effectively than state-of-the-art methods and yields more accurate classification as well as biomarkers for smart diagnosis.
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Aprendizado Profundo , Calibragem , Biologia ComputacionalRESUMO
OBJECTIVE: To investigate the feasibility and effect of minimal media lower hemisternotomy for cardiac surgery under cardiopulmonary bypass (CPB) in infant congenital heart disease. METHODS: In our hospital from May 2019 to October 2019, 170 infants with congenital heart disease underwent surgical treatment (median age 6.6 months; weight 6.0 kg). They were divided into 2 groups: those with conventional chest median incision and those with minimal sternotomy. Minimal lower hemisternotomy began from the third intercostal level and ended 0.5 cm above the xiphoid, just enough to insert a small sternal distractor. RESULTS: There was no significant difference between the 2 groups in CPB time. The operation time of small incision group was slightly longer (P < .05). There was no difference in prognosis between the 2 groups, but the wound length of the small incision group was significantly reduced (4.0 ± 0.5 versus 7.8 ± 0.8 cm, P < .05). Time of intensive care unit and hospital stay was shorter among hemisternotomy patients at a statistically significant level (P < .05). CONCLUSION: Minimal media lower hemisternotomy with the basic advantages of the sternal incision can expose the various parts of the heart, which meets most cardiac exploration and surgical operation needs, and the incision may still be extended if necessary. Lower hemisternotomy appears to be a safe, effective, and versatile alternative for many surgical interventions in infants with congenital heart disease.
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Ponte Cardiopulmonar/métodos , Cardiopatias Congênitas/cirurgia , Procedimentos Cirúrgicos Minimamente Invasivos/métodos , Esternotomia/métodos , Esterno/cirurgia , Feminino , Seguimentos , Humanos , Lactente , Masculino , Duração da Cirurgia , Estudos Retrospectivos , Resultado do TratamentoRESUMO
Barley (Hordeum vulgare L.) is one of the most important cereal crop in the world, and is also the one being seriously affected by heavy metals, particularly aluminium (Al). Keeping in view the utility of barley as food, fodder and raw material for traditional beer brewing, the top-notch quality and higher production of this crop must be sustained. Phosphorus (P) has a quintessential role in plant growth with a potential to relieve symptoms caused by Al poisoning. Displaying a phytopromotive and stress alleviatory potential, Piriformospora indica (P. indica) can improve the stress tolerance in crops. Several studies have been conducted to evaluate the mechanism of Al translocation in a variety of crops including barley, however, the bio-remediative studies related to detoxification and/or sequestration of metals are scarce. Therefore, the current study was carried out to elucidate the tolerance mechanism of an Al-sensitive barley cultivar ZU9 following the colonization with P. indica and exogenous P supply by physio-biochemical, elemental, leaf ultrastructural and root proteome analyses. When compared to the Al alone treated counterparts, the Al + P + P.i treated plants exhibited 4.1-, 1.38-, 2.7 and 1.35-fold improved root and shoot fresh and dry weights, respectively. With the provision of additional phosphorus, the content of P in the root and shoot for Al + P + P.i group was reportedly higher (71.6% and 49.5%, respectively) as compared to the control group. Moreover, inoculation of P. indica combined with P improved barley leaves' cell arrangement and also maintained normal cell wall shape. The root protemics experiment was divided into three groups: Al, Al + P.i and Al + P + P.i. In total, 28, 598, and 823 differentially expressed proteins were found in Al + P.i vs. Al and Al + P + P.i vs. Al, and phenylpropanoid biosynthesis was the most prominently enriched pathway, which contributed significantly to the recuperating effects of P-P. indica interaction. Conslusively, it was found that the percentage of protein related to peroxidase was 70/359 (Al + P + P.i vs. Al) and 92/447 (Al + P + P.i vs. Al + P.i), respectively, which indicated that P. indica in combination with P might be involved in the regulation of peroxidases, increasing the adaptability of barley plants by enhanced reactive oxygen species (ROS) scavenging mechansism.
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Basidiomycota , Hordeum , Hordeum/metabolismo , Alumínio/toxicidade , Alumínio/metabolismo , Raízes de Plantas/metabolismo , Fósforo/metabolismo , Proteômica , Basidiomycota/fisiologia , Estresse FisiológicoRESUMO
Inadvertent accumulation of arsenic (As) in rice (Oryza sativa L.) is a concern for people depending on it for their subsistence, as it verily causes epigenetic alterations across the genome as well as in specific cells. To ensure food safety, certain attempts have been made to nullify this highest health hazard encompassing physiological, chemical and biological methods. Albeit, the use of mycorrhizal association along with nutrient reinforcement strategy has not been explored yet. Mechanisms of response and resistance of two rice genotypes to As with or without phosphorus (P) nutrition and Serendipita indica (S. indica; S.i) colonization were explored by root transcriptome profiling in the present study. Results revealed that the resistant genotype had higher auxin content and root plasticity, which helped in keeping the As accumulation and P starvation response to a minimum under alone As stress. However, sufficient P supply and symbiotic relationship switched the energy resources towards plant's developmental aspects rather than excessive root proliferation. Higher As accumulating genotype (GD-6) displayed upregulation of ethylene signaling/biosynthesis, root stunting and senescence related genes under As toxicity. Antioxidant defense system and cytokinin biosynthesis/signaling of both genotypes were strengthened under As + S.i + P, while the upregulation of potassium (K) and zinc (Zn) transporters depicted underlying cross-talk with iron (Fe) and P. Differential expression of phosphate transporters, peroxidases and GSTs, metal detoxification/transport proteins, as well as phytohormonal metabolism were responsible for As detoxification. Taken together, S. indica symbiosis fortified with adequate P-fertilizer can prove to be effective in minimizing As acquisition and accumulation in rice plants.
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Motion estimation is a fundamental step in dynamic medical image processing for the assessment of target organ anatomy and function. However, existing image-based motion estimation methods, which optimize the motion field by evaluating the local image similarity, are prone to produce implausible estimation, especially in the presence of large motion. In addition, the correct anatomical topology is difficult to be preserved as the image global context is not well incorporated into motion estimation. In this study, we provide a novel motion estimation framework of dense-sparse-dense (DSD), which comprises two stages. In the first stage, we process the raw dense image to extract sparse landmarks to represent the target organ's anatomical topology, and discard the redundant information that is unnecessary for motion estimation. For this purpose, we introduce an unsupervised 3-D landmark detection network to extract spatially sparse but representative landmarks for the target organ's motion estimation. In the second stage, we derive the sparse motion displacement from the extracted sparse landmarks of two images of different time points. Then, we present a motion reconstruction network to construct the motion field by projecting the sparse landmarks' displacement back into the dense image domain. Furthermore, we employ the estimated motion field from our two-stage DSD framework as initialization and boost the motion estimation quality in light-weight yet effective iterative optimization. We evaluate our method on two dynamic medical imaging tasks to model cardiac motion and lung respiratory motion, respectively. Our method has produced superior motion estimation accuracy compared to the existing comparative methods. Besides, the extensive experimental results demonstrate that our solution can extract well-representative anatomical landmarks without any requirement of manual annotation. Our code is publicly available online: https://github.com/yyguo-sjtu/DSD-3D-Unsupervised-Landmark-Detection-Based-Motion-Estimation.
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Processamento de Imagem Assistida por Computador , Processamento de Imagem Assistida por Computador/métodos , Movimento (Física)RESUMO
Plants use a variety of secondary metabolites to defend themselves against herbivore insects. Methyl salicylate (MeSA) is a natural plant-derived compound that has been used as a plant defence elicitor and a herbivore repellent on several crop plants. The aim of this study was to investigate the effect of MeSA treatment of Brassica rapa subsp. chinensis ('Hanakan' pak choi) on its interactions with peach potato aphids, Myzus persicae, and their natural enemy, Diaeretiella rapae. For this, we selected two concentrations of MeSA (75 mg/L and 100 mg/L). Our results showed that aphid performance was significantly reduced on plants treated with MeSA (100 mg/L). In a cage bioassay, the MeSA (100 mg/L)-treated plants showed lower adult survival and larviposition. Similarly, the MeSA (100 mg/L)-treated plants had a significantly lower aphid settlement in a settlement bioassay. In contrast, the M. persicae aphids did not show any significant difference between the MeSA (75 mg/L)-treated and control plants. In a parasitoid foraging bioassay, the parasitoid D. rapae also did not show any significant difference in the time spent on MeSA-treated and control plants. A volatile analysis showed that the MeSA treatment induced a significant change in volatile emissions, as high numbers of volatile compounds were detected from the MeSA-treated plants. Our results showed that MeSA has potential to induce defence in Brassica against M. persicae and can be utilised in developing sustainable approaches for the management of peach potato aphids.
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This paper proposes a deep learning framework to encode subject-specific transformations between facial and bony shapes for orthognathic surgical planning. Our framework involves a bidirectional point-to-point convolutional network (P2P-Conv) to predict the transformations between facial and bony shapes. P2P-Conv is an extension of the state-of-the-art P2P-Net and leverages dynamic point-wise convolution (i.e., PointConv) to capture local-to-global spatial information. Data augmentation is carried out in the training of P2P-Conv with multiple point subsets from the facial and bony shapes. During inference, network outputs generated for multiple point subsets are combined into a dense transformation. Finally, non-rigid registration using the coherent point drift (CPD) algorithm is applied to generate surface meshes based on the predicted point sets. Experimental results on real-subject data demonstrate that our method substantially improves the prediction of facial and bony shapes over state-of-the-art methods.
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In the design of coat hanger extrusion dies, the main objective is to provide a uniform flow rate at the die exit. Previously, a multi-rheology isothermal method model for coat hanger extrusion dies was developed to reach this objective. Polymer melts in extrusion dies commonly experience high shear rates. Viscous dissipation rooted by high shear rate may lead to significant temperature differences across the die. Due to temperature-dependency of viscosity, temperature differences may lead to nonuniform flow rates, which may significantly affect the flow rate at the die exit. As a result, a new design method is proposed to take into account the effects of temperature and viscous dissipation in the design of coat hanger dies. Although more non-Newtonian fluid rheology models can be adapted in the proposed study, as demonstration, temperature-dependent power-law and Carreau-Yasuda models are adapted in this study. Performances are compared with our isothermal method published earlier. In addition, the novel nonisothermal method is comprehensively examined where the effect of viscous dissipation is studied through Brinkman number of extrusion die. It is demonstrated that, for a low Brinkman number, both isothermal and nonisothermal design give similar flow uniformity level. However, for higher Brinkman numbers, the proposed nonisothermal method produces a design with more desirable velocity uniformity level along with a maximum improvement of 5.24% over the isothermal method. In addition, dependency of flow field on temperature, due to temperature-dependent viscosity, is studied, and it is demonstrated that fully-developed velocity profile changes as temperature increases along the flow channel. Moreover, the effect of the temperature sensitivity parameter in temperature-dependent non-Newtonian models is considered. It is demonstrated that the temperature boundary condition with the Biot number of 1.0 gives adequate results for lower values of the temperature sensitivity parameter.
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The human brain is not only efficiently but also "redundantly" connected. The redundancy design could help the brain maintain resilience to disease attacks. This paper explores subnetwork-level redundancy dynamics and the potential of such metrics in disease studies. As such, we looked into specific functional subnetworks, including those associated with high-level functions. We investigated how the subnetwork redundancy dynamics change along with Alzheimer's disease (AD) progression and with major depressive disorder (MDD), two major disorders that could share similar subnetwork alterations. We found an increased dynamic redundancy of the subcortical-cerebellum subnetwork and its connections to other high-order subnetworks in the mild cognitive impairment (MCI) and AD compared to the normal control (NC). With gained spatial specificity, we found such a redundancy index was sensitive to disease symptoms and could act as a protective mechanism to prevent the collapse of the brain network and functions. The dynamic redundancy of the medial frontal subnetwork and its connections to the frontoparietal subnetwork was also found decreased in MDD compared to NC. The spatial specificity of the redundancy dynamics changes may provide essential knowledge for a better understanding of shared neural substrates in AD and MDD.
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Doença de Alzheimer , Disfunção Cognitiva , Transtorno Depressivo Maior , Doença de Alzheimer/diagnóstico por imagem , Encéfalo/diagnóstico por imagem , Disfunção Cognitiva/diagnóstico por imagem , Depressão , Transtorno Depressivo Maior/diagnóstico por imagem , Humanos , Imageamento por Ressonância MagnéticaRESUMO
Multi-modal structural Magnetic Resonance Image (MRI) provides complementary information and has been used widely for diagnosis and treatment planning of gliomas. While machine learning is popularly adopted to process and analyze MRI images, most existing tools are based on complete sets of multi-modality images that are costly and sometimes impossible to acquire in real clinical scenarios. In this work, we address the challenge of multi-modality glioma MRI synthesis often with incomplete MRI modalities. We propose 3D Common-feature learning-based Context-aware Generative Adversarial Network (CoCa-GAN) for this purpose. In particular, our proposed CoCa-GAN method adopts the encoder-decoder architecture to map the input modalities into a common feature space by the encoder, from which (1) the missing target modality(-ies) can be synthesized by the decoder, and also (2) the jointly conducted segmentation of the gliomas can help the synthesis task to better focus on the tumor regions. The synthesis and segmentation tasks share the same common feature space, while multi-task learning boosts both their performances. In particular, for the encoder to derive the common feature space, we propose and validate two different models, i.e., (1) early-fusion CoCa-GAN (eCoCa-GAN) and (2) intermediate-fusion CoCa-GAN (iCoCa-GAN). The experimental results demonstrate that the proposed iCoCa-GAN outperforms other state-of-the-art methods in synthesis of missing image modalities. Moreover, our method is flexible to handle the arbitrary combination of input/output image modalities, which makes it feasible to process brain tumor MRI data in real clinical circumstances.
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Neoplasias Encefálicas , Glioma , Neoplasias Encefálicas/diagnóstico por imagem , Glioma/diagnóstico por imagem , Humanos , Processamento de Imagem Assistida por Computador/métodos , Aprendizado de Máquina , Imageamento por Ressonância MagnéticaRESUMO
Heavy metal accumulation in arable lands and water bodies has become one of the serious global issues among multitude of food security challenges. In particular, cadmium (Cd) concentration has been increasing substantially in the environment that negatively affects the growth and yield of important agricultural crops, especially wheat (Triticum aestivum L.). No doubt, nanotechnology is a revolutionary science but the comprehension of nanoparticle-plants interaction and its potential alleviatory role against metal stress is still elusive. Here, we investigated the mechanistic role of astaxanthin nanoparticles (AstNPs) in Cd stress amelioration and their interaction with wheat under Cd-spiked conditions. The AstNPs fabrication was confirmed through ultraviolet visible spectroscopy, where the particles showed characteristic peak at 423 nm. However, Fourier transform infrared, X-ray diffraction, scanning electron microscopy and transmission electron microscopy analyses confirmed the presence of stabilized spherical-shaped nanocrystals of AstNPs within the size range of 12.03-30.37 nm. The hydroponic application of AstNPs (100 mg L-1) to Cd-affected wheat plants increased shoot height (59%), shoot dry weight (31%), nitrogen concentration (42%), and phosphorus concentration (26%) as compared to non-treated Cd affected seedlings. Moreover, AstNPs-treated plants showed reduction in acropetal Cd translocation (29%) in contrast to plants treated with Cd only. Under Cd-spiked conditions, AstNPs-treated plants displayed an improved nutrient profile (P, N, K+ and Ca2+) with a relative decrease in Na+ content in comparison with non-treated plants. Interestingly, it was found that AstNPs restricted the translocation of Cd to aerial plant parts by negatively regulating Cd transporter genes (TaHMA2 and TaHMA3), and relieved plants from oxidative burst by activating antioxidant machinery via triggering expressions of TaSOD and TaPOD genes. Consequently, it was observed that the application of AstNPs helped in maintaining the nutrient acquisition and ionic homeostasis in Cd-affected wheat plants, which subsequently improved the physiochemical profiles of plants under Cd-stress. This study suggests that AstNPs plausibly serve as stress stabilizers for plants under heavy metal-polluted environment.
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Nanopartículas , Poluentes do Solo , Cádmio/análise , Cádmio/toxicidade , Nanopartículas/toxicidade , Plântula/química , Poluentes do Solo/análise , Triticum , XantofilasRESUMO
Deformable registration is fundamental to longitudinal and population-based image analyses. However, it is challenging to precisely align longitudinal infant brain MR images of the same subject, as well as cross-sectional infant brain MR images of different subjects, due to fast brain development during infancy. In this paper, we propose a recurrently usable deep neural network for the registration of infant brain MR images. There are three main highlights of our proposed method. (i) We use brain tissue segmentation maps for registration, instead of intensity images, to tackle the issue of rapid contrast changes of brain tissues during the first year of life. (ii) A single registration network is trained in a one-shot manner, and then recurrently applied in inference for multiple times, such that the complex deformation field can be recovered incrementally. (iii) We also propose both the adaptive smoothing layer and the tissue-aware anti-folding constraint into the registration network to ensure the physiological plausibility of estimated deformations without degrading the registration accuracy. Experimental results, in comparison to the state-of-the-art registration methods, indicate that our proposed method achieves the highest registration accuracy while still preserving the smoothness of the deformation field. The implementation of our proposed registration network is available online https://github.com/Barnonewdm/ACTA-Reg-Net.
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Encéfalo , Processamento de Imagem Assistida por Computador , Algoritmos , Encéfalo/diagnóstico por imagem , Estudos Transversais , Humanos , Processamento de Imagem Assistida por Computador/métodos , Lactente , Imageamento por Ressonância Magnética , Redes Neurais de ComputaçãoRESUMO
In the polymer sheet processing industry, the primary objective when designing a coat-hanger die is to achieve a uniform velocity distribution at the exit of the extrusion die outlet. This velocity distribution depends on the internal flow channels of the die, rheological parameters and extrusion process conditions. As a result, coat-hanger dies are often designed for each polymer based on its individual rheological data and other conditions. A multi-rheology method based on a flow network model and the Winter-Fritz equation is proposed and implemented for the calculation, design and optimization of flat sheeting polymer extrusion dies. This method provides a fast and accurate algorithm to obtain die design geometries with constant wall-shear rates and optimal outlet velocity distributions. The geometric design when complemented and validated with fluid flow simulations could be applied for multi-rheological fluid models such as the power-law, Carreau-Yasuda and Cross. This method is applied to sheet dies with both circular- and rectangular-shaped manifolds for several rheological fluids. The designed geometrical parameters are obtained, and the associated fluid simulations are performed to demonstrate its favorable applicability without being limited to only the power-law rheology. The two such designed dies exhibit 32.9 and 21.5 percent improvement in flow uniformity compared to the previous methods for dies with circular and rectangular manifolds, respectively.
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Numerical flow simulations play an important role in polymer processing. One of the essential prerequisites for accurate and precise flow simulations is to obtain accurate materials functions. In the framework of the generalized Newtonian fluid model, one needs to obtain shear viscosity as a function of the rate-of-shear and temperature-as determined by rheometry-and then fitted to a mathematical model. Often, many subjectively perform the fitting without paying attention to the relative quality of the estimated parameters. This paper proposes a unique iterative algorithm for fitting the rate-of-shear and temperature-dependent viscosity model under the time-temperature superposition (TTS) principle. Proof-of-concept demonstrations are shown using the five-parameter Carreau-Yasuda model and experimental data from small-amplitude oscillatory shear (SAOS) measurements. It is shown that the newly proposed iterative algorithm leads to a more accurate representation of the experimental data compared to the traditional approach. We compare their performance in studies of the steady isothermal flow of a Carreau-Yasuda model fluid in a straight, circular tube. The two sets of parameters, one from the traditional approach and the other from the newly proposed iterative approach, show considerable differences in flow simulation. The percentage difference between the two predictions can be as large as 10% or more. Furthermore, even in cases where prior knowledge of the TTS shifting factors is not available, the newly proposed iterative approach can still yield a good fit to the experimental data, resulting in both the shifting factors and parameters for the non-Newtonian fluid model.
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Excessive industrialization and the usage of pesticides plague the farming soils with heavy metals, reducing the quality of arable land. Assessing phytoavailability of cadmium (Cd) from growth medium to plant system is crucial and necessitates precise and timely monitoring of Cd to ensure food safety. Zinc (Zn) and silicon (Si) have singularly demonstrated the potential to ameliorate Cd toxicity and are important for agricultural production, human health, and environment in general. However, Zn-Si interaction on Cd toxicity alleviation, their effects and underlying mechanisms are still fragmentarily understood. Seven treatments were devised besides control to evaluate the single and combined effects of Zn and Si on the physio-biochemical attributes and ultrastructural fingerprints of Cd-treated rice genotypes, i.e., Cd tolerant "Xiushui-110" and Cd sensitive "HIPJ-1". Supplementation of both Zn and Si promoted plant biomass, photosynthetic parameters, ionic balance, and improved chloroplast ultrastructure with minimized Cd uptake and malondialdehyde (MDA) content due to the activation of antioxidant enzymes in Cd stressed plants. The combined effects of 10 µM Zn and 15 µM Si on 15 µM Cd displayed a greater reduction in Cd uptake and root-leaf MDA content, while enhancing photosynthetic activity, superoxide dismutase (SOD) activity and root-leaf ultrastructure particularly in HIPJ-1, whilst Xiushui-110 had an overall higher leaf catalase (CAT) activity and a higher root length and shoot height was observed in both genotypes compared to the Cd 15 µM treatment. Alone and combined Zn and Si alleviation treatments reduced Cd translocation from the root to the stem for HIPJ-1 but not for Xiushui-110. Our results confer that Zn and Si singularly and in combination are highly effective in reducing tissue Cd content in both genotypes, the mechanism behind which could be the dilution effect of Cd due to improved biomass and competitive nature of Zn and Si, culminating in Cd toxicity alleviation. This study could open new avenues for characterizing interactive effects of simultaneously augmented nutrients in crops and provide a bench mark for crop scientists and farmers to improve Cd tolerance in rice.
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AIMS: The aim of this study was to determine the relationship between atrial structural remodelling and atrial fibrillation (AF) for different types of mitral valvular diseases (MVDs). METHODS AND RESULTS: Left atrial appendages tissue samples were obtained from 24 patients with MVDs undergoing mitral valve replacement surgery. Masson's trichrome staining and immunohistochemical staining were performed to assess the extent of the fibrosis. Ultrastructural changes in left atrial appendages were examined by electron microscope. The degree of fibrosis showed significant increases in patients with AF compared with patients with sinus rhythm (SR) (P = 0.023). The collagen volume fraction (CVF) of fibrosis significantly increased in mitral stenosis and atrial fibrillation (MS-AF) compared with the mitral regurgitation and atrial fibrillation (MR-AF) group (P = 0.043). Collagen Type I levels were significantly increased in AF patients with mitral stenosis compared with AF patients with mitral regurgitation (P = 0.043). Different CVF of Matrix metalloproteinases-2 was present between the MS-SR group and the MS-AF group (P = 0.001). Electron microscopy revealed normally structured sarcomeres with a predominance of loosely packed cardiomyocytes in samples from patients with SR. Fibrotic bands, which tended to separate individual cardiomyocytes, were apparent in samples from patients with AF. CONCLUSION: Atrial structural remodelling is associated with AF patients with MVDs. Different heart rhythm statuses with different types of MVDs are associated with variable atrial structural remodelling. Different atrial structural remodelling is a mechanism that may contribute to the increased risk of AF with MVDs.
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Apêndice Atrial/patologia , Fibrilação Atrial/patologia , Estenose da Valva Mitral/patologia , Adulto , Apêndice Atrial/metabolismo , Apêndice Atrial/ultraestrutura , Fibrilação Atrial/epidemiologia , Biópsia , Colágeno Tipo I/metabolismo , Colágeno Tipo III/metabolismo , Feminino , Humanos , Imuno-Histoquímica , Masculino , Metaloproteinase 2 da Matriz/metabolismo , Metaloproteinase 9 da Matriz/metabolismo , Microscopia Eletrônica , Pessoa de Meia-Idade , Estenose da Valva Mitral/epidemiologia , Estenose da Valva Mitral/cirurgia , Fatores de Risco , Coloração e Rotulagem , Inibidor Tecidual de Metaloproteinase-1/metabolismo , Inibidor Tecidual de Metaloproteinase-2/metabolismoRESUMO
Thermal ablation is a minimally invasive procedure for treating small or unresectable tumors. Although CT is widely used for guiding ablation procedures, yet the contrast of tumors against normal soft tissues is often poor in CT scans, aggravating the accurate thermal ablation. In this paper, we propose a fast MR-CT image registration method to overlay pre-procedural MR (pMR) and pre-procedural CT (pCT) images onto an intra-procedural CT (iCT) image to guide the thermal ablation of liver tumors. At the pre-procedural stage, the Cycle-GAN model with mutual information constraint is employed to generate the synthesized CT (sCT) image from the input pMR. Then, pMR-pCT image registration is carried out via traditional mono-modal sCT-pCT image registration. At the intra-procedural stage, the region of the probe and its artifacts are automatically localized and inpainted in the iCT image. Then, an unsupervised registration network (UR-Net) is used to efficiently align the pCT with the inpainted iCT (inpCT) image. The final transform from pMR to iCT is obtained by concatenating the two estimated transforms, i.e., (i) from pMR image space to pCT image space (via sCT) and (ii) from pCT image space to iCT image space (via inpCT). The proposed method has been evaluated over a real clinical dataset and compared with state-of-the-art methods. Experimental results confirm that the proposed method achieves high registration accuracy with fast computation speed.
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Neoplasias Hepáticas , Tomografia Computadorizada por Raios X , Artefatos , Humanos , Neoplasias Hepáticas/diagnóstico por imagem , Neoplasias Hepáticas/cirurgiaRESUMO
OBJECTIVE: To evaluate the CarboMedics (CM) prosthesis function two years after mitral valve replacement, and to compare the effective orifice area (EOA) calculated by pressure half-time (PHT) method and continuity method (CON). METHODS: Forty nine patients who underwent isolated mitral valve replacement with a CM prosthesis were recruited in this study, which included 13 cases of 25 mm CM prosthesis and 36 cases of 27 mm CM prosthesis. Two years after the mitral valve replacement, transthoracic echocardiography (TTE) was performed, measuring left ventricular ejection fraction (LVEF), stroke volume mean gradient (SV), PHT, peak early mitral diastolic velocity (E velocity), mean gradient (MG), time-velocity integral of left ventricular outflow tract/time-velocity integral of mitral valve prosthesis (TVI(MVP)/TVI(LVOT)). The function of the prosthetic valve was considered normal when PHT < 130 ms, E velocity < 2.0 m/s and TVI(MVP)/TVI(LVOT) < 2.2. RESULTS: More than half (53.1%) of the patients had normal function of the prosthetic valve. No significant differences were found in PHT, MG, TVI(MVP)/TVI(LVOT), EOA or IEOA between the patients with 25 mm valve and the patients with 27 mm valve (P > 0.05). But the patients with 25 mm valve had higher E velocity than the patients with 27 mm valve (P < 0.05). The PHT method produced greater EOA than by the CON method (P < 0.05). CONCLUSION: The function of CM prosthesis is acceptable two years after the mitral valve replacement, with most patients having PHT < 130 ms, E velocity < 2.0 m/s and TVI(MVP)/TVI(LVOT) < 2.2. PHT method produces greater EOA than CON method.
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Ecocardiografia Doppler , Implante de Prótese de Valva Cardíaca , Próteses Valvulares Cardíacas , Valva Mitral/diagnóstico por imagem , Valva Mitral/fisiopatologia , Adulto , Idoso , Feminino , Humanos , Masculino , Pessoa de Meia-Idade , Valva Mitral/cirurgia , Período Pós-Operatório , Estudos Retrospectivos , Adulto JovemRESUMO
OBJECTIVE: To observe changes of right atrioventricular diameter and annulus after mitral valve replacement (MVR) in patients with and without tricuspid annuloplasty. METHODS: A total of 112 patients who underwent MVR surgery from April 2005 to December 2006 were recruited in this study. The patients were divided into two groups. Those with maximal tricuspid annulus diameter/body surface area > or = 21 mm/m2 were given tricuspid annuloplasty (TAPG, n=56). Otherwise, no tricuspid annuloplasty were performed (NTAPG, n=56). All of the patients were followed up regularly. The echocardiography were reviewed two years after the surgery. RESULTS: An average of (25.04 +/- 5.04) months had passed when the echocardiography were reviewed. The two groups had no differences in age, gender, body surface areas and cardiac functions (P>0.05). The TVPG group had more patients with atrial fibrillation than the NTVPG group (P<0.05). In the patients in the TVPG group, the right atrioventricular diameter, and maximal and minimal tricuspid annulus diameter were significantly narrowed after the operations (P<0.05). The percent shorting of tricuspid valve annulus did not change significantly (P> 0.05). The constituent ratio of TR was significantly reduced (P<0.05). However, in the patients in the NTVPG group, the right atrioventricular diameter did not change significantly (P>0.05). The maximal and minimal tricuspid annulus diameter increased (P<0.05). The percent shorting of tricuspid valve annulus did not change significantly (P>0.05). Though the constituent ratio of TR had no significant changes, 5 (13.5%) patients developed moderate or serious TR two years after the operations. CONCLUSION: Tricuspid annuloplasty (TAP) has benefits for the patients with enlarged right atrioventricular and tricuspid annulus. For those patients without enlarged right atrioventricular and tricuspid, their tricuspid valve conditions should also be carefully assessed. Because as time lapse, these patients may also develop TR.