A root-knot nematode effector targets the Arabidopsis cysteine protease RD21A for degradation to suppress plant defense and promote parasitism.

Meloidogyne incognita is one of the most widely distributed plant-parasitic nematodes and causes severe economic losses annually. The parasite produces effector proteins that play essential roles in successful parasitism. Here, we identified one such effector named MiCE108, which is exclusively expressed within the nematode subventral esophageal gland cells and is upregulated in the early parasitic stage of M. incognita. A yeast signal sequence trap assay showed that MiCE108 contains a functional signal peptide for secretion. Virus-induced gene silencing of MiCE108 impaired the parasitism of M. incognita in Nicotiana benthamiana. The ectopic expression of MiCE108 in Arabidopsis suppressed the deposition of callose, the generation of reactive oxygen species, and the expression of marker genes for bacterial flagellin epitope flg22-triggered immunity, resulting in increased susceptibility to M. incognita, Botrytis cinerea, and Pseudomonas syringae pv. tomato (Pst) DC3000. The MiCE108 protein physically associates with the plant defense protease RD21A and promotes its degradation via the endosomal-dependent pathway, or 26S proteasome. Consistent with this, knockout of RD21A compromises the innate immunity of Arabidopsis and increases its susceptibility to a broad range of pathogens, including M. incognita, strongly indicating a role in defense against this nematode. Together, our data suggest that M. incognita deploys the effector MiCE108 to target Arabidopsis cysteine protease RD21A and affect its stability, thereby suppressing plant innate immunity and facilitating parasitism.

Nearly polarization-insensitive angular filters enabled by metal-dielectric photonic crystal in the visible region.

We report on the design and fabrication of nearly polarization-insensitive angular filters, which have been developed through the optimization of one-dimensional A g/M g F 2 photonic crystals (PCs). We evaluate different initial systems for optimization and compare their results in terms of both the wavelength and angular selectivity. Our findings reveal that relaxing the strict periodic condition of initial photonic crystals with a small number of lattices has enabled improvement in the angular selectivity via Fabry-Perot resonances in dielectric layers, achieving a transmission as high as 81% at normal incidence by optimizing the dielectric layer thickness. The simulation results demonstrate that the transmitted beam through the angular filtering sample at 633 nm has allowable angles within 29° and 33° for TE and TM polarization, respectively, with a transmission over 80% at normal incidence. This proposed and demonstrated angular filter represents what we believe is a novel way to utilize 1D metal-dielectric PCs as polarization-insensitive angular filters, overcoming the main drawback of a low transmission. This angular filter will have significant applications in lighting, beam manipulation, optical coupling, and optical detectors.

Overexpression of the ZmSUS1 gene alters the content and composition of endosperm starch in maize (Zea mays L.).

MAIN CONCLUSION: ZmSUS1 increases the amylose content of maize by regulating the expression of Shrunken2 (Sh2) and Brittle2 (Bt2) which encode the size subunits of endosperm ADP-glucose pyrophosphorylase, and Granule bound starchsynthase1 (GBSS1) and Starch synthase1 (SS1). Cereal crops accumulate starch in seeds as an energy reserve. Sucrose Synthase (SuSy) plays an important role in grain starch synthesis. In this study, ZmSUS1 was transformed into maize inbred line KN5585, and transgenic plants were obtained. Compared with the non-transgenic negative control, the content and activity of SuSy were significantly increased, the amylose content in mature seeds of transgenic maize increased by 41.1-69.2%, the total starch content increased by 5.0-13.5%, the 100-grain weight increased by 19.0-26.2% and the average diameter of starch granules increased by 10.8-17.2%. These results indicated that overexpression of ZmSUS1 can significantly improve the traits of maize seeds and obtain new lines with high amylose content. It was also found that the overexpression of ZmSUS1 may increase the amylose content by altering the expression of endosperm ADP-glucose pyrophosphorylase (AGPase) subunits Shrunken2 (Sh2) and Brittle2 (Bt2). Moreover, the ectopic expression of ZmSUS1 also affected the expression of Granule bound starch synthase1 (GBSS1) and Starch synthase1 (SS1) which encode starch synthase. This study proved the important role of ZmSUS1 in maize starch synthesis and provided a new technology strategy for improving maize starch content and yield.

Prognostic Value of Systemic Inflammation Response Index in Acute Type A Aortic Dissection.

BACKGROUND: The study aimed to evaluate the prognostic value of preoperative systemic inflammation response index (SIRI) for acute type A aortic dissection (ATAD) following open surgery. METHODS AND RESULTS: Totally, 410 ATAD patients underwent open surgery from 2019 to 2021 were enrolled in the study. Among the patients, the in-hospital mortality was 14.4%. Cox regression (95%CI 1.033-1.114p < 0.001) and receiver operating characteristic curve analysis (AUC = 0.718, p < 0.001) demonstrated the prognostic role of SIRI for in-hospital mortality after surgery. The optimal cut-off value of SIRI for in-hospital mortality was identified as 9.43 by maximally selected Log-Rank statistics. The patients were divided into high SIRI group (SIRI ≥ 9.43) and low SIRI group (SIRI < 9.43)) after the linear inverse relationship between SIRI and hazard ratio for in-hospital mortality was demonstrated by restricted cubic spline analysis (p = 0.0742). The Kaplan-Meier analysis illustrated that in-hospital mortality increased significantly in high SIRI group (p < 0.001). In addition, elevating SIRI was significantly associated with the incidence of coronary sinus tear (95%CI 1.020-4.475p = 0.044). Furthermore, the incidence rate of postoperative complications including renal failure (p < 0.001) and infection (p = 0.019) was higher in high SIRI group. CONCLUSION: The study indicated that preoperative SIRI could provide strong prognostic value for in-hospital mortality in ATAD patients following open surgery. Thus, SIRI was a promising biomarker for risk stratification and management prior to open surgery.

Real-Time Monitoring Method for Layered Compaction Quality of Loess Subgrade Based on Hydraulic Compactor Reinforcement.

Hydraulic compactor is an efficient reinforcement machine for loess subgrade. However, it is difficult to control the layered compaction quality of the subgrade. This research presents a real-time layered compactness monitoring method for hydraulic compactor reinforcement of subgrade in loess areas. The hydraulic force coefficient is first introduced, and the dynamic response model of the hydraulic rammer and soil is established. The relationship between the acceleration of the hydraulic rammer and the compactness of subgrade is then obtained based on the collision theory in elastic half space. A full-scale test using a hydraulic compactor to reinforce loess subgrade was also carried out. Results show that the hydraulic compactor obtains the effective influence depth for the reinforcement of loess subgrade. Within the effective reinforcement depth, the relationship between the peak acceleration of the rammer and the layered compactness of subgrade can be well fitted by a quadratic function model. The layered compactness of the subgrade and the working state of the hydraulic compactor can then be remotely monitored at a mobile terminal in real time. Furthermore, the monitoring technology was applied to Huangling-Yan'an Expressway in China, significantly improving the accuracy and efficiency of real-time monitoring of the layered compactness of subgrade in the loess area.

Controllable linear asymmetric transmission and perfect polarization conversion in a terahertz hybrid metal-graphene metasurface.

We propose a three layered metal-graphene-metal metasurface to investigate the controllable linear asymmetric transmission and perfect polarization conversion in THz regime, by using the finite-difference time-domain (FDTD) method. An on-to-off control of asymmetric transmission and perfect polarization conversion is achieved by changing the Fermi energy of graphene from 0.8 eV to 0 eV. We present the electric field distribution and Fabry-Perot-like cavity model to analyze the working mechanisms. By gradually shifting the Fermi energy of graphene, two functions are realized, i.e., controllable linear asymmetric transmission and controllable total transmission with near perfect polarization conversion.

ß-blockers and risk of all-cause mortality in patients with chronic heart failure and atrial fibrillation-a meta-analysis.

BACKGROUND: Effects of ß-blockers on outcomes in patients with chronic heart failure (CHF) and atrial fibrillation (AF) is still in controversy. METHODS: Searching was conducted by using keywords "atrial fibrillation", and "heart failure" in PubMed, MEDLINE and Embase databases before November 30, 2017. Prospective studies [i.e. randomized control trials (RCTs), post-hoc analysis of RCTs, prospective cohort studies and registry studies] that studied the effect of ß-blockers and all-cause mortality in patients with CHF and AF were included. The analysis was stratified by study design. RESULTS: We identified 12 studies, including 6 post-hoc analysis of RCTs and 6 observational studies (including prospective registry studies and prospective cohort studies), which enrolled 38,133 patients with CHF and AF. Overall, ß-blockers treatment was associated with significant decrease in all-cause mortality [Risk Ratio (RR) =0.73; 95% Confidence Interval (CI) 0.65-0.82, P < 0.001]. When stratified by study design, ß-blockers treatment was associated with 34% reduction in patients with CHF and AF in observational study (RR = 0.66; 95% CI 0.58-0.76, P < 0. 001), but not in post-hoc analysis of RCT (RR = 0.87; 95% CI 0.74-1.02, P = 0.09). CONCLUSIONS: ß-blockers treatment was associated with significantly decrease the risk of all-cause mortality in patients with AF-CHF and it was only seen in observational study group, but not in subgroup analysis of RCT group. Further large RCTs are required to verify the effect of ß-blockers treatment on patients with CHF and AF. The main limitation of this study is the lack of individual data on patients in each study.

The top tertile of hematocrit change during hospitalization is associated with lower risk of mortality in acute heart failure patients.

BACKGROUND: Hemoconcentration has been proposed as surrogate for changes in volume status among patients hospitalized with acute heart failure (AHF) and is associated with a favorable outcome. However, there is a dearth of research assessing the clinical outcomes of hospitalized patients with hemoconcentration, hemodilution and unchanged volume status. METHODS: We enrolled 510 consecutive patients hospitalized for AHF from April 2011 to July 2015. Hematocrit (HCT) levels were measured at admission and either at discharge or on approximately the seventh day of admission. Patients were stratified by delta HCT tertitles into hemodilution (ΔHCT ≤ - 1.6%), no change (NC, -1.6% < ΔHCT ≤1.5%) and hemoconcentration (ΔHCT >1.5%) groups. The endpoint was all-cause death, with a median follow-up duration of 18.9 months. RESULTS: Hemoconcentration was associated with lower left ventricle ejection fraction, as compared with NC and hemodilution groups, while renal function at entry, New York Heart Association class IV, and in-hospital worsening renal function (WRF) were not significantly different across the three groups. After multivariable adjustment, hemoconcentration had a lower risk of mortality as compared with hemodilution [hazard ratio (HR) 0.39, 95% confidence interval (CI) 0.24-0.63, P < 0.001], or NC (HR 0.54, 95% CI 0.33-0.88, P = 0.015], while hemodilution and NC did not have significantly differ in mortality (HR 0.72, 95% CI 0.48-1.10, P = 0.130). CONCLUSIONS: In patients hospitalized with AHF, an increased HCT during hospitalization is associated with a lower risk of all-cause mortality than a decreased or unchanged HCT. Furthermore, all-cause mortality does not differ significantly between patients with unchanged and decreased HCT values.

Mannan-binding lectin at supraphysiological concentrations inhibits differentiation of dendritic cells from human CD14+ monocytes.

Mannan-binding lectin (MBL), a circulating C-type lectin, is an important member of the defense collagen family. It exhibits a high potential for recognizing broad categories of pathogen-associated molecular patterns and initiating complement cascade responses. DCs are well-known specialist antigen-presenting cells that significantly trigger specific T cell-mediated immune responses. In our previous study, it was observed that high concentrations of MBL significantly attenuate LPS-induced maturation of monocyte-derived DCs (MoDCs). In the current study, it was postulated that MBL at similar supraphysiological concentrations would affect early differentiation of MoDCs in some way. CD14(+) monocytes from human peripheral blood mononuclear cells were cultured with granulocyte-macrophage colony-stimulating factor and IL-4 in the presence or absence of physiological (1 µg/mL) and supraphysiological concentrations (20 µg/mL) of MBL protein, respectively. Phenotypic analysis indicated that the differentiated DCs incubated with high concentrations of MBL expressed MHC class II and costimulatory molecules (e.g., CD80 and CD40) more weakly than did control groups. The secretion of IL-10 and IL-6 increased markedly, whereas their mixed lymphocyte reaction-stimulating capacity decreased. Members of the signal transducer and activator of transcription family were also found to be differentially regulated. Thus, beyond the role of MBL as an opsonin, our data reveal a possible inhibitory effect of MBL at high concentrations in monocyte-DC transition, which probably provides one way of regulating adaptive immune responses by strict regulation of DCs, making MBL a better prospect for controlling relevant pathological events such as autoimmune diseases.

Review of casualties and losses of UK fishing vessels from 2013 to 2020.

This study analyses the relationship between vessel groups (small, medium and large) and casualty or loss type of UK fishing vehicles based on a summary of information concerning casualties and losses that occurred on fishing vessels in the UK from 2013 to 2020. The study establishes loss of control as the main cause of casualty occurrences for all fishing vessels. Further, flooding/foundering is the main contributor to the loss of fishing vessels smaller than 24 m in length, and grounding/stranding is the main contributor to the loss of fishing vessels 24 m or longer. Fishing vessels below 15 m in length comprise the majority of casualties and losses, while medium-size vessels (15 m or longer, but less than 24 m) make the highest average contribution per vessel to casualties.

A Fused-Ring Electron Acceptor with Phthalimide-Based Ending Groups for Efficient Ternary Organic Solar Cells.

The ternary strategy has been widely applied and recognized to be a valid strategy to enhance the organic photovoltaics' (OPVs) performance. Here, a new fused-ring electron acceptor, BTP-PIO, is designed and synthesized, whose ending groups were replaced by a phthalimide-based group (2-butylcyclopenta[f]isoindole-1,3,5,7(2H,6H)-tetraone) from traditional 2-(3-oxo-2,3-dihydro-1H-inden-1-ylidene)malononitrile. The phthalimide-based ending groups endow BTP-PIO with the highest lowest unoccupied molecular orbital (LUMO) level and wider band gap than those of Y6. The ternary device based on PM6:Y6 with BTP-PIO as a guest electron acceptor achieved an elevated open-circuit voltage (VOC) of 0.848 V, a short-circuit current density (JSC) of 27.31 mA cm-2, and a fill factor (FF) of 73.9%, generating a remarkable power conversion efficiency (PCE) of 17.10%, which is superior to the PM6:Y6 binary device of 16.08%. The ternary device exhibited improved charge transfer, suppressed carrier recombination, and lower energy loss. BTP-PIO exhibited a good miscibility with Y6, and an alloy phase between BTP-PIO and Y6 was formed in the ternary bulk heterojunction, leading to better phase separation and molecular packing. This research reveals that ending group modification of Y6 derivatives is a feasible way to produce highly efficient ternary devices.

The Honey Bee Colony's Criterion for Candidate Selection: "Ongoing" or "One-Shot"?

In the honey bee, the queen's death severely threatens the survival of the colony. In an emergency, new queens are reared from young worker larvae, where nepotism is thought to influence the choice of queen candidates by the workers. This article simulates the emergency queen-rearing process in a colony under natural conditions and records the results of colony selection (without nepotism). In queenless colonies, worker larvae aged three days or younger were preferred for queen rearing, and 1-day-old larvae were the first to be selected for the queen-cell cups. In the capping stage, the number of capped queen cells selected from the 1-day-old larvae was much higher than the 3-day-old larvae. On the first day, the number of emerging queens reared from 1-day-old larvae was significantly higher than the queens reared from 2-day-old and 3-day-old larvae. However, there was no significant difference in the birth weights of queens reared from 1-day-old, 2-day-old, or 3-day-old larvae. When the newly emerged queens were introduced into the original queenless colony, 1-day-old larval queens triggered more worker followers than 2-day-old larval queens. The expression of ovarian development-related genes (vg, hex110, and Jh) was higher in queens reared from 1-day-old larvae than those reared from 2-day-old and 3-day-old larvae, indicating that the quality of the queens reared from 1-day-old larvae is superior. This study shows that in the absence of nepotism, the colony selection of queen candidates at the larval stage, capping stage, and emerging stage is not final, but is gradually optimized to maximize colony development through a "quality control" process.

The mechanism of Andrena camellia in digesting toxic sugars.

Camellia oleifera is an economically and medicinally valuable oilseed crop. Honeybee, the most abundant pollinator, rarely visits C. oleifera because of the toxic sugars in the nectar and pollen. These toxic sugars cannot be fully digested by honeybees and inhibit the process of synthesizing trehalose in honeybees. C. oleifera exhibits self-incompatibility, and its pollination heavily depends on Andrena camellia. However, the mechanism by which A. camellia digests toxic sugars in C. oleifera nectar and pollen remains unknown. Consequently, we identified and validated four single-copy genes (α-N-acetyl galactosamine-like, galactokinase, galactose-1-phosphate uridyltransferase, and UDP-galactose-4'-epimerase, abbreviated as NAGA-like, GALK, GALT, and GALE) essential for detoxifying toxic sugars in vitro. Then, we cloned the four genes into Escherichia coli, and expressed enzyme successfully degraded the toxic sugars. The phylogeny suggests that the genes were conserved and functionally diverged among the evolution. These results provide novel insights into pollinator detoxification during co-evolution.

Multifunctional Electrostatic Droplet Manipulation on the Femtosecond Laser-Prepared Slippery Surfaces.

A strategy to manipulate droplets on the lubricated slippery surfaces using tribostatic electricity is proposed. By employing femtosecond laser-induced porous microstructures, we prepared a slippery surface with ultralow adhesion to various liquids. Electrostatic induction causes the charges within the droplet to be redistributed; thus, the droplet on the as-prepared slippery surfaces can be guided by electrostatic force under the electrostatic field, with controllable sliding direction and unlimited transport distance. The combination of electrostatic interaction and slippery surfaces allows us to manipulate droplets with a wide volume range (from 100 nL to 0.5 mL), charged droplets (including electrostatic attraction and repulsion), corrosive droplets, and even organic droplets with ultralow surface tension. In addition, droplets on tilted surfaces, curved surfaces, and inverted slippery surfaces can also be manipulated. Especially, the slippery surfaces can even allow the electrostatic interaction to manipulate alcohol with surface tension as low as 22.3 mN/m and liquid droplets suspended on a downward surface, which is not possible with reported superhydrophobic substrates. The features of slippery surfaces make the electrostatic manipulation successfully applied in versatile droplet manipulation, droplet patterning, chemical microreaction, transport of solid cargo, targeted delivery of chemicals, and liquid sorting.

Cucumber (Cucumis sativus L.) with heterologous poly-γ-glutamic acid has skin moisturizing, whitening and anti-wrinkle effects.

Three genes involved in poly-γ-glutamic acid(γ-PGA)synthesis cloned from Bacillus licheniformis were transformed into cucumber for the first time. Compared with control, its water content increased by 6-14 % and water loss rate decreased by 11-12 %. In zebrafish and human skin experiments, the moisturizing effect of transgenic cucumber was significantly higher than that of CK, γ-PGA and hyaluronic acid group. Transgenic cucumber reduced facial wrinkles and roughness by 19.58 % and 24.97 %, reduced skin melanin content by 5.27 %, increased skin topological angle and L-value by 5.89 % and 2.49 %, and increased the R2 and Q1 values of facial elasticity by 7.67 % and 5.64 %, respectively. The expressions of aqp3, Tyr, silv and OCA2 were down-regulated, eln1, eln2, col1a1a and col1a1b were up-regulated in zebrafish after treated with transgenic cucumber. This study provides an important reference for the endogenous synthesis of important skin care functional molecules in plants.

Xylem vessel type and structure influence the water transport characteristics of Panax notoginseng.

Panax notoginseng plays a very important role in medicinal and economic value. The restriction imposed by the hydraulic pathway is considered to be the main limitation on the optimal growth state of Panax notoginseng. The flow resistance and water transport efficiency of vessel were affected by vessel type and secondary thickening structure. The vessel structure parameters of Panax notoginseng were obtained by experimental anatomy, and the flow resistance characteristics were analyzed by numerical simulation. The results showed that the xylem vessels had annular thickening and pit thickening walls. The flow resistance coefficient (ξ) of the pitted thickening vessel was significantly lower than that of annular thickening vessel in four cross-sectional types. The ξ of the circular cross-sectional vessel was the largest, followed by the hexagon, pentagon cross-sectional vessel and the lowest was the quadrilateral cross-sectional vessel, and the structure coefficient (S) was just the opposite. The ξ of the vessel model was positively correlated with the annular height, pitted width and pitted height, and negatively correlated with the annular inscribed circle diameter, annular width, annular spacing, pitted inscribed circle diameter and pitted spacing. Among them, annular (pitted) height and the annular (pitted) inscribed circle diameter had a great influence on the ξ. The increasing and decreasing trend of the S and ξ were opposite in the change of annular (pitted) inscribed circle diameter, and consistent in the change of in other structural parameters, indicating that the secondary wall thickening structure limited the inner diameter of the vessel to maintain a balance between flow resistance and transport efficiency.

Response of Wheat, Maize, and Rice to Changes in Temperature, Precipitation, CO2 Concentration, and Uncertainty Based on Crop Simulation Approaches.

The influence of global climate change on agricultural productivity is an essential issue of ongoing concern. The growth and development of wheat, maize, and rice are influenced by elevated atmospheric CO2 concentrations, increased temperatures, and seasonal rainfall patterns. However, due to differences in research methodologies (e.g., crop models, climate models, and climate scenarios), there is uncertainty in the existing studies regarding the magnitude and direction of future climate change impacts on crop yields. In order to completely assess the possible consequences of climate change and adaptation measures on crop production and to analyze the associated uncertainties, a database of future crop yield changes was developed using 68 published studies (including 1842 samples). A local polynomial approach was used with the full dataset to investigate the response of crop yield changes to variations in maximum and minimum temperatures, mean temperature, precipitation, and CO2 concentrations. Then, a linear mixed-effects regression model was utilized with the limited dataset to explore the quantitative relationships between them. It was found that maximum temperature, precipitation, adaptation measure, study area, and climate model had significant effects on changes in crop yield. Crop yield will decline by 4.21% for each 1 °C rise in maximum temperature and increase by 0.43% for each 1% rise in precipitation. While higher CO2 concentrations and suitable management strategies could mitigate the negative effects of warming temperatures, crop yield with adaptation measures increased by 64.09% compared to crop yield without adaptation measures. Moreover, the uncertainty of simulations can be decreased by using numerous climate models. The results may be utilized to guide policy regarding the influence of climate change and to promote the creation of adaptation plans that will increase crop systems' resilience in the future.

Integrated gene profiling of fine-needle aspiration sample improves lymph node metastasis risk stratification for thyroid cancer.

BACKGROUND: Lymph node metastasis risk stratification is crucial for the surgical decision-making of thyroid cancer. This study investigated whether the integrated gene profiling (combining expression, SNV, fusion) of Fine-Needle Aspiration (FNA) samples can improve the prediction of lymph node metastasis in patients with papillary thyroid cancer. METHODS: In this retrospective cohort study, patients with papillary thyroid cancer who went through thyroidectomy and central lymph node dissection were included. Multi-omics data of FNA samples were assessed by an integrated array. To predict lymph node metastasis, we built models using gene expressions or mutations (SNV and fusion) only and an Integrated Risk Stratification (IRS) model combining genetic and clinical information. Blinded histopathology served as the reference standard. ROC curve and decision curve analysis was applied to evaluate the predictive models. RESULTS: One hundred and thirty two patients with pathologically confirmed papillary thyroid cancer were included between 2016-2017. The IRS model demonstrated greater performance [AUC = 0.87 (0.80-0.94)] than either expression classifier [AUC = 0.67 (0.61-0.74)], mutation classifier [AUC = 0.61 (0.55-0.67)] or TIRADS score [AUC = 0.68 (0.62-0.74)] with statistical significance (p < 0.001), and the IRS model had similar predictive performance in large nodule [>1 cm, AUC = 0.88 (0.79-0.97)] and small nodule [≤1 cm, AUC = 0.84 (0.74-0.93)] subgroups. The genetic risk factor showed independent predictive value (OR = 10.3, 95% CI:1.1-105.3) of lymph node metastasis in addition to the preoperative clinical information, including TIRADS grade, age, and nodule size. CONCLUSION: The integrated gene profiling of FNA samples and the IRS model developed by the machine-learning method significantly improve the risk stratification of thyroid cancer, thus helping make wise decisions and reducing unnecessary extensive surgeries.

Soluble perinone isomers as electron transport materials for p-i-n perovskite solar cells.

We synthesized three soluble perinone isomers as electron transport materials in p-i-n perovskite solar cells. The cis-isomer BBIN-2 possesses higher LUMO level and electron mobility than the trans-isomers. The BBIN-2 devices showed the highest power conversion efficiency of 19.36%, demonstrating the potential of perinone dyes in perovskite solar cells.

Effects of different water management and fertilizer methods on soil temperature, radiation and rice growth.

In recent decades, the application of organic fertilizer to agricultural soils has attracted wide attention. However, few studies have carefully explored the effects of humic acid fertilizer on soil temperature, radiation, and the physiology of plant leaves, especially when coupled with different irrigation methods. To provide a better growing environment for crops and explore the best regulation method of humic acid fertilizer and irrigation in the farmland soil environment on the Songnen Plain, China, through field experiments, we selected rice as the test crop and applied humic acid fertilizer to the soil with different irrigation methods. The effects of different humic acid fertilizers and irrigation methods on the soil temperature and radiation changes during different growth stages were examined, and the subtle differences in agronomic and fluorescence characteristics in different growth stages of rice plants were compared. The results showed that the soil temperature was not significantly different among all the treatments. However, radiation interception was obviously different, and the best value was observed in the CT5 treatment. The fluorescence indices and leaf chlorophyll relative content (SPAD) differed with the change in humic acid fertilizer application and irrigation methods. At the jointing and heading stages, the Fv /Fm values of the CT5, FT5 and WT5 treatments were larger than those of the other treatments, and the best value was recorded in the CT5 treatment. The differences in NPQ at these two stages were significant, and the NPQ in the CT5 treatment was significantly higher than that in the other treatments (P < 0.05). In general, the QP under control irrigation was greater than that under flood and wet irrigation (P < 0.05). Moreover, there were no significant differences among the gradients under the different humic acid fertilizer application methods in terms of QP (P > 0.05). Additionally, SPAD values were higher under the CT5 and FT5 treatments.