Hsp70 and Hsp40 attenuate formation of spherical and annular polyglutamine oligomers by partitioning monomer.

Protein conformational changes that result in misfolding, aggregation and amyloid fibril formation are a common feature of many neurodegenerative disorders. Studies with beta-amyloid (Abeta), alpha-synuclein and other amyloid-forming proteins indicate that the assembly of misfolded protein conformers into fibrils is a complex process that may involve the population of metastable spherical and/or annular oligomeric assemblies. Here, we show by atomic force microscopy that a mutant huntingtin fragment with an expanded polyglutamine repeat forms spherical and annular oligomeric structures reminiscent of those formed by Abeta and alpha-synuclein. Notably, the molecular chaperones Hsp70 and Hsp40, which are protective in animal models of neurodegeneration, modulate polyglutamine aggregation reactions by partitioning monomeric conformations and disfavoring the accretion of spherical and annular oligomers.

In situ organization of gold nanorods on mixed self-assembled-monolayer substrates.

A method is described for assembling gold nanorods, end-to-end, into long chains attached on top of a mixed self-assembled monolayer that has been functionalized with streptavidin. Methods to prepare chains of nanorods in colloidal suspension have been reported by others, but our protocol offers a way to directly form such structures on a substrate. The rods are spaced approximately 5 nm apart in the resulting chains, which extend for over a micrometer in length. The assembly and morphology of the nanorod structures were characterized by surface plasmon resonance spectroscopy, as well as by scanning electron microscopy and scanning probe microscopy. Structures of this type could conceivably serve as plasmonic waveguides in future nanodevices.

Assembly of nanomaterials through highly ordered self-assembled monolayers and peptide-organic hybrid conjugates as templates.

Synthesis and processing techniques have now been established for obtaining high quality monodisperse nanocrystals of various metallic and semiconducting materials, fullerenes of distinct properties, single- and multi-wall carbon nanotubes, polymeric dendrimers with tailored functionalities, as well as other nanophase constructs. The next key step towards novel applications of nanostructured materials concerns their positioning, arrangement, and connection into functional networks without mutual aggregation. In this review, we highlight the recent progress of using anthracene- and pyrene-based self-assembling molecules with tunable energetic (pi-pi interactions, hydrogen bonding, dipole-dipole interactions) and variable geometries to create stable, highly ordered, and rigid self-assembled monolayer (SAM) templates with adjustable superlattices on crystalline substrates. Based on aromatic SAM templates, stable and highly ordered self-assembled structures of optoelectronically active C60 have been obtained and shown to exhibit desirable electrical and optoelectronic properties, such as nonlinear transporting effect for molecular electronics and efficient photocurrent generation for mimicking photosynthesis in nature. By using genetically engineered polypeptides with surface recognition for specific inorganics, selective integration of nanoparticles onto aromatic SAM templates have also been realized. Through a combination of spatially confined surface chemical reaction and microcontact printing, sub-micron arrays of peptide-organic hybrid conjugates were successfully generated to serve as templates to achieve the patterned assembly of nanoparticles.

Structural changes in self-assembled monolayers initiated by ultraviolet light.

Self-assembled monolayers of 2-anthracenethiol and 2-naphthalenethiol on gold (111) were irradiated with low-power UV light. Scanning tunneling microscope images recorded in situ show unusual structural changes. In the case of 2-anthracenethiol, structures measuring 4-7 nm wide and 30-40 nm in length are formed. Images taken 10 min after irradiation ceased to show further surface reorganization. With 2-naphthalenethiol SAMs, smaller structures form upon irradiation, which subsequently revert to resemble the original structure after time.

Acid-cleavable polymeric core-shell particles for delivery of hydrophobic drugs.

Here we describe the combined use of acid-labile microgel approach and RAFT-mediated seeded dispersion polymerization technique to prepare an acid-cleavable core-shell like polymeric colloidal system for the delivery of hydrophobic drugs at slightly acidic sites. A new bisacrylate acetal crosslinker was copolymerized with n-butyl acrylate (BA) in the presence of a RAFT agent using a dispersion polymerization technique, which yielded crosslinked spherical particles with the size ranging between 150 and 500 nm. The particles were cleaved in a pH-dependent manner similar to the acid-labile hydrolysis behaviour of the crosslinker. In order to mask the hydrophobic surface of the particles, polyethylene glycol acrylate (PEG-A) was grafted onto poly(BA) seed particles via the RAFT agent groups on the particle surface. The acidic-site selective delivery potential of the poly(BA)-g-poly(PEG-A) particles was assessed in-vitro using a lipophilic fluorescent dye as a model hydrophobic drug. Ca. 73% and 34% of the total dye loaded in the particles was found to be released at pH 5.0 and 7.4 in 24 h, respectively. The growth of human neuroblastoma cells was not affected by the incubation with the core-shell particles and their cleavage by-products up to 3 mg/ml concentration. The physicochemical and the functional features support the potential value of the acid-cleavable poly(BA) core-poly(PEG-A) shell particles as carriers for the delivery of hydrophobic drugs at acidic sites.

Observation of phase transition of thermo-responsive poly(NIPA)-PEI block copolymers by STM.

N-isopropylacrylamide (NIPA) homopolymers having carboxylic acid-end groups were synthesized by using mercaptoacetic acid (MAA) as the chain transfer agent. Polymerization was achieved in ethanol using azobisisobutyronitrile (AIBN) as the initiator. Average molecular weight of the homopolymer estimated by titration was 1958. This carboxylic acid-ended poly(NIPA) was then copolymerized with polyethylenimine (PEI, M(W)-2000) using a water soluble carbodiimide (EDAC). With respect to carboxyl-ended poly(NIPA), the block copolymers exhibited a pH dependent-temperature sensitivity and higher LCST values in acidic pH. Scanning tunneling microscopy (STM) images of both the homopolymer and the copolymer were obtained at 25 and 45 degrees C with tip-sample bias voltages of up to 800 mV and tunneling currents approximately 1 nA. These images showed that STM can be used to visualize both the formation of copolymer chains and their structure, and also their stimuli-responsive behavior.

Atomic-resolution STM structure of DNA and localization of the retinoic acid binding site.

Single-molecule imaging by scanning tunnelling microscopy (STM) yields the atomic-resolution (0.6A) structure of individual B-type DNA molecules. The strong correlation between these STM structures and those predicted from the known base sequence indicates that sequencing of single DNA molecules using STM may be feasible. There is excellent agreement between the STM and X-ray structures, but subtle differences exist due to radial distortions. We show that the interactions of other molecules with DNA, their binding configurations, and the structure of these complexes can be studied at the single-molecule level. The anti-cancer drug retinoic acid (RA) binds selectively to the minor groove of DNA with up to 6 RA molecules per DNA turn and with the plane of the RA molecule approximately parallel to the DNA symmetry axis. Similar studies for other drug molecules will be valuable in the a priori evaluation of the effectiveness of anti-cancer drugs.

Microspotting streptavidin and double-stranded DNA arrays on gold for high-throughput studies of protein-DNA interactions by surface plasmon resonance microscopy.

We present two strategies for microspotting 10 x 12 arrays of double-stranded DNAs (dsDNAs) onto a gold-coated glass slide for high-throughput studies of protein-DNA interactions by surface plasmon resonance (SPR) microscopy. Both methods use streptavidin (SA) as a linker layer between a biotin-containing mixed self-assembled monolayer (SAM) and biotinylated dsDNAs to produce arrays with high packing density. The primary mixed SAM is produced from biotin- and oligo(ethylene glycol)-terminated thiols bonded as thiolates onto the gold surface. In the first method, a robotic microspotter is used to deliver nanoliter droplets of dsDNA solution onto a uniform layer of this SA ( approximately 2 x 10(12) SA/cm(2)). SPR microscopy shows a density of (5-6) x 10(11) dsDNA/cm(2) (0.2-0.3 dsDNA/SA) in the array elements. The second method uses instead a microspotted array of this SA linker layer, onto which the microspots of dsDNA are added with spatial registry. SPR microscopy before addition of the dsDNA shows a SA coverage of 2 x 10(12) SA/cm(2) within the spots and a dsDNA density of 8.5 +/- 3.5 x 10(11) dsDNA/cm(2) (0.3-0.7 dsDNA/SA, depending on the length of dsDNA) after dsDNA spotting. We demonstrate the ability to simultaneously monitor protein binding with the SPR microscope in many 200-microm spots with 1-s time resolution and sensitivity to <1 pg of protein.

A streptavidin linker layer that functions after drying.

The ability of streptavidin (SA) to simultaneously bind four biotins is often used in linker layers, where a biotinylated molecule is linked to a biotin-functionalized surface via SA. For biosensor and array applications, it is desirable that the SA linker layer be stable to drying and rehydration. In this study it was observed that a significant decrease in binding capacity of a SA layer occurred when that layer was dried. For this study a SA linker layer was constructed by binding SA to a biotin-containing alkylthiolate monolayer (BAT/OEG) self-assembled onto gold. Its stability after drying was investigated using surface plasmon resonance (SPR). Approximately a quarter of the SA layer was removed from the BAT/OEG surface upon drying and rehydration, suggesting disruption of SA-biotin binding when dry. This resulted in the dried SA layer losing approximately 40% of its biotinylated ferritin (BF) binding capacity. Coating the layer with trehalose before drying was found to inhibit the loss of SA from the BAT/OEG surface. SPR showed that the trehalose-protected SA linker layer retained approximately 91% of its original BF binding capacity after drying and rehydration. Atomic force microscopy, which was used to image individual surface-bound SA and BF molecules, qualitatively confirmed these observations.