Detalhe da pesquisa
1.
Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction.
Nucleic Acids Res
; 49(17): e102, 2021 09 27.
Artigo
em Inglês
| MEDLINE | ID: mdl-34214168
2.
Inference of mutability landscapes of tumors from single cell sequencing data.
PLoS Comput Biol
; 16(11): e1008454, 2020 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-33253159
3.
Using earth mover's distance for viral outbreak investigations.
BMC Genomics
; 21(Suppl 5): 582, 2020 Dec 16.
Artigo
em Inglês
| MEDLINE | ID: mdl-33327932
4.
Analysis of heterogeneous genomic samples using image normalization and machine learning.
BMC Genomics
; 21(Suppl 6): 405, 2020 Dec 21.
Artigo
em Inglês
| MEDLINE | ID: mdl-33349236
5.
Unlocking capacities of genomics for the COVID-19 response and future pandemics.
Nat Methods
; 19(4): 374-380, 2022 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-35396471
6.
Inference of clonal selection in cancer populations using single-cell sequencing data.
Bioinformatics
; 35(14): i398-i407, 2019 07 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-31510696
7.
Delineating Surface Epitopes of Lyme Disease Pathogen Targeted by Highly Protective Antibodies of New Zealand White Rabbits.
Infect Immun
; 87(8)2019 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-31085705
8.
New Zealand White Rabbits Effectively Clear Borrelia burgdorferi B31 despite the Bacterium's Functional vlsE Antigenic Variation System.
Infect Immun
; 87(7)2019 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-30988058
9.
Repeat-aware evaluation of scaffolding tools.
Bioinformatics
; 34(15): 2530-2537, 2018 08 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-29547882
10.
QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data.
Bioinformatics
; 34(1): 163-170, 2018 01 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-29304222
11.
Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants.
BMC Bioinformatics
; 19(Suppl 11): 360, 2018 Oct 22.
Artigo
em Inglês
| MEDLINE | ID: mdl-30343669
12.
Identification of Surface Epitopes Associated with Protection against Highly Immune-Evasive VlsE-Expressing Lyme Disease Spirochetes.
Infect Immun
; 86(8)2018 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-29866906
13.
Fast bootstrapping-based estimation of confidence intervals of expression levels and differential expression from RNA-Seq data.
Bioinformatics
; 33(20): 3302-3304, 2017 Oct 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-28605502
14.
Identification of cancer-specific motifs in mimotope profiles of serum antibody repertoire.
BMC Bioinformatics
; 18(Suppl 8): 244, 2017 Jun 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-28617221
15.
Antibody Response to Lyme Disease Spirochetes in the Context of VlsE-Mediated Immune Evasion.
Infect Immun
; 85(1)2017 Jan.
Artigo
em Inglês
| MEDLINE | ID: mdl-27799330
16.
Inference of genetic relatedness between viral quasispecies from sequencing data.
BMC Genomics
; 18(Suppl 10): 918, 2017 Dec 06.
Artigo
em Inglês
| MEDLINE | ID: mdl-29244009
17.
ScaffMatch: scaffolding algorithm based on maximum weight matching.
Bioinformatics
; 31(16): 2632-8, 2015 Aug 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-25890305
18.
Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling.
Bioinformatics
; 31(5): 682-90, 2015 Mar 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-25359889
19.
Accurate viral population assembly from ultra-deep sequencing data.
Bioinformatics
; 30(12): i329-37, 2014 Jun 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-24932001
20.
ILP-based maximum likelihood genome scaffolding.
BMC Bioinformatics
; 15 Suppl 9: S9, 2014.
Artigo
em Inglês
| MEDLINE | ID: mdl-25253180