Colonial coral resilience by decreasing size: reaction to increased detrital influx during onset of the late Palaeozoic Ice Age.

Modern coral reefs and associated biodiversity are severely threatened by increasing terrestrial runoff. Similar scenarios could be suspected for geological times, but reef coral resilience is still an enigma. In late Visean-Serpukhovian (Mississippian foraminiferal zones/MFZ 14-16) times, a major glaciation phase of the late Palaeozoic Ice Age (LPIA) associated with enhanced terrestrial weathering and runoff coincides with a biodiversity crisis and coral reef decline. In this study, the impact of enhanced terrestrial runoff is tested on size variations of colonial corals Aulina rotiformis and Lithostrotion decipiens along a gradient of contemporaneous (Serpukhovian) open marine carbonate to near-shore siliciclastic facies in South China. Along this gradient, their sizes decrease from carbonate, through intermediate carbonate-siliciclastic, to siliciclastic facies. This is consistent with increasing abundance of terrestrial materials of high silicon, aluminium and phosphorus values. On a larger million-year-long interval (MFZ14-16) and for several palaeocontinents, size data of Lithostrotion decipiens and Siphonodendron pauciradiale show a distinct decline in late Visean, when enhanced terrestrial weathering occurred commonly with palaeosols developed during regression. This suggests that terrestrial sediment and nutrient input may have mainly controlled phenotypic plasticity in Mississippian reef corals, with a decrease in size as a component of resilience across the LPIA onset.

Sponge Prokaryote Communities in Taiwanese Coral Reef and Shallow Hydrothermal Vent Ecosystems.

Previously, it was believed that the prokaryote communities of typical 'low-microbial abundance' (LMA) or 'non-symbiont harboring' sponges were merely subsets of the prokaryote plankton community. Recent research has, however, shown that these sponges are dominated by particular clades of Proteobacteria or Cyanobacteria. Here, we expand on this research and assess the composition and putative functional profiles of prokaryotic communities from LMA sponges collected in two ecosystems (coral reef and hydrothermal vent) from vicinal islands of Taiwan with distinct physicochemical conditions. Six sponge species identified as Acanthella cavernosa (Bubarida), Echinodictyum asperum, Ptilocaulis spiculifer (Axinellida), Jaspis splendens (Tetractinellida), Stylissa carteri (Scopalinida) and Suberites sp. (Suberitida) were sampled in coral reefs in the Penghu archipelago. One sponge species provisionally identified as Hymeniacidon novo spec. (Suberitida) was sampled in hydrothermal vent habitat. Each sponge was dominated by a limited set of operational taxonomic units which were similar to sequences from organisms previously obtained from other LMA sponges. There was a distinct bacterial community between sponges collected in coral reef and in hydrothermal vents. The putative functional profile revealed that the prokaryote community from sponges collected in hydrothermal vents was significantly enriched for pathways related to DNA replication and repair.

Genetic and epigenetic insight into morphospecies in a reef coral.

Incongruence between conventional and molecular systematics has left the delineation of many species unresolved. Reef-building corals are no exception, with phenotypic plasticity among the most plausible explanations for alternative morphospecies. As potential molecular signatures of phenotypic plasticity, epigenetic processes may contribute to our understanding of morphospecies. We compared genetic and epigenetic variation in Caribbean branching Porites spp., testing the hypothesis that epigenetics-specifically, differential patterns of DNA methylation-play a role in alternative morphotypes of a group whose taxonomic status has been questioned. We used reduced representation genome sequencing to analyse over 1,000 single nucleotide polymorphisms and CpG sites in 27 samples of Porites spp. exhibiting a range of morphotypes from a variety of habitats in Belize. We found stronger evidence for genetic rather than epigenetic structuring, identifying three well-defined genetic groups. One of these groups exhibited significantly thicker branches, and branch thickness was a better predictor of genetic groups than depth, habitat or symbiont type. In contrast, no clear epigenetic patterns emerged with respect to phenotypic or habitat variables. While there was a weak positive correlation between pairwise genetic and epigenetic distance, two pairs of putative clones exhibited substantial epigenetic differences, suggesting a strong environmental effect. We speculate that epigenetic patterns are a complex mosaic reflecting diverse environmental histories superimposed over a relatively small heritable component. Given the role of genetics in branching Porites spp. morphospecies we were able to detect with genomewide sequencing, use of such techniques throughout the geographic range of these corals may help settle their phylogeny.

Fecundity and the demographic strategies of coral morphologies.

Understanding species differences in demographic strategies is a fundamental goal of ecology. In scleractinian corals, colony morphology is tightly linked with many demographic traits, such as size-specific growth and morality. Here we test how well morphology predicts the colony size-fecundity relationship in eight species of broadcast-spawning corals. Variation in colony fecundity is greater among morphologies than between species with a similar morphology, demonstrating that colony morphology can be used as a quantitative proxy for demographic strategies. Additionally, we examine the relationship between size-specific colony fecundity and mechanical vulnerability (i.e., vulnerability to colony dislodgment). Interestingly, the relationship between size-specific fecundity and mechanical vulnerability varied among morphologies. For tabular species, the most fecund colonies are the most mechanically vulnerable, while the opposite is true for massive species. For corymbose and digitate colonies, mechanical vulnerability remains relatively constant as fecundity increases. These results reveal strong differences in the demographic tradeoffs among species of different morphologies. Using colony morphology as a quantitative proxy for demographic strategies can help predict coral community dynamics and responses to anthropogenic change.

Mechanical vulnerability explains size-dependent mortality of reef corals.

Understanding life history and demographic variation among species within communities is a central ecological goal. Mortality schedules are especially important in ecosystems where disturbance plays a major role in structuring communities, such as coral reefs. Here, we test whether a trait-based, mechanistic model of mechanical vulnerability in corals can explain mortality schedules. Specifically, we ask whether species that become increasingly vulnerable to hydrodynamic dislodgment as they grow have bathtub-shaped mortality curves, whereas species that remain mechanically stable have decreasing mortality rates with size, as predicted by classical life history theory for reef corals. We find that size-dependent mortality is highly consistent between species with the same growth form and that the shape of size-dependent mortality for each growth form can be explained by mechanical vulnerability. Our findings highlight the feasibility of predicting assemblage-scale mortality patterns on coral reefs with trait-based approaches.

Distribution and risk assessment of microplastics in typical ecosystems in the South China Sea.

Microplastic pollution in the marine environment has attracted worldwide attention. The South China Sea is considered a hotspot for microplastic pollution due to the developed industries and high population density around the South China Sea. The accumulation of microplastics in ecosystems can adversely affect the health of the environment and organisms. This paper reviews the recent microplastic studies conducted in the South China Sea, which novelty summarizes the abundance, types, and potential hazards of microplastics in coral reef ecosystems, mangrove ecosystems, seagrass bed ecosystems, and macroalgal ecosystems. A summary of the microplastic pollution status of four ecosystems and a risk assessment provides a more comprehensive understanding of the impact of microplastic pollution on marine ecosystems in the South China Sea. Microplastic abundances of up to 45,200 items/m3 were reported in coral reef surface waters, 5738.3 items/kg in mangrove sediments, and 927.3 items/kg in seagrass bed sediments. There are few studies of microplastics in the South China Sea macroalgae ecosystems. However, studies from other areas indicate that macroalgae can accumulate microplastics and are more likely to enter the food chain or be consumed by humans. Finally, this paper compared the current risk levels of microplastics in the coral reef, mangrove, and seagrass bed ecosystems based on available studies. Pollution load index (PLI) ranges from 3 to 31 in mangrove ecosystems, 5.7 to 11.9 in seagrass bed ecosystems, and 6.1 to 10.2 in coral reef ecosystems, respectively. The PLI index varies considerably between mangroves depending on the intensity of anthropogenic activity around the mangrove. Further studies on seagrass beds and macroalgal ecosystems are required to extend our understanding of microplastic pollution in marine environments. Recent microplastic detection in fish muscle tissue in mangroves requires more research to further the biological impact of microplastic ingestion and the potential food safety risks.

Separate and combined effects of elevated pCO2 and temperature on the branching reef corals Acropora digitifera and Montipora digitata.

Ocean acidification (OA) and warming (OW) are major global threats to coral reef ecosystems; however, studies on their combined effects (OA + OW) are scarce. Therefore, we evaluated the effects of OA, OW, and OA + OW in the branching reef corals Acropora digitifera and Montipora digitata, which have been found to respond differently to environmental changes. Our results indicate that OW has a greater impact on A. digitifera and M. digitata than OA and that the former species is more vulnerable to OW than the latter. OW was the main stressor for increased mortality and decreased calcification in the OA + OW group, and the effect of OA + OW was additive in both species. Our findings suggest that the relative abundance and cover of M. digitata are expected to increase whereas those of A. digitifera may decrease in the near future in Okinawa.

First report on per- and polyfluoroalkyl substances (PFASs) in coral communities from the Northern South China sea: Occurrence, seasonal variation, and interspecies differences.

In this study, the contamination levels and seasonal variation of 22 PFASs were investigated in coastal reef-building corals (n = 68) from the northern South China Sea (SCS) during wet and dry seasons. Perfluorohexane sulfonate (PFHxS) was the predominant PFASs in all coral samples, representing 43% of the total PFAS. Long-chain PFASs, as well as PFAS alternatives, were frequently detected above the MQL (>88%) but showed relatively low concentrations compared to short-chain PFASs in most species and seasons. Seasonal variation of PFAS concentrations were observed in branching corals, indicating that the accumulation of PFASs may be associated with coral morphological structures. Interspecies differences in PFAS levels agree well with different bioaccumulation potentials among coral species. Redundancy analysis (RDA) showed that seasonal factor and coral genus could partly influence PFAS concentrations in coral tissues. In summary, our study firstly reported the occurrence of PFASs in coral communities from the SCS and highlights the necessity for future investigations on more toxicity data for coral communities.

New gnathiid isopod crustaceans (Cymothoida) from Heron Island and Wistari Reef, southern Great Barrier Reef.

Eleven species including six new species of Gnathiidae (Crustacea, Isopoda, Cymothoida) are reported from the Heron Island and Wistari Reef, Capricorn Group, southern Great Barrier Reef: Elaphognathia queenslandica sp. nov., Gnathia acrorudus sp. nov., Gnathia capricornica sp. nov., Gnathia carinodenta sp. nov., Gnathia formosa sp. nov. and Gnathia glaucostega sp. nov. Gnathia cornuta Holdich Harrison, 1980 and Gnathia grutterae Ferreira, Smit Davies, 2010 are for the first time reported from Heron Island and new records from Heron Island are provided for Gnathia biorbis Holdich Harrison, 1980, Gnathia variobranchia Holdich Harrison, 1980, and Gnathia wistari Svavarsson Bruce, 2012.

Partitioning of Respiration in an Animal-Algal Symbiosis: Implications for Different Aerobic Capacity between Symbiodinium spp.

Cnidarian-dinoflagellate symbioses are ecologically important and the subject of much investigation. However, our understanding of critical aspects of symbiosis physiology, such as the partitioning of total respiration between the host and symbiont, remains incomplete. Specifically, we know little about how the relationship between host and symbiont respiration varies between different holobionts (host-symbiont combinations). We applied molecular and biochemical techniques to investigate aerobic respiratory capacity in naturally symbiotic Exaiptasia pallida sea anemones, alongside animals infected with either homologous ITS2-type A4 Symbiodinium or a heterologous isolate of Symbiodinium minutum (ITS2-type B1). In naturally symbiotic anemones, host, symbiont, and total holobiont mitochondrial citrate synthase (CS) enzyme activity, but not host mitochondrial copy number, were reliable predictors of holobiont respiration. There was a positive association between symbiont density and host CS specific activity (mg protein(-1)), and a negative correlation between host- and symbiont CS specific activities. Notably, partitioning of total CS activity between host and symbiont in this natural E. pallida population was significantly different to the host/symbiont biomass ratio. In re-infected anemones, we found significant between-holobiont differences in the CS specific activity of the algal symbionts. Furthermore, the relationship between the partitioning of total CS activity and the host/symbiont biomass ratio differed between holobionts. These data have broad implications for our understanding of cnidarian-algal symbiosis. Specifically, the long-held assumption of equivalency between symbiont/host biomass and respiration ratios can result in significant overestimation of symbiont respiration and potentially erroneous conclusions regarding the percentage of carbon translocated to the host. The interspecific variability in symbiont aerobic capacity provides further evidence for distinct physiological differences that should be accounted for when studying diverse host-symbiont combinations.