Challenges in upscaling laboratory studies to ecosystems in soil microbiology research.

Soil microbiology has entered into the big data era, but the challenges in bridging laboratory-, field-, and model-based studies of ecosystem functions still remain. Indeed, the limitation of factors in laboratory experiments disregards interactions of a broad range of in situ environmental drivers leading to frequent contradictions between laboratory- and field-based studies, which may consequently mislead model development and projections. Upscaling soil microbiology research from laboratory to ecosystems represents one of the grand challenges facing environmental scientists, but with great potential to inform policymakers toward climate-smart and resource-efficient ecosystems. The upscaling is not only a scale problem, but also requires disentangling functional relationships and processes on each level. We point to three potential reasons for the gaps between laboratory- and field-based studies (i.e., spatiotemporal dynamics, sampling disturbances, and plant-soil-microbial feedbacks), and three key issues of caution when bridging observations and model predictions (i.e., across-scale effect, complex-process coupling, and multi-factor regulation). Field-based studies only cover a limited range of environmental variation that must be supplemented by laboratory and mesocosm manipulative studies when revealing the underlying mechanisms. The knowledge gaps in upscaling soil microbiology from laboratory to ecosystems should motivate interdisciplinary collaboration across experimental, observational, theoretic, and modeling research.

Decadally cycling soil carbon is more sensitive to warming than faster-cycling soil carbon.

The response of soil organic carbon (SOC) pools to globally rising surface temperature crucially determines the feedback between climate change and the global carbon cycle. However, there is a lack of studies investigating the temperature sensitivity of decomposition for decadally cycling SOC which is the main component of total soil carbon stock and the most relevant to global change. We tackled this issue using two decadally (13) C-labeled soils and a much improved measuring system in a long-term incubation experiment. Results indicated that the temperature sensitivity of decomposition for decadally cycling SOC (>23 years in one soil and >55 years in the other soil) was significantly greater than that for faster-cycling SOC (<23 or 55 years) or for the entire SOC stock. Moreover, decadally cycling SOC contributed substantially (35-59%) to the total CO2 loss during the 360-day incubation. Overall, these results indicate that the decomposition of decadally cycling SOC is highly sensitive to temperature change, which will likely make this large SOC stock vulnerable to loss by global warming in the 21st century and beyond.

Potential linkage between sedimentary oxygen consumption and benthic flux of biogenic elements in a coastal scallop farming area, North Yellow Sea.

Surface sediments were collected from a mariculture area adjacent to the Yangma Island suffering from hypoxia in summer, and a laboratory static incubation was conducted to study the sedimentary oxygen consumption (SOC) and the benthic fluxes of nutrients and fluorescent dissolved organic matter (FDOM). Compared with some coastal areas, the SOC of the studied area was relatively low in summer with the value of 2.34-6.03 mmol m-2 d-1. Sediment acted as an important source of nutrients (except for nitrate) and FDOM for the overlying water. Dissolved oxygen (DO) in the overlying water could affect the decomposition mode of sedimentary organic matter (SOM), i.e. aerobic and anaerobic decomposition and subsequently dominated the release of nutrients and FDOM. When DO > 50 µmol l-1, it was beneficial to the release of ammonium, silicate and FDOM. In contrast, low oxygen conditions, i.e. DO < 100 µmol l-1, stimulated sediment phosphate efflux. In addition, scallop farming activities also affected the SOC and benthic flux of nutrients and FDOM mainly through biological deposition.

The influence of summer hypoxia on sedimentary phosphorus biogeochemistry in a coastal scallop farming area, North Yellow Sea.

In situ field investigations coupled with laboratory incubations were employed to explore the surface sedimentary phosphorus (P) cycle in a mariculture area adjacent to the Yangma Island suffering from summer hypoxia in the North Yellow Sea. Five forms of P were fractionated, namely exchangeable P (Ex-P), iron-bound P (FeP), authigenic apatite (CaP), detrital P (De-P) and organic P (OP). Total P (TP) varied from 13.42 to 23.88 µmol g-1 with the main form of inorganic P (IP). The benthic phosphate (DIP) fluxes were calculated based on incubation experiments. The results show that the sediment was an important source of P in summer with ~39% of the bioavailable P (BioP) recycled back into the water column. However, the sediment acted a sink of P in autumn. The benthic DIP fluxes were mainly controlled by the remobilizing of FeP, Ex-P and OP under contrasting redox conditions. In August (hypoxia season), ~0.92 µmol g-1 of FeP and ~0.52 µmol g-1 of OP could be transformed to DIP and released into water, while ~0.36 µmol g-1 of DIP was adsorbed to clay minerals. In November (non-hypoxia season), however, ~0.54 µmol g-1 of OP was converted into DIP, while ~0.55 µmol g-1 and ~0.28 µmol g-1 of DIP was adsorbed to clay minerals and bind to iron oxides. Furthermore, scallop farming activities also affected the P mobilization through biological deposition and reduced hydrodynamic conditions. The burial fluxes of P varied from 11.67 to 20.78 µmol cm-2 yr-1 and its burial efficiency was 84.7-100%, which was consistent with that in most of the marginal seas worldwide. This study reveals that hypoxia and scallop farming activities can significantly promote sedimentary P mobility, thereby causing high benthic DIP flux in coastal waters.

Heterogeneity of carbon loss and its temperature sensitivity in East-European subarctic tundra soils.

Arctic peatlands store large stocks of organic carbon which are vulnerable to the climate change but their fate is uncertain. There is increasing evidence that a part of it will be lost as a result of faster microbial mineralization. We studied the vulnerability of 3500-5900 years old bare peat uplifted from permafrost layers by cryogenic processes to the surface of an arctic peat plateau. We aimed to find biotic and abiotic drivers of CLOSS from old peat and compare them with those of adjacent, young vegetated soils of the peat plateau and mineral tundra. The soils were incubated in laboratory at three temperatures (4°C, 12°C and 20°C) and two oxygen levels (aerobic, anaerobic). CLOSS was monitored and soil parameters (organic carbon quality, nutrient availability, microbial activity, biomass and stoichiometry, and extracellular oxidative and hydrolytic enzyme pools) were determined. We found that CLOSS from the old peat was constrained by low microbial biomass representing only 0.22% of organic carbon. CLOSS was only slightly reduced by the absence of oxygen and exponentially increased with temperature, showing the same temperature sensitivity under both aerobic and anaerobic conditions. We conclude that carbon in the old bare peat is stabilized by a combination of physical, chemical and biological controls including soil compaction, organic carbon quality, low microbial biomass and the absence of plants.