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1.
Arch Virol ; 169(10): 213, 2024 Oct 04.
Artigo em Inglês | MEDLINE | ID: mdl-39365477

RESUMO

Pigeon paramyxovirus type 1 (PPMV-1) poses significant economic challenges to the pigeon industry in China. However, information about the prevalence, genetic diversity, and epidemiology of PPMV-1 in China is still lacking. In this study, we isolated six strains of PPMV-1 from Hubei and Zhejiang provinces in 2022. All six isolates were found to belong to subgenotype VI.2.1.1.2.2. Five of them were identified as mesogenic and one as lentogenic. Multiple mutations were observed in the F and HN proteins of these isolates. Comprehensive analysis of global PPMV-1 strains highlighted the dominance of genotype VI, showing that VI.2.1.1.2.2 has been the dominant subgenotype since 2011. We also identified 36 host-specific amino acid substitutions that are unique to PPMV-1 in comparison to chicken-origin NDVs. The data reported here contribute to our understanding of the epidemiology, genetic diversity, and prevalence of PPMV-1 and serve as a valuable reference for the prevention and control of PPMV-1.


Assuntos
Columbidae , Variação Genética , Vírus da Doença de Newcastle , Filogenia , China/epidemiologia , Animais , Columbidae/virologia , Vírus da Doença de Newcastle/genética , Vírus da Doença de Newcastle/classificação , Vírus da Doença de Newcastle/isolamento & purificação , Doença de Newcastle/virologia , Doença de Newcastle/epidemiologia , Genótipo , Proteína HN/genética , Mutação
2.
Virus Genes ; 60(5): 510-516, 2024 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-38866926

RESUMO

In order to study the integration of reticuloendotheliosis virus (REV) in pigeonpox virus (PPV), we collected suspected pigeonpox disease material, amplified the 4b core protein gene of PPV, the gp90 gene of REV, and the integrated sequence fragments from the end of the ORF201 segment of PPV to the beginning of the LTR of REV, and sequenced these genes. The results showed that a 4b core protein fragment of 332 bp was amplified and identified as pigeonpox virus, which was named SX/TY/LTR 01/2023. Sequence analysis showed that the pigeonpox virus isolate belonged to genotype A2, which was the closest to the domestic CVL strain, with a identity of 99.4%. A band of 1191 bp was amplified from the gp90 gene of REV, named SX/TY/PPV-REV01/2023, and sequence analysis indicated that REV belonged to genotype III. The sequence analysis showed that REV belonged to genotype III, and belonged to the same large branch as the domestic isolates JSRD0701 and LNR0801, with 99.3% identity. The integrated sequence fragment was amplified to a band of 637 bp, which determined that the REV sequence was integrated in the PPV rather than a mixed infection of the two viruses. This indicates that REV was integrated in this isolation of PPV, suggesting that pigeon farms need to prevent reticuloendotheliosis at the same time when preventing pigeonpox.


Assuntos
Avipoxvirus , Filogenia , Vírus da Reticuloendoteliose , Animais , Vírus da Reticuloendoteliose/genética , Vírus da Reticuloendoteliose/isolamento & purificação , Avipoxvirus/genética , Avipoxvirus/isolamento & purificação , Avipoxvirus/classificação , Columbidae/virologia , Infecções por Poxviridae/virologia , Infecções por Poxviridae/veterinária , Genótipo , Análise de Sequência de DNA , Doenças das Aves/virologia
3.
BMC Vet Res ; 20(1): 305, 2024 Jul 09.
Artigo em Inglês | MEDLINE | ID: mdl-38982473

RESUMO

BACKGROUND: Pigeon Rotavirus A (RVA) infection has been confirmed in pigeons in the last decade as a cause of Young Pigeon Disease (YPD). Although YPD has been known for many years to date, no studies have been conducted to track the spread of RVA infection in pigeons during the racing season. The presented research aims to determine the course of RVA infection during the flights of young racing pigeons in the summer season, in one of the districts in the Mazovian Voivodeship in Poland. RESULTS: Faecal samples of pigeons collected from transport baskets in vehicles transporting pigeons to the starting point were tested. The quantitative RT-PCR (qRT-PCR) was used to detect the genetic material of RVA. Samples taken during 6 flights were analysed. The study showed a percentage increase in infections up to the fourth flight of pigeons, and then their decrease. With Cq values below 20, breeders did not participate in the next flight and/or reported disease in the flock. With positive Cq values of 20 to 30, clinical signs of disease were not reported. Of the 76 breeders participating in the races, at least one positive result was found in 46 (60.5%). Including the occurrence of the disease during the racing season was reported by 11 breeders (14.4%). The main clinical signs in sick pigeons were vomiting, diarrhea and stowed crop. The tested pigeons were not vaccinated against RVA. CONCLUSIONS: During training and racing of pigeons, it is not possible to avoid exposing them to pathogens, including RVA, regardless of whether pigeons from different breeders are placed in the same baskets or are in separate baskets. However, after four flights the number of new cases of the disease decreases which indicates the development of immunity. The qRT-PCR test is useful in the diagnosis and differentiation of clinical (Cq below 20) and subclinical RVA infections in racing pigeons.


Assuntos
Doenças das Aves , Columbidae , Fezes , Infecções por Rotavirus , Rotavirus , Estações do Ano , Animais , Columbidae/virologia , Infecções por Rotavirus/veterinária , Infecções por Rotavirus/virologia , Infecções por Rotavirus/epidemiologia , Doenças das Aves/virologia , Doenças das Aves/epidemiologia , Rotavirus/isolamento & purificação , Fezes/virologia , Polônia/epidemiologia
4.
Arch Virol ; 166(1): 65-72, 2021 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-33067650

RESUMO

A total of 289 cloacal swabs from pigeons from 29 different breeders in Germany were collected. In addition, samples from pigeons exhibited at shows were collected. The detailed health status of the pigeon flocks was recorded. Samples were analysed for the presence of the recently discovered pigeon rotavirus and pigeon circovirus. Pigeon rotavirus was found in 10.3% and pigeon circoviruses was found in 65.5% of sampled pigeon lofts. The study revealed a strong relationship between the attendance of shows and the occurrence of different clinical signs. The higher prevalence of pigeon rotavirus in exhibited animals indicates that exhibitions are a risk factor for the transmission of this pathogen.


Assuntos
Doenças das Aves/virologia , Columbidae/virologia , Infecções por Rotavirus/virologia , Animais , Infecções por Circoviridae/virologia , Circovirus/patogenicidade , Alemanha , Prevalência , Fatores de Risco , Rotavirus/patogenicidade
5.
Arch Virol ; 166(5): 1469-1475, 2021 May.
Artigo em Inglês | MEDLINE | ID: mdl-33721100

RESUMO

In 2018, an outbreak resulting in deaths of 28 breeding pigeons was reported north of Brisbane, Australia. The affected birds had runny nasal discharge and poor body condition. Two birds were submitted to Biosecurity Sciences Laboratory, Brisbane, for investigation. A range of diagnostic tests excluded a number of known pathogens, and no virus was isolated in cell culture. Histopathological examination revealed severe acute multifocal necrosis in the liver with eosinophilic intranuclear inclusions in hepatocytes and Kupffer cells. High-throughput sequencing (HTS) revealed full-length sequences for pigeon adenovirus 1 (PiAd-A) and pigeon torque teno virus (PTTV). This report indicates concomitant PiAd-1and PTTV infections in Australian pigeons.


Assuntos
Adenoviridae/isolamento & purificação , Doenças das Aves/virologia , Coinfecção/veterinária , Columbidae/virologia , Infecções por Vírus de DNA/veterinária , Torque teno virus/isolamento & purificação , Animais , Animais Domésticos , Doenças das Aves/epidemiologia , Doenças das Aves/patologia , Coinfecção/epidemiologia , Coinfecção/patologia , Coinfecção/virologia , Infecções por Vírus de DNA/epidemiologia , Infecções por Vírus de DNA/patologia , Infecções por Vírus de DNA/virologia , DNA Viral/genética , Genoma Viral/genética , Fígado/virologia , Necrose , Filogenia , Queensland/epidemiologia
6.
Avian Pathol ; 50(1): 98-106, 2021 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-33034513

RESUMO

Avian influenza (AI) is one of the most important viral diseases in poultry, wildlife and humans. Available data indicate that pigeons play a minimum role in the epidemiology of AI. However, a degree of variation exists in the susceptibility of pigeons to highly pathogenic AI viruses (HPAIVs), especially since the emergence of the goose/Guangdong H5 lineage. Here, the pathogenesis of H5N8 HPAIV in comparison with a H7N1 HPAIV and the role of pigeons in the epidemiology of these viruses were evaluated. Local and urban pigeons (Columba livia var. domestica) were intranasally inoculated with 105 ELD50 of A/goose/Spain/IA17CR02699/2017 (H5N8) or A/Chicken/Italy/5093/1999 (H7N1) and monitored during 14 days. Several pigeons inoculated with H5N8 or H7N1 seroconverted. However, clinical signs, mortality, microscopic lesions and viral antigen were only detected in a local pigeon inoculated with H5N8 HPAIV. This pigeon presented prostration and neurological signs that correlated with the presence of large areas of necrosis and widespread AIV antigen in the central nervous system, indicating that the fatal outcome was associated with neurological dysfunction. Viral RNA in swabs was detected in some pigeons inoculated with H7N1 and H5N8, but it was inconsistent, short-term and at low titres. The present study demonstrates that the majority of pigeons were resistant to H5N8 and H7N1 HPAIVs, despite several pigeons developing asymptomatic infections. The limited viral shedding indicates a minimum role of pigeons as amplifiers of HPAIVs, regardless of the viral lineage, and suggests that this species may represent a low risk for environmental contamination. RESEARCH HIGHLIGHTS H7N1 and H5N8 HPAIVs can produce subclinical infections in pigeons. The mortality caused by H5N8 HPAIV in one pigeon was associated with neurological dysfunction. Pigeons represent a low risk for environmental contamination by HPAIVs.


Assuntos
Columbidae/virologia , Vírus da Influenza A Subtipo H5N8/patogenicidade , Vírus da Influenza A Subtipo H7N1/patogenicidade , Influenza Aviária/virologia , Animais , Animais Selvagens , Vírus da Influenza A Subtipo H5N8/genética , Vírus da Influenza A Subtipo H5N8/imunologia , Vírus da Influenza A Subtipo H7N1/genética , RNA Viral/genética , Virulência , Eliminação de Partículas Virais
7.
J Appl Microbiol ; 130(5): 1695-1704, 2021 May.
Artigo em Inglês | MEDLINE | ID: mdl-33048404

RESUMO

AIMS: In this study, we aimed to isolate and evaluate the efficacy of Bacillus velezensis as a probiotic and to assess its activity towards pigeons infected with pigeon circovirus (PiCV). METHODS AND RESULTS: Bacillus velezensis, isolated from pigeon faeces, was orally administered to pigeons for 60 days. After pigeons were challenged with PiCV, the PiCV viral load and expression of indicator genes for innate immunity were detected in spleen tissue and faeces of pigeons. Bacillus velezensis significantly reduced the PiCV viral load in the faeces and spleen of pigeons 5 days post-challenge (dpc). The mRNA expression levels of treated pigeons showed that interferon-gamma (IFN-γ), myxovirus resistance 1 (Mx1), and signal transducers and activators of transcription 1 (STAT1) genes were upregulated, whereas no expression of interleukin-4 (IL-4) was detected. Moreover, toll-like receptor 2 (TLR2) and 4 (TLR4) were significantly upregulated in probiotic-treated pigeons (P < 0·05). CONCLUSIONS: This is the first report showing that probiotic supplementation can effectively enhance the T-helper type 1 immune response and decrease the PiCV viral loads in pigeons. SIGNIFICANCE AND IMPACT OF THE STUDY: This study proposes that the administration of a probiotic strain, B. velezensis, to pigeons can protect against PiCV infection.


Assuntos
Bacillus , Infecções por Circoviridae/imunologia , Circovirus/imunologia , Columbidae/imunologia , Imunidade Inata/genética , Probióticos/farmacologia , Animais , Antivirais/farmacologia , Doenças das Aves/imunologia , Doenças das Aves/virologia , Infecções por Circoviridae/veterinária , Circovirus/efeitos dos fármacos , Columbidae/genética , Columbidae/virologia , Citocinas/genética , Citocinas/metabolismo , DNA Viral , Suplementos Nutricionais/microbiologia , Fezes/microbiologia , Regulação da Expressão Gênica , Interferon gama , Baço , Carga Viral
8.
J Gen Virol ; 101(2): 156-167, 2020 02.
Artigo em Inglês | MEDLINE | ID: mdl-31922948

RESUMO

Several pigeon paramyxovirus-1 (PPMV-1) outbreaks in feral pigeons were described recently in Switzerland. The potential of PPMV-1 to induce the notifiable Newcastle disease in chickens is discussed controversially. Therefore, in order to study epidemiologically relevant parameters such as the kinetics of PPMV-1 replication and shedding as well as seroconversion after infection, chickens were infected experimentally with a Swiss PPMV-1 isolate. This generated also defined sample material for the comparison of diagnostic tests. The infectivity of the Swiss PPMV-1 isolate for chickens was demonstrated successfully by virus shedding after experimental inoculation. Our data suggest that long-lasting shedding for up to 60 days can occur in chickens infected with PPMV-1. The isolate used here was of low pathogenicity for chickens. Different quantitative reverse transcription PCR assays were evaluated with a set of Swiss PPMV-1 isolates, and various samples from experimentally infected chickens were analysed with respect to their suitability for viral RNA detection. At 14 days post-infection, virus genome was detected mainly in spleen, caecal tonsils, heart, cloacal swabs, liver, proventriculus, duodenum and kidney tissue samples. Overall, the level of virus replication was low. Not all assays used routinely in diagnostics were capable of detecting viral genome from the isolates tested. Possible explanations are the genetic divergence of PPMV-1 and the low level of viral RNA in the samples. In contrast, two methods that are not used routinely proved more suitable for virus-genome detection. Importantly, the collection of material from various different organs is recommended, in addition to the kidney and brain analysed routinely. In conclusion, this study shows that there is a need to reconsider the type of samples and the protocols used for the detection of PPMV-1 RNA in chickens.


Assuntos
Infecções por Avulavirus/diagnóstico , Avulavirus , Doença de Newcastle/diagnóstico , Animais , Avulavirus/genética , Avulavirus/crescimento & desenvolvimento , Avulavirus/isolamento & purificação , Avulavirus/patogenicidade , Infecções por Avulavirus/patologia , Galinhas , Columbidae/virologia , Genoma Viral , Doença de Newcastle/patologia , Doença de Newcastle/virologia , Vírus da Doença de Newcastle/genética , Vírus da Doença de Newcastle/crescimento & desenvolvimento , Vírus da Doença de Newcastle/isolamento & purificação , Vírus da Doença de Newcastle/patogenicidade , Doenças das Aves Domésticas/virologia , Suíça , Viroses/veterinária , Replicação Viral , Eliminação de Partículas Virais
9.
Microb Pathog ; 139: 103905, 2020 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-31790792

RESUMO

Pigeon circovirus (PiCV) is able to infect racing and meat pigeons of all ages and is a key factor that triggers young pigeon disease syndrome (YPDS). PiCV vaccine research has been impeded because PiCV cannot be grown or propagated in cell cultures. Virus-like particles (VLPs), which can be generated by a wide range of expression systems, have been shown to have outstanding immunogenicity and constitute promising vaccines against a wide range of pathogens. Cap protein, which contains neutralizing antibody epitopes, is the only capsid protein of PiCV. In this study, the baculovirus expression system was utilized to express the PiCV Cap protein, which was self-assembled into VLPs with a spherical morphology and diameters of 15-18 nm. Specific antibodies against the Cap protein were induced after BALB/c mice immunized intramuscularly (i.m.) with VLPs combined with adjuvant. Based on these findings, PiCV VLPs may be a promising candidate vaccine against PiCV.


Assuntos
Doenças das Aves/virologia , Infecções por Circoviridae/veterinária , Circovirus/fisiologia , Columbidae/virologia , Animais , Anticorpos Antivirais/imunologia , Baculoviridae/genética , Baculoviridae/metabolismo , Doenças das Aves/imunologia , Doenças das Aves/prevenção & controle , Proteínas do Capsídeo/administração & dosagem , Proteínas do Capsídeo/genética , Proteínas do Capsídeo/imunologia , Infecções por Circoviridae/imunologia , Infecções por Circoviridae/prevenção & controle , Infecções por Circoviridae/virologia , Circovirus/genética , Circovirus/imunologia , Columbidae/imunologia , Feminino , Expressão Gênica , Imunização , Camundongos , Camundongos Endogâmicos BALB C , Vacinas Virais/administração & dosagem , Vacinas Virais/genética , Vacinas Virais/imunologia
10.
Virus Genes ; 55(4): 479-489, 2019 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-30976951

RESUMO

Virulent Newcastle disease viruses (NDV) have been present in Mexico since 1946, and recently, multiple outbreaks have been reported in the country. Here, we characterized eleven NDV isolated from apparently healthy wild birds and backyard chickens in three different locations of Jalisco, Mexico in 2017. Total RNA from NDV was reverse-transcribed, and 1285 nucleotides, which includes 3/4 of the fusion gene, was amplified and sequenced using a long-read MinION sequencing method. The sequences were 99.99-100% identical to the corresponding region obtained using the Illumina MiSeq. Phylogenetic analysis using MinION sequences demonstrated that nine virulent NDV from wild birds belonged to sub-genotypes Vc and VIn, and two backyard chicken isolates were of sub-genotype Vc. The sub-genotype Vc viruses had nucleotide sequence identity that ranged from 97.7 to 98% to a virus of the same sub-genotype isolated from a chicken in Mexico in 2010. Three viruses from pigeons had 96.3-98.7% nucleotide identity to sub-genotype VIn pigeon viruses, commonly referred to as pigeon paramyxovirus, isolated in the USA during 2000-2016. This study demonstrates that viruses of sub-genotype Vc are still present in Mexico, and the detection of this sub-genotype in both chickens and wild birds suggests that transmission among these species may represent a biosecurity risk. This is the first detection and complete genome sequencing of genotype VI NDV from Mexico. In addition, the utilization of an optimized long-read sequencing method for rapid virulence and genotype identification using the Oxford nanopore MinION system is demonstrated.


Assuntos
Aves/virologia , Galinhas/virologia , Vírus da Doença de Newcastle/isolamento & purificação , Animais , Animais Selvagens/virologia , Columbidae/virologia , Genoma Viral , Genótipo , México , Vírus da Doença de Newcastle/classificação , Vírus da Doença de Newcastle/genética , Filogenia , Sequenciamento Completo do Genoma
11.
Avian Pathol ; 48(6): 610-621, 2019 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-31403322

RESUMO

Newcastle disease (ND), caused by virulent Avian avulavirus 1 (AAvV 1), affects a wide range of avian species worldwide. Recently, several AAvVs of diverse genotypes have emerged with varying genomic and residue substitutions, and subsequent clinical impact on susceptible avian species. We assessed the clinico-pathological influence of two different AAvV 1 pathotypes [wild bird originated-velogenic strain (sub-genotype VIIi, MF437287) and feral pigeon originated-mesogenic strain (sub-genotype VIm, KU885949)] in commercial broiler chickens and pigeons. The velogenic strain caused 100% mortality in both avian species while the mesogenic strain caused 0% and 30% mortality in chickens and pigeons, respectively. Both strains showed tissue tropism for multiple tissues including visceral organs; however, minor variances were observed according to host and pathotype. The observed gross and microscopic lesions were typical of AAvV 1 infection. Utilizing oropharyngeal and cloacal swabs, a comparable pattern of viral shedding was observed for both strains from each of the infected individuals of both avian species. The study concludes a varying susceptibility of chickens and pigeons to different wild bird-originated AAvV 1 pathotypes and, therefore, suggests continuous monitoring and surveillance of currently prevailing strains for effective control of the disease worldwide, particularly in disease-endemic countries.


Assuntos
Infecções por Avulavirus/veterinária , Avulavirus/genética , Doenças das Aves/patologia , Galinhas/virologia , Columbidae/virologia , Doença de Newcastle/patologia , Doenças das Aves Domésticas/patologia , Animais , Avulavirus/isolamento & purificação , Infecções por Avulavirus/patologia , Infecções por Avulavirus/virologia , Doenças das Aves/virologia , Genômica , Genótipo , Doença de Newcastle/virologia , Doenças das Aves Domésticas/virologia , Taxa de Sobrevida
12.
Avian Pathol ; 48(6): 512-520, 2019 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-31199167

RESUMO

Like other avian circovirus species, Pigeon circovirus (PiCV) is known to be genetically diverse with a relatively small circular single-stranded DNA genome of 2 kb that encodes for a capsid protein (Cap) and a replication initiator protein (Rep). Recent paleoviral evidence hints towards a probable Gondwanan origin of avian circoviruses, paralleling the evolution and dispersal of their hosts. Limited availability of PiCV genome sequence data in Australia has hindered phylogeographic studies in this species, so we screened clinically normal rock doves (Columba livia) in regional New South Wales, and demonstrated a high prevalence (76%) of PiCV infection by PCR. We also recovered 12 complete novel PiCV genomes and phylogenetic analyses revealed that PiCV circulating in Australian feral pigeons formed two strongly supported monophyletic clades. One clade resided with PiCV genomes from Poland, Australia, United Kingdom, Belgium, China, and Japan, and another basal clade was more closely related to PiCV genomes from Poland. A novel more distantly-related PiCV rep gene formed a solitary clade with weak posterior support. So we further analysed all selected partial rep gene sequences to demonstrate a likely naturally occurring spillover infection from a passerine circovirus candidate. The findings suggest that there is a high degree of genetic variation within PiCV in Columbiformes with potential greater admixture between avian circoviruses within Australia than previously known. RESEARCH HIGHLIGHTS Confirmed high prevalence rate of PiCV circulating in Australian wild pigeons. Highlighted extensive recombination events within Australian PiCV. Demonstrated a likely naturally occurring spillover infection from a passerine circovirus candidate.


Assuntos
Doenças das Aves/epidemiologia , Infecções por Circoviridae/veterinária , Circovirus/genética , Columbidae/virologia , Genoma Viral/genética , Recombinação Genética , Animais , Doenças das Aves/virologia , Proteínas do Capsídeo/genética , Infecções por Circoviridae/epidemiologia , Infecções por Circoviridae/virologia , New South Wales/epidemiologia , Filogenia , Reação em Cadeia da Polimerase/veterinária
13.
J Infect Dis ; 218(7): 1037-1044, 2018 08 24.
Artigo em Inglês | MEDLINE | ID: mdl-29373675

RESUMO

The characteristics and risk factors of pigeon paramyxovirus type 1 (PPMV-1) infection in humans are poorly known. We performed virological, pathological, and epidemiological analyses of a Dutch case, and compared the results with those of a US case. Both infections occurred in transplant patients under immunosuppressive therapy and caused fatal respiratory failure. Both virus isolates clustered with PPMV-1, which has pigeons and doves as reservoir. Experimentally inoculated pigeons became infected and transmitted the virus to naive pigeons. Both patients were likely infected by contact with infected pigeons or doves. Given the large populations of feral pigeons with PPMV-1 infection in cities, increasing urbanization, and a higher proportion of immunocompromised individuals, the risk of severe human PPMV-1 infections may increase. We recommend testing for avian paramyxovirus type 1, including PPMV-1, in respiratory disease cases where common respiratory pathogens cannot be identified.


Assuntos
Doenças das Aves/virologia , Galinhas/virologia , Columbidae/virologia , Doença de Newcastle/diagnóstico , Vírus da Doença de Newcastle/isolamento & purificação , Pneumonia/diagnóstico , Síndrome do Desconforto Respiratório/diagnóstico , Animais , Evolução Fatal , Feminino , Humanos , Hospedeiro Imunocomprometido , Metagenômica , Pessoa de Meia-Idade , Doença de Newcastle/patologia , Doença de Newcastle/virologia , Vírus da Doença de Newcastle/patogenicidade , Filogenia , Pneumonia/patologia , Pneumonia/virologia , Síndrome do Desconforto Respiratório/patologia , Síndrome do Desconforto Respiratório/virologia , Fatores de Risco , Virulência , Zoonoses
14.
Virol J ; 15(1): 9, 2018 01 12.
Artigo em Inglês | MEDLINE | ID: mdl-29329546

RESUMO

BACKGROUND: Newcastle disease viruses (NDV) are highly contagious and cause disease in both wild birds and poultry. A pigeon-adapted variant of genotype VI NDV, often termed pigeon paramyxovirus 1, is commonly isolated from columbids in the United States and worldwide. Complete genomic characterization of these genotype VI viruses circulating in wild columbids in the United States is limited, and due to the genetic variability of the virus, failure of rapid diagnostic detection has been reported. Therefore, in this study, formalin-fixed paraffin-embedded (FFPE) samples were subjected to next-generation sequencing (NGS) to identify and characterize these circulating viruses, providing valuable genetic information. NGS enables multiple samples to be deep-sequenced in parallel. When used on FFPE samples, this methodology allows for retrospective studies of infectious organisms. METHODS: FFPE wild pigeon tissue samples (kidney, liver and spleen) from 10 mortality events in the U.S. between 2010 and 2016 were analyzed using NGS to detect and sequence NDV genomes from randomly amplified total RNA. Results were compared to the previously published immunohistochemistry (IHC) results conducted on the same samples. Additionally, phylogenetic analyses were conducted on the complete and partial fusion gene and complete genome coding sequences. RESULTS: Twenty-three out of 29 IHC-positive FFPE pigeon samples were identified as positive for NDV by NGS. Positive samples produced an average genome coverage of 99.6% and an average median depth of 199. A previously described sub-genotype (VIa) and a novel sub-genotype (VIn) of NDV were identified as the causative agent of 10 pigeon mortality events in the U.S. from 2010 to 2016. The distribution of these viruses from the North American lineages match the distribution of the Eurasian collared-doves and rock pigeons in the U.S. CONCLUSIONS: This work reports the first successful evolutionary study using deep sequencing of complete NDV genomes from FFPE samples of wild bird origin. There are at least two distinct U.S. lineages of genotype VI NDV maintained in wild pigeons that are continuously evolving independently from each other and have no evident epidemiological connections to viruses circulating abroad. These findings support the hypothesis that columbids are serving as reservoirs of virulent NDV in the U.S.


Assuntos
Columbidae/virologia , Evolução Molecular , Variação Genética , Genoma Viral , Genótipo , Doença de Newcastle/epidemiologia , Doença de Newcastle/virologia , Vírus da Doença de Newcastle/genética , Animais , Vírus da Doença de Newcastle/classificação , Filogenia , Vigilância em Saúde Pública , Estados Unidos/epidemiologia , Sequenciamento Completo do Genoma
15.
Mol Cell Probes ; 39: 53-56, 2018 06.
Artigo em Inglês | MEDLINE | ID: mdl-29625161

RESUMO

Pigeon torque teno virus (PTTV), a recently discovered circular DNA virus. Here, we developed a TaqMan-based real-time PCR for rapid and specific detection of PTTV infections with sensitivity up to 49.3 copies/µl. Positive signals can be observed by the assay in pigeon embryonated eggs, which indicted that PTTV can be transmitted vertically. Our findings play important implications for a better understanding the transmission of torque teno virus in pigeons.


Assuntos
Columbidae/virologia , Reação em Cadeia da Polimerase em Tempo Real/métodos , Torque teno virus/isolamento & purificação , Animais , Padrões de Referência , Reprodutibilidade dos Testes , Sensibilidade e Especificidade
16.
Arch Virol ; 163(11): 2971-2984, 2018 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-30043204

RESUMO

Pigeon paramyxovirus type 1 (PPMV-1) infection is enzootic in pigeon flocks and poses a potential risk to the poultry industry in China. To gain insight into the biological characteristics and transmission routes of circulating PPMV-1 in pigeons, 13 PPMV-1 isolates from domestic pigeons isolated during 2011-2015 in Guangxi province, China, were characterized using a pathogenicity assessment and phylogenetic analysis. All PPMV-1 isolates were mesogenic or lentogenic strains and had a mean death time (MDT) in 9-day-old SPF chicken embryos and a intracerebral pathogenicity index (ICPI) values of 54-154 h and 0.00-0.90, respectively. Analysis of the F and HN gene sequences of the PPMV-1 isolates and the Newcastle Disease (ND) vaccine strain La Sota, revealed that the nucleotide sequence similarity of the F and HN genes were all < 85% between the PPMV-1 isolates and La Sota, significantly lower than those > 98% among the PPMV-1 isolates. The amino acids sequence of the F protein at the cleavage site of the 13 PPMV-1 isolates was 112RRQKR↓F117, characteristic of virulent Newcastle disease virus (NDV). All 13 isolates were classified as sublineage 4b by phylogenetic analysis and evolutionary distances, based on the F gene sequences. It was also found that the 13 isolates were divided into two novel sub-groups of sublineage 4b, sub-sublineages 4biig and 4biih. Since these two novel sub-sublineages had two different geographic sources, we speculated that they represent two different transmission routes of PPMV-1 in China. Phylogenetic analysis of these isolates will help to elucidate the sources of the transmission and evolution of PPMV-1 and may help to control PPMV-1 infection in the pigeon industry in China.


Assuntos
Infecções por Avulavirus/veterinária , Avulavirus/genética , Avulavirus/isolamento & purificação , Doenças das Aves/virologia , Columbidae/virologia , Animais , Avulavirus/classificação , Avulavirus/fisiologia , Infecções por Avulavirus/virologia , China , Genoma Viral , Genótipo , Filogenia
17.
Arch Virol ; 163(11): 3083-3090, 2018 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-30105520

RESUMO

Pigeon circovirus (PiCV) is taxonomically classified as a member of the Circovirus genus, family Circoviridae. The virus contains a single stranded DNA genome of approximately 2 kb, with minor length variations among different isolates. The occurrence of PiCV infections in pigeons (Columba livia) has been documented worldwide over the past 20 years; however, in Brazil there were still no reports on PiCV detection. This study identifies seven PiCV genomes recovered from domestic pigeons of South Brazil through high-throughput sequencing and shows a high frequency of PiCV infection, through quantitative real-time PCR. Phylogenetic classification was performed by maximum likelihood analysis of the full genomes, ORF V1 (Rep) and ORF C1 (Cap). The results show that either full genome or Cap based analysis allowed PiCV classification into five major clades (groups A to E), where Brazilian sequences were classified as A, C or D. Recombination analyses were carried out with Simplot and RDP4 and the results show that both Rep and Cap ORFs contain several recombination hotspots, pointing to an important role for such events in PiCV evolution.


Assuntos
Doenças das Aves/virologia , Infecções por Circoviridae/veterinária , Circovirus/isolamento & purificação , Columbidae/virologia , Evolução Molecular , Animais , Brasil , Infecções por Circoviridae/virologia , Circovirus/classificação , Circovirus/genética , Sequenciamento de Nucleotídeos em Larga Escala , Fases de Leitura Aberta , Filogenia
18.
BMC Infect Dis ; 18(1): 642, 2018 Dec 12.
Artigo em Inglês | MEDLINE | ID: mdl-30541472

RESUMO

BACKGROUND: A mosquito-based arbovirus surveillance system was set up at Barkedji, Senegal after the first outbreak of Rift valley fever in West Africa in 1988. This system was recently updated using more sampling methods and collecting in greater number of ponds and villages sites. METHODS: For the current study, mosquitoes were sampled biweekly between July and December 2012 and 2013 using CDC+CO2 light traps set at ground and canopy level, mosquito nets baited with goat, sheep, human or chicken, light traps baited with goat, sheep and chicken; bird-baited traps using pigeons or chickens placed either at the ground or canopy level. Collected mosquitoes were identified, pooled and screened for arboviruses. RESULTS: A total of 42,969 mosquitoes in 4,429 pools were processed for virus isolation. Ten virus species were identified among 103 virus isolates. West Nile virus (WNV; 31 isolates), Barkedji virus (BARV; 18), Sindbis virus (SINV; 13), Usutu virus (USUV; 12), Acado virus (ACAV; 8), Ndumu virus (NDUV; 9), Sanar virus (SANV; 7), Bagaza virus (BAGV; 3), Rift valley fever virus (RVFV; 1), and Yaounde virus (YAOV; 1) were isolated from 9 ponds (91 strains) and 7 villages (12 strains). Only 3 virus species (WNV, NDU and SINV) were isolated from villages. The largest numbers of isolates were collected in October (29.1% of total isolates) and November (50.5%). Viruses were isolated from 14 mosquito species including Cx. neavei (69.9% of the strains), Cx. antennatus (9.7%), and Ma. uniformis (4.8%). NDUV, ACAV, and SINV are herein reported for the first time in the Barkedji area. Isolation of ACAV and SANV from a pool of male Ma. uniformis and USUV and BARV from a pool of male Cx. neavei, are reported for the first time to our knowledge. CONCLUSION: Our data indicate that the Barkedji area is characterized by a high diversity of viruses of medical, veterinary and unknown importance. Arboviruses were first detected in July at the beginning of the rainy season and peaked in abundance in October and November. The Barkedji area, an enzootic focus of several potentially emerging arboviruses, should be surveilled annually to be prepared to deal with future disease emergence events.


Assuntos
Infecções por Arbovirus/epidemiologia , Infecções por Arbovirus/veterinária , Infecções por Arbovirus/virologia , Arbovírus/isolamento & purificação , Culicidae/virologia , Vigilância da População/métodos , África Ocidental/epidemiologia , Animais , Galinhas/virologia , Columbidae/virologia , Culicidae/classificação , Surtos de Doenças/prevenção & controle , Cabras/virologia , Humanos , Masculino , Vírus da Febre do Vale do Rift/isolamento & purificação , Estações do Ano , Senegal/epidemiologia , Ovinos/virologia , Vírus do Nilo Ocidental/isolamento & purificação
19.
Avian Pathol ; 47(3): 286-293, 2018 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-29517348

RESUMO

The detection of avian coronaviruses (AvCoV) in wild birds and the emergence of new AvCoV have increased in the past few years. In the present study, the pathogenicity of three AvCoV isolates was investigated in day-old chicks. One AvCoV isolated from a pigeon, which clustered with the Massachusetts vaccine serotype, and two AvCoV isolated from chickens, which grouped with a Brazilian genotype lineage, were used. Clinical signs, gross lesions, histopathological changes, ciliary activity, viral RNA detection, and serology were evaluated during 42 days post infection. All AvCoV isolates induced clinical signs, gross lesions in the trachea, moderate histopathological changes in the respiratory tract, and mild changes in other tissues. AvCoV isolated from the pigeon sample caused complete tracheal ciliostasis over a longer time span. Specific viral RNA was detected in all tissues, but the highest RNA loads were detected in the digestive tract (cloacal swabs and ileum). The highest antibody levels were also detected in the group infected with an isolate from the pigeon. These results confirm the pathogenicity of Brazilian variants, which can cause disease and induce gross lesions and histopathological changes in chickens. Our results suggest that non-Galliformes birds can also play a role in the ecology of AvCoV.


Assuntos
Anticorpos Antivirais/sangue , Galinhas/virologia , Columbidae/virologia , Infecções por Coronavirus/veterinária , Gammacoronavirus/patogenicidade , Doenças das Aves Domésticas/virologia , Doenças da Traqueia/veterinária , Animais , Infecções por Coronavirus/virologia , Gammacoronavirus/genética , Gammacoronavirus/imunologia , Gammacoronavirus/isolamento & purificação , Genótipo , Vírus da Bronquite Infecciosa/genética , Vírus da Bronquite Infecciosa/imunologia , Vírus da Bronquite Infecciosa/isolamento & purificação , Vírus da Bronquite Infecciosa/patogenicidade , Traqueia/virologia , Doenças da Traqueia/virologia
20.
BMC Vet Res ; 14(1): 148, 2018 May 02.
Artigo em Inglês | MEDLINE | ID: mdl-29716604

RESUMO

BACKGROUND: The aim of the study was to evaluate the impact of herbal extracts on selected immunity mechanisms in clinically healthy pigeons and pigeons inoculated with the pigeon paramyxovirus type 1 (PPMV-1). For the first 7 days post-inoculation (dpi), an aqueous solution of Aloe vera or licorice extract was administered daily at 300 or 500 mg/kg body weight (BW). The birds were euthanized at 4, 7 and 14 dpi, and spleen samples were collected during necropsy. Mononuclear cells were isolated from spleen samples and divided into two parts: one part was used to determine the percentage of IgM+ B cells in a flow cytometric analysis, and the other was used to evaluate the expression of genes encoding IFN-γ and surface receptors on CD3+, CD4+ and CD8+ T cells. RESULTS: The expression of the IFN-γ gene increased in all birds inoculated with PPMV-1 and receiving both herbal extracts. The expression of the CD3 gene was lowest at 14 dpi in healthy birds and at 7 dpi in inoculated pigeons. The expression of the CD4 gene was higher in uninoculated pigeons receiving both herbal extracts than in the control group throughout nearly the entire experiment with a peak at 7 dpi. A reverse trend was observed in pigeons inoculated with PPMV-1 and receiving both herbal extracts. In uninoculated birds, increased expression of the CD8 gene was noted in the pigeons receiving a lower dose of the Aloe vera extract and both doses of licorice extracts. No significant differences in the expression of this gene were found between inoculated pigeons receiving both herbal extracts. The percentage of IgM+ B cells did not differ between any of the evaluated groups. CONCLUSIONS: This results indicate that Aloe vera and licorice extracts have immunomodulatory properties and can be used successfully to prevent viral diseases, enhance immunity and as supplementary treatment for viral diseases in pigeons.


Assuntos
Aloe/química , Doenças das Aves/virologia , Glycyrrhiza/química , Infecções por Paramyxoviridae/veterinária , Paramyxoviridae/efeitos dos fármacos , Extratos Vegetais/uso terapêutico , Animais , Doenças das Aves/tratamento farmacológico , Doenças das Aves/imunologia , Columbidae/imunologia , Columbidae/virologia , Citometria de Fluxo/veterinária , Imunidade Celular/efeitos dos fármacos , Imunidade Humoral/efeitos dos fármacos , Interferon gama/metabolismo , Infecções por Paramyxoviridae/tratamento farmacológico , Infecções por Paramyxoviridae/imunologia , Baço/citologia , Baço/efeitos dos fármacos , Subpopulações de Linfócitos T/efeitos dos fármacos , Subpopulações de Linfócitos T/imunologia
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