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1.
Antonie Van Leeuwenhoek ; 113(10): 1447-1454, 2020 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-32748076

RESUMO

A Gram-negative, facultatively anaerobic, motile bacterial strain, TPQG1-4T, was isolated from the leaf of Cyclobalanopsis patelliformis with spot disease. The isolate was investigated using the polyphasic taxonomic approach. 16S rRNA gene sequencing and analyzing revealed that the novel strain shares the highest sequence similarity with Stenotrophomonas lactitubi M15T (99.6%), Stenotrophomonas indicatrix WS40T (99.4%), Stenotrophomonas maltophilia IAM 12423T (99.2%) and Stenotrophomonas pavanii LMG 25348T (99.0%). In phylogenetic trees based on 16S rRNA gene sequences, the novel strain branched independently from other species of Stenotrophomonas. Average nucleotide identity values between the novel isolate and S. lactitubi M15T, S. indicatrix WS40T, S. maltophilia IAM 12423T, S. pavanii LMG 25348T, and Pseudomonas geniculata ATCC 19374T were 87.2%, 87.3%, 86.3%, 88.0%, and 81.3%, respectively, suggesting the isolate was a novel species of the genus Stenotrophomonas. The DNA G + C content of TPQG1-4T is 67.1 mol%. The major fatty acids were iso-C15:0 (25.4%) and anteiso-C15:0 (17.0%). The polar lipids of TPQG1-4T included phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, amino phospholipid and phospholipid. Based on phenotypic and genotypic characteristics, the strain represents a novel species in the genus Stenotrophomonas, for which the name Stenotrophomonas cyclobalanopsidis sp. nov. is proposed. The type strain is TPQG1-4T (= CFCC 15341T = LMG 31208T).


Assuntos
Doenças das Plantas/microbiologia , Quercus/microbiologia , Stenotrophomonas/classificação , Stenotrophomonas/isolamento & purificação , Genoma Bacteriano , Genômica/métodos , Sequenciamento de Nucleotídeos em Larga Escala , Fenótipo , Filogenia , RNA Ribossômico 16S/genética , Stenotrophomonas/química , Stenotrophomonas/genética
2.
Int J Syst Evol Microbiol ; 68(6): 1830-1838, 2018 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-29638210

RESUMO

Five Gram-stain-negative, rod-shaped, none-spore-forming isolates were obtained from biofilms on different sites of a milking machine in Germany. Another strain with similar morphological characteristics was isolated from dirty dishes. Based on phylogenetic analysis of the 16S rRNA and gyrB genes, all isolates were assigned to the genus Stenotrophomonas, but were divided into three different groups. Chemotaxonomic characterization of the isolates led to the detection of iso-C15 : 0 and anteiso-C15 : 0 as the predominant cellular fatty acids, as well as small amounts of the hydroxyl fatty acids iso-C11 : 0 3-OH, C12 : 0 3-OH and iso-C13 : 0 3-OH. One group could be assigned to the species Stenotrophomonas maltophilia, while the genome sequences of two groups displayed average nucleotide identity values of less than 94 % between each other and the genome sequences of the next related type strains Stenotrophomonas maltophilia ATCC 13637T and Stenotrophomonas rhizophila DSM 14405T. Further phylogenetic, phenotypic and chemotaxonomic analyses enabled the differentiation of these strains from these closely related species. They are therefore considered to represent two novel species, for which the names Stenotrophomonaslactitubi and Stenotrophomonasindicatrix are proposed, with strains M15T (=DSM 104152T=LMG29943T) and WS40T (=DSM28278T=LMG29942T) as type strains.


Assuntos
Microbiologia de Alimentos , Filogenia , Stenotrophomonas/classificação , Técnicas de Tipagem Bacteriana , Composição de Bases , DNA Bacteriano/genética , Indústria de Laticínios/instrumentação , Ácidos Graxos/química , Genes Bacterianos , Alemanha , Hibridização de Ácido Nucleico , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Stenotrophomonas/genética , Stenotrophomonas/isolamento & purificação
3.
Int J Syst Evol Microbiol ; 67(6): 1894-1900, 2017 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-28629502

RESUMO

A polyphasic taxonomic approach including analysis of phenotypic, physiological and genotypic characteristics, 16S rRNA gene sequence and DNA-DNA hybridization analysis was used to determine the most consistent affiliation of Pseudomonas pictorum. Pseudomonas pictorum ATCC 23328T exhibited phenotypic traits of members of the genus Stenotrophomonas including cellular fatty acid composition, quinone and limited range of substrates that could be used. Antibiotic susceptibility and physiological characteristics were determined. The DNA G+C content was 65.7 mol%. Phylogenetic analysis revealed that the type strains of Stenotrophomonas terrae, Stenotrophomonashumi, Stenotrophomonasnitritireducens and Stenotrophomonasacidaminiphila were the nearest relatives (16S rRNA gene sequence similarity of 98.0 to 98.8 %). All the other type strains of species of the genus Stenotrophomonas showed high 16S rRNA gene sequence similarities (96.8 to 97.2 %). DNA-DNA hybridizations revealed 31.0, 32.0, 43.3 and 43.6 % reassociation between Pseudomonas pictorum ATCC 23328T and the type strains of S. terrae, S. humi, S. nitritireducens and S. acidaminiphila, respectively. Our overall results indicate that Pseudomonas pictorum should be transferred to the genus Stenotrophomonas as a novel species of this genus, Stenotrophomonas pictorum comb. nov. Since the original description of the genus Stenotrophomonaswas made with only one species (Stenotrophomonasmaltophilia), an emendation of the genus description is proposed in order to match better with the characteristics of the eleven novel species assigned to this genus since then.


Assuntos
Filogenia , Pseudomonas/classificação , Stenotrophomonas/classificação , Técnicas de Tipagem Bacteriana , Composição de Bases , DNA Bacteriano/genética , Hibridização de Ácido Nucleico , RNA Ribossômico 16S/genética , Análise de Sequência de DNA
4.
Int J Syst Evol Microbiol ; 67(8): 2779-2786, 2017 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-28820086

RESUMO

A Gram-stain negative, rod-shaped, aerobic bacterial strain, BII-R7T, was isolated during a study targeting the culture-dependent microbial diversity occurring in bentonite formations from southern Spain. Comparative 16S rRNA gene sequence analysis showed that BII-R7T represented a member of the genus Stenotrophomonas (class Gammaproteobacteria), and was related most closely to Stenotrophomonas rhizophila e-p10T (99.2 % sequence similarity), followed by Stenotrophomonas pavanii ICB 89T (98.5 %), Stenotrophomonas maltophilia IAM 12423T, Stenotrophomonas chelatiphaga LPM-5T and Stenotrophomonas tumulicola T5916-2-1bT (all 98.3 %). Pairwise sequence similarities to all other type strains of species of the genus Stenotrophomonas were below 98 %. Genome-based calculations (orthologous average nucleotide identity, original average nucleotide identity, genome-to-genome distance and DNA G+C percentage) indicated clearly that the isolate represents a novel species within this genus. Different phenotypic analyses, such as the detection of a quinone system composed of the major compound ubiquinone Q-8 and a fatty acid profile with iso-C15 : 0 and anteiso-C15 : 0 as major components, supported this finding at the same time as contributing to a comprehensive characterization of BII-R7T. Based on this polyphasic approach comprising phenotypic and genotypic/molecular characterization, BII-R7T can be differentiated clearly from its phylogenetic neighbours, establishing a novel species for which the name Stenotrophomonas bentonitica sp. nov. is proposed with BII-R7T as the type strain (=LMG 29893T=CECT 9180T=DSM 103927T).


Assuntos
Bentonita , Stenotrophomonas/classificação , Técnicas de Tipagem Bacteriana , Composição de Bases , DNA Bacteriano/genética , Ácidos Graxos/química , Hibridização de Ácido Nucleico , Filogenia , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Espanha , Stenotrophomonas/genética , Stenotrophomonas/isolamento & purificação , Ubiquinona/química
5.
J Environ Manage ; 180: 351-8, 2016 Sep 15.
Artigo em Inglês | MEDLINE | ID: mdl-27254294

RESUMO

Tubular upflow microbial fuel cell (MFC) utilizing sea food processing wastewater was evaluated for wastewater treatment efficiency and power generation. At an organic loading rate (OLR) of 0.6 g d(-1), the MFC accomplished total and soluble chemical oxygen demand (COD) removal of 83 and 95%, respectively. A maximum power density of 105 mW m(-2) (2.21 W m(-3)) was achieved at an OLR of 2.57 g d(-1). The predominant bacterial communities of anode biofilm were identified as RB1A (LC035455), RB1B (LC035456), RB1C (LC035457) and RB1E (LC035458). All the four strains belonged to genera Stenotrophomonas. The results of the study reaffirms that the seafood processing wastewater can be treated in an upflow MFC for simultaneous power generation and wastewater treatment.


Assuntos
Fontes de Energia Bioelétrica/microbiologia , Biofilmes , Stenotrophomonas/metabolismo , Eliminação de Resíduos Líquidos/métodos , Águas Residuárias/microbiologia , Purificação da Água/métodos , Análise da Demanda Biológica de Oxigênio , Eletricidade , Eletrodos , Alimentos Marinhos , Stenotrophomonas/classificação , Águas Residuárias/análise
6.
Wei Sheng Wu Xue Bao ; 54(5): 543-51, 2014 May 04.
Artigo em Zh | MEDLINE | ID: mdl-25199253

RESUMO

OBJECTIVE: To identify and characterize a marine bacterial strain producing agarase. METHODS: The agarase-producing bacterium was isolated from coastal sediments in Xiamen using agar as the sole carbon source. The strain was identified by the analyses of 16S rRNA gene sequence, phenotype and biochemical reactions. Agarase activity was determined by dinitrosalicylic acid method, and the category of agarase was assayed using chromogenic substrate. At last, the characteristics of agarase were determined. RESULTS: The results of the 16S rRNA phylogenetic, phenotypic and biochemical analyses showed that: the agar-degrading bacterium NTa belonged to the genus Stenotrophomonas sp.. The strain could produce extracellular agarases, including alpha-agarase and beta-agarase. The optimum temperature and pH of strain NTa agarase were 40 degrees C and 7.0, respectively. The enzymatic activity was stable below 30 degrees C. It also showed stability over a pH range between 7.0 and. 0. Ca2+ could activate agarase activity, and Na+, K+ and Mg2+ had no significant influence. However, Ag', Ba2 , Fe2' , Mn2', Cu2', Zn2+ and Fe3' inhibited the enzyme activity. The enzymatic activity of stain NTa agarase was inhibited by EDTA. The agarase had good resistance to some inhibitors, detergents and denaturant. CONCLUSION: Stenotrophomonas sp. NTa is a new type of agarase-producing strain, which can produce both alpha-agarase and beta-agarase and has potential applications in the production of agaro-oligosaccharide.


Assuntos
Proteínas de Bactérias/química , Proteínas de Bactérias/metabolismo , Glicosídeo Hidrolases/química , Glicosídeo Hidrolases/metabolismo , Água do Mar/microbiologia , Stenotrophomonas/enzimologia , Stenotrophomonas/isolamento & purificação , Proteínas de Bactérias/genética , Estabilidade Enzimática , Glicosídeo Hidrolases/genética , Concentração de Íons de Hidrogênio , Cinética , Dados de Sequência Molecular , Filogenia , Stenotrophomonas/classificação , Stenotrophomonas/genética , Temperatura
7.
Zhongguo Zhong Yao Za Zhi ; 39(24): 4754-8, 2014 Dec.
Artigo em Zh | MEDLINE | ID: mdl-25898572

RESUMO

Based on previous results of 16S rDNA sequence homologuous and results of physic-biochemical indexes and morphological characteristics in the present work, bacterial strain ge15 isolated from roots of ginseng plants was identified as Stenotrophomonas rhizophila. Confronting incubation results showed that, strain ge15 inhibited the growth of Alternaria panax, Phytophthora cactorum, and Cylindrocapon destructans significantly, and the width of inhibition zone was 13.3, 24.0, 12.0 mm, respectively. Further results showed that the emergence rate and seedling survive rate of ge15 treatment was significantly higher than those of the control, and which was similar to pesticide carbendazol treatment. The ge15 strain has good application potential in ginseng diseases control without contamination.


Assuntos
Alternaria/crescimento & desenvolvimento , Hypocreales/crescimento & desenvolvimento , Panax/microbiologia , Phytophthora/crescimento & desenvolvimento , Doenças das Plantas/microbiologia , Stenotrophomonas/fisiologia , Alternaria/fisiologia , Antibiose , Agentes de Controle Biológico , Hypocreales/fisiologia , Panax/crescimento & desenvolvimento , Phytophthora/fisiologia , Raízes de Plantas/crescimento & desenvolvimento , Raízes de Plantas/microbiologia , Plântula/crescimento & desenvolvimento , Plântula/microbiologia , Stenotrophomonas/classificação , Stenotrophomonas/citologia , Stenotrophomonas/isolamento & purificação
8.
Front Cell Infect Microbiol ; 14: 1410385, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38903940

RESUMO

Introduction: Stenotrophomonas is a prominent genus owing to its dual nature. Species of this genus have many applications in industry and agriculture as plant growth-promoting rhizobacteria and microbial biological control agents, whereas species such as Stenotrophomonas maltophilia are considered one of the leading gram-negative multi-drug-resistant bacterial pathogens because of their high contribution to the increase in crude mortality and significant clinical challenge. Pathogenic Stenotrophomonas species and most clinical isolates belong to the Stenotrophomonas maltophilia complex (SMc). However, a strain highly homologous to S. terrae was isolated from a patient with pulmonary tuberculosis (TB), which aroused our interest, as S. terrae belongs to a relatively distant clade from SMc and there have been no human association reports. Methods: The pathogenicity, immunological and biochemical characteristics of 610A2T were systematically evaluated. Results: 610A2T is a new species of genus Stenotrophomonas, which is named as Stenotrophomonas pigmentata sp. nov. for its obvious brown water-soluble pigment. 610A2T is pathogenic and caused significant weight loss, pulmonary congestion, and blood transmission in mice because it has multiple virulence factors, haemolysis, and strong biofilm formation abilities. In addition, the cytokine response induced by this strain was similar to that observed in patients with TB, and the strain was resistant to half of the anti-TB drugs. Conclusions: The pathogenicity of 610A2T may not be weaker than that of S. maltophilia. Its isolation extended the opportunistic pathogenic species to all 3 major clades of the genus Stenotrophomonas, indicating that the clinical importance of species of Stenotrophomonas other than S. maltophilia and potential risks to biological safety associated with the use of Stenotrophomonas require more attention.


Assuntos
Biofilmes , Infecções por Bactérias Gram-Negativas , Filogenia , Stenotrophomonas , Stenotrophomonas/isolamento & purificação , Stenotrophomonas/genética , Stenotrophomonas/classificação , Stenotrophomonas/patogenicidade , Animais , Infecções por Bactérias Gram-Negativas/microbiologia , Biofilmes/crescimento & desenvolvimento , Camundongos , Fatores de Virulência/genética , RNA Ribossômico 16S/genética , Humanos , DNA Bacteriano/genética , Análise de Sequência de DNA , Modelos Animais de Doenças , Hemólise , Técnicas de Tipagem Bacteriana
9.
Appl Microbiol Biotechnol ; 97(8): 3687-98, 2013 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-22644530

RESUMO

Three bacterial strains utilizing paracetamol as the sole carbon, nitrogen, and energy source were isolated from a paracetamol-degrading aerobic aggregate, and assigned to species of the genera Stenotrophomonas and Pseudomonas. The Stenotrophomonas species have not included any known paracetamol degraders until now. In batch cultures, the organisms f1, f2, and fg-2 could perform complete degradation of paracetamol at concentrations of 400, 2,500, and 2,000 mg/L or below, respectively. A combination of three microbial strains resulted in significantly improved degradation and mineralization of paracetamol. The co-culture was able to use paracetamol up to concentrations of 4,000 mg/L, and mineralized 87.1 % of the added paracetamol at the initial of 2,000 mg/L. Two key metabolites of the biodegradation pathway of paracetamol, 4-aminophenol, and hydroquinone were detected. Paracetamol was degraded predominantly via 4-aminophenol to hydroquinone with subsequent ring fission, suggesting new pathways for paracetamol-degrading bacteria. The degradation of paracetamol could thus be performed by the single isolates, but is stimulated by a synergistic interaction of the three-member consortium, suggesting a possible complementary interaction among the various isolates. The exact roles of each of the strains in the consortium need to be further elucidated.


Assuntos
Acetaminofen/metabolismo , Consórcios Microbianos , Pseudomonas/metabolismo , Stenotrophomonas/metabolismo , Aminofenóis/metabolismo , Biotransformação , Carbono/metabolismo , DNA Bacteriano/química , DNA Bacteriano/genética , DNA Ribossômico/química , DNA Ribossômico/genética , Hidroquinonas/metabolismo , Redes e Vias Metabólicas/genética , Dados de Sequência Molecular , Pseudomonas/classificação , Pseudomonas/isolamento & purificação , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Stenotrophomonas/classificação , Stenotrophomonas/isolamento & purificação
10.
World J Microbiol Biotechnol ; 28(3): 1071-9, 2012 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-22805828

RESUMO

A Psychrotolerant alkaline protease producing bacterium IIIM-ST045 was isolated from a soil sample collected from the Thajiwas glacier of Kashmir, India and identified as Stenotrophomonas sp. on the basis of its biochemical properties and 16S ribosomal gene sequencing. The strain could grow well within a temperature range of 4-37°C however, showed optimum growth at 15°C. The strain was found to over-produce proteases when it was grown in media containing lactose as carbon source (157.50 U mg(-1)). The maximum specific enzyme activity (398 U mg(-1)) was obtained using soya oil as nitrogen source, however, the inorganic nitrogen sources urea, ammonium chloride and ammonium sulphate showed the lowest production of 38.9, 62.2 and 57.9 U mg(-1). The enzyme was purified to 18.45 folds and the molecular weight of the partially purified protease was estimated to be ~55 kDa by SDS-PAGE analysis. The protease activity increased as the increase in enzyme concentration while as the optimum enzyme activity was found when casein (1% w/v) was used as substrate. The enzyme was highly active over a wide range of pH from 6.5 to 12.0 showing optimum activity at pH 10.0. The optimum temperature for the enzyme was 15°C. Proteolytic activity reduced gradually with higher temperatures with a decrease of 56% at 40°C. The purified enzyme was checked for the removal of protein containing tea stains using a silk cloth within a temperature range of 10-60°C. The best washing efficiency results obtained at low temperatures indicate that the enzyme may be used for cold washing purposes of delicate fabrics that otherwise are vulnerable to high temperatures.


Assuntos
Proteínas de Bactérias/isolamento & purificação , Proteínas de Bactérias/metabolismo , Endopeptidases/isolamento & purificação , Endopeptidases/metabolismo , Stenotrophomonas/enzimologia , Proteínas de Bactérias/química , Técnicas de Tipagem Bacteriana , Carbono/metabolismo , Temperatura Baixa , Meios de Cultura/química , DNA Bacteriano/química , DNA Bacteriano/genética , DNA Ribossômico/química , DNA Ribossômico/genética , Eletroforese em Gel de Poliacrilamida , Endopeptidases/química , Estabilidade Enzimática , Concentração de Íons de Hidrogênio , Índia , Dados de Sequência Molecular , Peso Molecular , Nitrogênio/metabolismo , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Microbiologia do Solo , Stenotrophomonas/classificação , Stenotrophomonas/genética , Stenotrophomonas/isolamento & purificação
11.
Int J Syst Evol Microbiol ; 61(Pt 4): 926-931, 2011 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-20495025

RESUMO

A Gram-negative, rod-shaped, non-spore-forming and nitrogen-fixing bacterium, designated ICB 89(T), was isolated from stems of a Brazilian sugar cane variety widely used in organic farming. 16S rRNA gene sequence analysis revealed that strain ICB 89(T) belonged to the genus Stenotrophomonas and was most closely related to Stenotrophomonas maltophilia LMG 958(T), Stenotrophomonas rhizophila LMG 22075(T), Stenotrophomonas nitritireducens L2(T), [Pseudomonas] geniculata ATCC 19374(T), [Pseudomonas] hibiscicola ATCC 19867(T) and [Pseudomonas] beteli ATCC 19861(T). DNA-DNA hybridization together with chemotaxonomic data and biochemical characteristics allowed the differentiation of strain ICB 89(T) from its nearest phylogenetic neighbours. Therefore, strain ICB 89(T) represents a novel species, for which the name Stenotrophomonas pavanii sp. nov. is proposed. The type strain is ICB 89(T) ( = CBMAI 564(T)  = LMG 25348(T)).


Assuntos
Fixação de Nitrogênio , Saccharum/microbiologia , Stenotrophomonas/classificação , Stenotrophomonas/isolamento & purificação , Brasil , Análise por Conglomerados , DNA Bacteriano/química , DNA Bacteriano/genética , DNA Ribossômico/química , DNA Ribossômico/genética , Dados de Sequência Molecular , Hibridização de Ácido Nucleico , Agricultura Orgânica , Filogenia , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Stenotrophomonas/genética , Stenotrophomonas/fisiologia
12.
Int J Syst Evol Microbiol ; 61(Pt 3): 598-604, 2011 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-20400671

RESUMO

A Gram-stain-negative, motile, aerobic bacterial strain, designated MJ03(T), was isolated from sewage and was characterized taxonomically by using a polyphasic approach. Comparative 16S rRNA gene sequence analysis showed that strain MJ03(T) belongs to the family Xanthomonadaceae, class Gammaproteobacteria, and was related most closely to Stenotrophomonas acidaminiphila AMX 19(T) (97.9  % sequence similarity), Stenotrophomonas humi R-32729(T) (97.1  %), Stenotrophomonas nitritireducens L2(T) (96.9  %), Stenotrophomonas maltophila ATCC 13637(T) (96.8  %) and Stenotrophomonas terrae R-32768(T) (96.7  %). The G+C content of the genomic DNA of strain MJ03(T) was 64.7 mol%. The detection of a quinone system with ubiquinone Q-8 as the predominant component and a fatty acid profile with iso-C15:0, iso-C11:0, iso-C14:0, iso-C17:1ω9c, iso-C11:0 3-OH and iso-C13:0 3-OH as major components supported the affiliation of strain MJ03(T) to the genus Stenotrophomonas. However, levels of DNA-DNA relatedness between strain MJ03(T) and the type strains of five closely related species of the genus Stenotrophomonas ranged from 11 to 34  %, showing clearly that the isolate represents a novel genospecies. Strain MJ03(T) could be differentiated clearly from its phylogenetic neighbours on the basis of several phenotypic, genotypic and chemotaxonomic features. Therefore, strain MJ03(T) is considered to represent a novel species of the genus Stenotrophomonas, for which the name Stenotrophomonas daejeonensis sp. nov. is proposed. The type strain is MJ03(T) (=KCTC 22451(T) =JCM 16244(T)).


Assuntos
Esgotos/microbiologia , Stenotrophomonas/classificação , Stenotrophomonas/isolamento & purificação , Composição de Bases , Análise por Conglomerados , DNA Bacteriano/química , DNA Bacteriano/genética , DNA Ribossômico/química , DNA Ribossômico/genética , Ácidos Graxos/análise , Dados de Sequência Molecular , Hibridização de Ácido Nucleico , Filogenia , Quinonas/análise , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Stenotrophomonas/genética , Stenotrophomonas/fisiologia
13.
Biodegradation ; 22(2): 321-33, 2011 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-20859654

RESUMO

This study uncovered microbial characteristics of bioelectricity generation and dye decolorization in single-chamber microbial fuel cells (MFCs) using activated sludge for wine-containing wastewater treatment. Phylogenetic tree analysis on 16S rRNA gene fragments indicated that the predominant strains on anodic biofilm in acclimatized MFCs were Gamma-Proteobacteria Aeromonas punctata NIU-P9, Pseudomonas plecoglossicida NIU-Y3, Pseudomonas koreensis NIU-X8, Acinetobacter junii NIU-Y8, Stenotrophomonas maltophila NIU-X2. Our findings showed that the current production capabilities of these pure strains were only ca. 10% of those of their mother activated sludge, indicating that synergistic interactions among microbes might be the most influential factor to maximize power generation in MFCs. Plus, these electrochemically active strains also performed reductive decolorization of C.I. reactive blue 160, suggesting that bioelectricity generation might be directly associated to azo dye decolorization to deal with electron transfer on anodic biofilm in MFCs.


Assuntos
Fontes de Energia Bioelétrica , Esgotos/microbiologia , Purificação da Água/métodos , Vinho , Acinetobacter/classificação , Acinetobacter/genética , Aeromonas/classificação , Aeromonas/genética , Corantes/metabolismo , Eletroquímica , Gammaproteobacteria/classificação , Gammaproteobacteria/genética , Filogenia , Pseudomonas/classificação , Pseudomonas/genética , RNA Ribossômico 16S/genética , Stenotrophomonas/classificação , Stenotrophomonas/genética
14.
J Appl Microbiol ; 108(3): 756-770, 2010 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-19702860

RESUMO

The exploration of new source materials and the use of alternative isolation and identification methods have led to rapid expansion in the knowledge of diversity; in Lysobacter, 11 new species having been described since 2005, and in Stenotrophomonas with six new species since 2000. The new species of Lysobacter, isolated by dilution and direct plating on standard media, differ in several key phenotypic properties from those obtained by enrichment on complex polysaccharides in the original description of the genus. Revision of the definition of the genus will be required. Both culture-dependent and culture-independent methods to assess community structure, in a variety of host and nonhost environments, have established that some species of Lysobacter are a dominant component of the microflora, where previously their presence had not been suspected. Culture-independent studies have generally not added new information on the occurrence and distribution of Stenotrophomonas maltophilia and other members of the genus, which are readily isolated on standard media from source materials. Lysobacter enzymogenes and Sten. maltophilia produce similar antibiotics and share some enzyme activities which, subject to safety considerations, may make them attractive candidates for use in biological control of plant diseases and of nematodes.


Assuntos
Lysobacter/classificação , Plantas/microbiologia , Microbiologia do Solo , Stenotrophomonas/classificação , Animais , Ecossistema , Genômica , Lysobacter/genética , Lysobacter/isolamento & purificação , Nematoides , Controle Biológico de Vetores , Fenótipo , Filogenia , Doenças das Plantas/microbiologia , Doenças das Plantas/prevenção & controle , Stenotrophomonas/genética , Stenotrophomonas/isolamento & purificação
15.
Appl Microbiol Biotechnol ; 86(1): 353-8, 2010 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-19956940

RESUMO

Denitrifying sulfide removal (DSR) process simultaneously converts sulfide, nitrate, and chemical oxygen demand from industrial wastewaters to elemental sulfur, nitrogen gas, and carbon dioxide, respectively. This investigation utilizes a dilution-to-extinction approach at 10(-2) to 10(-6) dilutions to elucidate the correlation between the composition of the microbial community and the DSR performance. In the original suspension and in 10(-2) dilution, the strains Stenotrophomonas sp., Thauera sp., and Azoarcus sp. are the heterotrophic denitrifiers and the strains Paracoccus sp. and Pseudomonas sp. are the sulfide-oxidizing denitrifers. The 10(-4) dilution is identified as the functional consortium for the present DSR system, which comprises two functional strains, Stenotrophomonas sp. strain Paracoccus sp. At 10(-6) dilution, all DSR performance was lost. The functions of the constituent cells in the DSR granules were discussed based on data obtained using the dilution-to-extinction approach.


Assuntos
Ecossistema , Bactérias Gram-Negativas , Nitratos/metabolismo , Pseudomonas , Sulfetos/metabolismo , Azoarcus/classificação , Azoarcus/genética , Azoarcus/crescimento & desenvolvimento , Azoarcus/metabolismo , Bactérias Gram-Negativas/classificação , Bactérias Gram-Negativas/genética , Bactérias Gram-Negativas/crescimento & desenvolvimento , Bactérias Gram-Negativas/metabolismo , Resíduos Industriais , Oxirredução , Paracoccus/classificação , Paracoccus/genética , Paracoccus/crescimento & desenvolvimento , Paracoccus/metabolismo , Pseudomonas/classificação , Pseudomonas/genética , Pseudomonas/crescimento & desenvolvimento , Pseudomonas/metabolismo , Stenotrophomonas/classificação , Stenotrophomonas/genética , Stenotrophomonas/crescimento & desenvolvimento , Stenotrophomonas/metabolismo , Thauera/classificação , Thauera/genética , Thauera/crescimento & desenvolvimento , Thauera/metabolismo , Eliminação de Resíduos Líquidos/métodos , Microbiologia da Água
16.
Biodegradation ; 21(5): 801-13, 2010 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-20217461

RESUMO

A bacterium growing on pyrazine-2-carboxylate broth was isolated, purified and identified as a strain of Stenotrophomonas sp. based on polyphasic taxonomic analyses and designated as strain HCU1. 16S rRNA gene sequence of strain HCU1 showed 98.7% sequence similarity with the type strain of Stenotrophomonas maltophilia belonging to Gammaproteobacteria. Growth of strain HCU1 was demonstrated when pyrazine-2-carboxylate was used as a sole source of nitrogen. Ring reduction of pyrazine-2-carboxylate was shown as increase in absorbance at 268 nm and the reduced product was confirmed as 1,2,5,6-tetrahydropyrazine-2-carboxylate, while a ring opened product, 2-amino-2-hydroxy-3-(methylamino) propanoic acid (with a loss in carbon atom), indicated a reductive degradation of pyrazine-2-carboxylate by strain HCU1.


Assuntos
Pirazinas/metabolismo , Stenotrophomonas/isolamento & purificação , Sequência de Aminoácidos , Proteínas de Bactérias/química , Biodegradação Ambiental , Cromatografia Líquida de Alta Pressão , Eletroforese em Gel de Poliacrilamida , Ensaios Enzimáticos , Cinética , Dados de Sequência Molecular , Peso Molecular , Oxirredução , Peptídeos/química , Filogenia , Pirazinas/química , RNA Ribossômico 16S/genética , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz , Espectroscopia de Infravermelho com Transformada de Fourier , Stenotrophomonas/classificação , Stenotrophomonas/genética , Stenotrophomonas/crescimento & desenvolvimento
17.
Wei Sheng Wu Xue Bao ; 50(11): 1488-93, 2010 Nov.
Artigo em Zh | MEDLINE | ID: mdl-21268894

RESUMO

OBJECTIVE: We screened and isolated polyhydroxyalkanoate producing bacteria. METHODS: The strains were isolated from sludge from a beer brewery and screened by Sudan black B staining method. The isolated strains were identified according to their morphological features, physiological and biochemical analysis as well as 16S rRNA gene sequence analysis. The product extracted with hot chloroform from the isolated strain HG-B-1 was confirmed by Fourier transform infrared spectra. RESULTS: We isolated a bacterium, HG-B-1, from sludge collected from a beer brewery in Guangdong province, China. The yield of polyhydroxyalkanoates was 23.4% (w/w) based on dried weight of the bacterium cells when HG-B-1 grew in a medium containing saccharose. We analyzed 16S rRNA nucleotide sequence, and ascertained the phylogenetic position of the strain. CONCLUSION: Strain HG-B-1 with PHAs biosynthesis ability was identified as Stenotrophomonas maltophlia.


Assuntos
Poli-Hidroxialcanoatos/metabolismo , Esgotos/microbiologia , Stenotrophomonas/isolamento & purificação , Stenotrophomonas/metabolismo , China , DNA Bacteriano/genética , Dados de Sequência Molecular , Filogenia , RNA Ribossômico 16S/genética , Stenotrophomonas/classificação , Stenotrophomonas/genética
18.
Braz J Microbiol ; 51(4): 1515-1526, 2020 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-32488841

RESUMO

The Xanthomonadaceae family comprises the genera Xanthomonas and Xylella, which include plant pathogenic species that affect economically important crops. The family also includes the plant growth-promoting bacteria Pseudomonas geniculata and Stenotrophomonas rhizophila, and some other species with biotechnological, medical, and environmental relevance. Previous work identified molecular signatures that helped to understand the evolutionary placement of this family within gamma-proteobacteria. In the present study, we investigated whether insertions identified in highly conserved proteins may also be used as molecular markers for taxonomic classification and identification of members within the Xanthomonadaceae family. Four housekeeping proteins (DNA repair and replication-related and protein translation enzymes) were selected. The insertions allowed discriminating phytopathogenic and plant growth-promoting groups within this family, and also amino acid sequences of these insertions allowed distinguishing different genera and, eventually, species as well as pathovars. Moreover, insertions in the proteins MutS and DNA polymerase III (subunit alpha) are conserved in Xylella fastidiosa, but signatures in DNA ligase NAD-dependent and Valyl tRNA synthetase distinguish particular subspecies within the genus. The genus Stenotrophomonas and Pseudomonas geniculata could be distinguishable based on the insertions in MutS, DNA polymerase III (subunit alpha), and Valyl tRNA synthetase, although insertion in DNA ligase NAD-dependent discriminates these bacteria at the species level. All these insertions differentiate species and pathovars within Xanthomonas. Thus, the insertions presented support evolutionary demarcation within Xanthomonadaceae and provide tools for the fast identification in the field of these bacteria with agricultural, environmental, and economic relevance.


Assuntos
Proteínas de Bactérias/genética , DNA Bacteriano , Pseudomonas , Stenotrophomonas , Marcadores Genéticos , Mutagênese Insercional , Filogenia , Pseudomonas/classificação , Stenotrophomonas/classificação
19.
Afr Health Sci ; 20(1): 168-181, 2020 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-33402905

RESUMO

BACKGROUND: Stenotrophomonas species are multi-resistant bacteria with ability to cause opportunistic infections. OBJECTIVE: We isolated 45 Stenotrophomonas species from soil, sewage and the clinic with the aim of investigating their susceptibility to commonly used antimicrobial agents. METHODOLOGY: The identities of isolates were confirmed with 16S rRNA gene sequence and MALDI-TOF analysis. Anti-microbial resistance, biofilm production and clonal diversity were also evaluated. The minimum inhibitory concentration technique as described by Clinical & Laboratory Standards Institute: CLSI Guidelines (CLSI) was employed for the evaluation of isolate susceptibility to antibiotics. RESULT: Forty-five Stenotrophomonas species which include 36 environmental strains and 9 clinical strains of S. maltophilia were considered in this study. 32 (88.9 %) environmental strains were identified to be S. maltophilia, 2 (5.6 %) were Stenotrophomonas nitritireducens, and 2 (5.6 %) cluster as Stenotrophomonas spp. Stenotrophomonas isolates were resistant to at least six of the antibiotics tested, including Trimethoprim/Sulfamethoxazole (SXT). CONCLUSION: Environmental isolates from this study were resistant to SXT which is commonly used for the treatment of S. maltophilia infections. This informs the need for good public hygiene as the environment could be a reservoir of multi-resistant bacteria. It also buttresses the importance of surveillance study in the management of bacterial resistance.


Assuntos
Antibacterianos/farmacologia , Infecções por Bactérias Gram-Negativas/tratamento farmacológico , Espectrometria de Massas/métodos , Esgotos/microbiologia , Stenotrophomonas/efeitos dos fármacos , Stenotrophomonas/isolamento & purificação , Combinação Trimetoprima e Sulfametoxazol/uso terapêutico , Proteínas de Bactérias/genética , Biofilmes/efeitos dos fármacos , Humanos , México , Testes de Sensibilidade Microbiana , Filogenia , Reação em Cadeia da Polimerase , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Microbiologia do Solo , Stenotrophomonas/classificação , Stenotrophomonas/genética
20.
Syst Appl Microbiol ; 32(3): 157-62, 2009 May.
Artigo em Inglês | MEDLINE | ID: mdl-19216044

RESUMO

A new ethylenediaminetetraacetic acid (EDTA)-utilizing gammaproteobacterial strain LPM-5(T) was isolated from municipal sewage sludge. Aerobic, gram-negative, motile rods multiply by binary fission. Neutrophilic and mesophilic, these are unable to grow in the presence of 3% NaCl (w/v), and unable to reduce nitrate to nitrite, and are oxidase and catalase positive, but lipase negative. The major cellular fatty acids are C(i15:0), C(a15:0) and C(16:1w7c). The dominant phospholipids are phosphatidylethanolamine, phosphatidylglycerol and diphosphatidylglycerol (cardiolipin). The DNA G+C content is 68.3mol% (T(m)). The 16S rRNA gene sequence analysis showed a high similarity of strain LPM-5(T) to the species members of genus Stenotrophomonas: S. maltophilia LMG 958(T) (98.6%), S. rhizophila CCUG 47042(T) (98.3%), S. koreensis TR6-01(T) (97.6%) and S. acidaminiphila CIP 106456(T) (97.0%). Based on these results and modest DNA-DNA hybridization levels with S. maltophilia VKM B-591(T) (=LMG 958(T)) (51%) and S. rhizophila CCUG 47042(T) (52%), the isolate was classified as a novel species, Stenotrophomonas chelatiphaga sp. nov. (type strain LPM-5(T)=VKM B-2486=DSM-21508=CCUG 57178).


Assuntos
Ácido Edético/metabolismo , Stenotrophomonas/classificação , Aerobiose , Técnicas de Tipagem Bacteriana , DNA Bacteriano/análise , DNA Ribossômico/análise , Ácidos Graxos/análise , Genes de RNAr , Hibridização de Ácido Nucleico , Fosfolipídeos/análise , Filogenia , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Esgotos/microbiologia , Especificidade da Espécie , Stenotrophomonas/genética , Stenotrophomonas/isolamento & purificação , Stenotrophomonas/fisiologia
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