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The IPASC data format: A consensus data format for photoacoustic imaging.
Gröhl, Janek; Hacker, Lina; Cox, Ben T; Dreher, Kris K; Morscher, Stefan; Rakotondrainibe, Avotra; Varray, François; Yip, Lawrence C M; Vogt, William C; Bohndiek, Sarah E.
Afiliação
  • Gröhl J; Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, United Kingdom.
  • Hacker L; Department of Physics, University of Cambridge, Cambridge, United Kingdom.
  • Cox BT; Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, United Kingdom.
  • Dreher KK; Department of Physics, University of Cambridge, Cambridge, United Kingdom.
  • Morscher S; Department of Medical Physics and Biomedical Engineering, University College London, London, United Kingdom.
  • Rakotondrainibe A; German Cancer Research Center, Division of Computer Assisted Medical Interventions, Heidelberg, Germany.
  • Varray F; Heidelberg University, Faculty of Physics and Astronomy, Heidelberg, Germany.
  • Yip LCM; iThera Medical GmbH, Munich, Germany.
  • Vogt WC; iThera Medical GmbH, Munich, Germany.
  • Bohndiek SE; Univ Lyon, INSA-Lyon, Université Claude Bernard Lyon 1, CNRS, Inserm, CREATIS UMR 5220, U1294, F-69621, Lyon, France.
Photoacoustics ; 26: 100339, 2022 Jun.
Article em En | MEDLINE | ID: mdl-35287304
Photoacoustic imaging (PAI) is an emerging modality that has shown promise for improving patient management in a range of applications. Unfortunately, the current lack of uniformity in PAI data formats compromises inter-user data exchange and comparison, which impedes: technological progress; effective research collaboration; and efforts to deliver multi-centre clinical trials. To overcome this challenge, the International Photoacoustic Standardisation Consortium (IPASC) has established a data format with a defined consensus metadata structure and developed an open-source software application programming interface (API) to enable conversion from proprietary file formats into the IPASC format. The format is based on Hierarchical Data Format 5 (HDF5) and designed to store photoacoustic raw time series data. Internal quality control mechanisms are included to ensure completeness and consistency of the converted data. By unifying the variety of proprietary data and metadata definitions into a consensus format, IPASC hopes to facilitate the exchange and comparison of PAI data.
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Texto completo: 1 Base de dados: MEDLINE Idioma: En Ano de publicação: 2022 Tipo de documento: Article

Texto completo: 1 Base de dados: MEDLINE Idioma: En Ano de publicação: 2022 Tipo de documento: Article