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Genome-wide association studies of human and rat BMI converge on synapse, epigenome, and hormone signaling networks.
Wright, Sarah N; Leger, Brittany S; Rosenthal, Sara Brin; Liu, Sophie N; Jia, Tongqiu; Chitre, Apurva S; Polesskaya, Oksana; Holl, Katie; Gao, Jianjun; Cheng, Riyan; Garcia Martinez, Angel; George, Anthony; Gileta, Alexander F; Han, Wenyan; Netzley, Alesa H; King, Christopher P; Lamparelli, Alexander; Martin, Connor; St Pierre, Celine L; Wang, Tengfei; Bimschleger, Hannah; Richards, Jerry; Ishiwari, Keita; Chen, Hao; Flagel, Shelly B; Meyer, Paul; Robinson, Terry E; Solberg Woods, Leah C; Kreisberg, Jason F; Ideker, Trey; Palmer, Abraham A.
Afiliação
  • Wright SN; Department of Medicine, University of California San Diego, La Jolla, CA 92093, USA; Program in Bioinformatics and Systems Biology, University of California San Diego, La Jolla, CA 92093, USA.
  • Leger BS; Department of Psychiatry, University of California San Diego, La Jolla, CA 93093, USA; Program in Biomedical Sciences, University of California San Diego, La Jolla, CA 93093, USA.
  • Rosenthal SB; Center for Computational Biology & Bioinformatics, Department of Medicine, University of California, San Diego, La Jolla, CA 92093, USA.
  • Liu SN; Department of Medicine, University of California San Diego, La Jolla, CA 92093, USA.
  • Jia T; Department of Medicine, University of California San Diego, La Jolla, CA 92093, USA.
  • Chitre AS; Department of Psychiatry, University of California San Diego, La Jolla, CA 93093, USA.
  • Polesskaya O; Department of Psychiatry, University of California San Diego, La Jolla, CA 93093, USA.
  • Holl K; Department of Physiology, Medical College of Wisconsin, Milwaukee, WI 53226, USA.
  • Gao J; Department of Psychiatry, University of California San Diego, La Jolla, CA 93093, USA.
  • Cheng R; Department of Psychiatry, University of California San Diego, La Jolla, CA 93093, USA.
  • Garcia Martinez A; Department of Pharmacology, University of Tennessee Health Science Center, Memphis, TN 38163, USA.
  • George A; Clinical and Research Institute on Addictions, University at Buffalo, Buffalo, NY 14203, USA.
  • Gileta AF; Department of Psychiatry, University of California San Diego, La Jolla, CA 93093, USA; Department of Human Genetics, University of Chicago, Chicago, IL 60637, USA.
  • Han W; Department of Pharmacology, University of Tennessee Health Science Center, Memphis, TN 38163, USA.
  • Netzley AH; Department of Psychiatry, University of Michigan, Ann Arbor, MI 48109, USA.
  • King CP; Clinical and Research Institute on Addictions, University at Buffalo, Buffalo, NY 14203, USA; Department of Psychology, University at Buffalo, Buffalo, NY 14260, USA.
  • Lamparelli A; Department of Psychology, University at Buffalo, Buffalo, NY 14260, USA.
  • Martin C; Clinical and Research Institute on Addictions, University at Buffalo, Buffalo, NY 14203, USA; Department of Psychology, University at Buffalo, Buffalo, NY 14260, USA.
  • St Pierre CL; Department of Genetics, Washington University, St. Louis, MO 63110, USA.
  • Wang T; Department of Pharmacology, University of Tennessee Health Science Center, Memphis, TN 38163, USA.
  • Bimschleger H; Department of Psychiatry, University of California San Diego, La Jolla, CA 93093, USA.
  • Richards J; Clinical and Research Institute on Addictions, University at Buffalo, Buffalo, NY 14203, USA.
  • Ishiwari K; Clinical and Research Institute on Addictions, University at Buffalo, Buffalo, NY 14203, USA; Department of Pharmacology and Toxicology, University at Buffalo, Buffalo, NY 14203, USA.
  • Chen H; Department of Pharmacology, University of Tennessee Health Science Center, Memphis, TN 38163, USA.
  • Flagel SB; Department of Psychiatry, University of Michigan, Ann Arbor, MI 48109, USA; Michigan Neuroscience Institute, University of Michigan, Ann Arbor, MI 48109, USA.
  • Meyer P; Department of Psychology, University at Buffalo, Buffalo, NY 14260, USA.
  • Robinson TE; Department of Psychology, University of Michigan, Ann Arbor, MI 48109, USA.
  • Solberg Woods LC; Department of Internal Medicine, Wake Forest School of Medicine, Winston-Salem, NC 27157, USA.
  • Kreisberg JF; Department of Medicine, University of California San Diego, La Jolla, CA 92093, USA.
  • Ideker T; Department of Medicine, University of California San Diego, La Jolla, CA 92093, USA; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA 92093, USA. Electronic address: tideker@ucsd.edu.
  • Palmer AA; Department of Psychiatry, University of California San Diego, La Jolla, CA 93093, USA; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA 92093, USA. Electronic address: aap@ucsd.edu.
Cell Rep ; 42(8): 112873, 2023 08 29.
Article em En | MEDLINE | ID: mdl-37527041
A vexing observation in genome-wide association studies (GWASs) is that parallel analyses in different species may not identify orthologous genes. Here, we demonstrate that cross-species translation of GWASs can be greatly improved by an analysis of co-localization within molecular networks. Using body mass index (BMI) as an example, we show that the genes associated with BMI in humans lack significant agreement with those identified in rats. However, the networks interconnecting these genes show substantial overlap, highlighting common mechanisms including synaptic signaling, epigenetic modification, and hormonal regulation. Genetic perturbations within these networks cause abnormal BMI phenotypes in mice, too, supporting their broad conservation across mammals. Other mechanisms appear species specific, including carbohydrate biosynthesis (humans) and glycerolipid metabolism (rodents). Finally, network co-localization also identifies cross-species convergence for height/body length. This study advances a general paradigm for determining whether and how phenotypes measured in model species recapitulate human biology.
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Texto completo: 1 Base de dados: MEDLINE Assunto principal: Índice de Massa Corporal / Redes Reguladoras de Genes Tipo de estudo: Risk_factors_studies Limite: Animals / Humans Idioma: En Ano de publicação: 2023 Tipo de documento: Article

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Índice de Massa Corporal / Redes Reguladoras de Genes Tipo de estudo: Risk_factors_studies Limite: Animals / Humans Idioma: En Ano de publicação: 2023 Tipo de documento: Article