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A variant on the CREST iMTD algorithm for noncovalent clusters of flexible molecules.
King, Nathanael J; LeBlanc, Ian D; Brown, Alex.
Afiliação
  • King NJ; Department of Chemistry, University of Alberta, Edmonton, Canada.
  • LeBlanc ID; Department of Computer Science, Grant MacEwan University, Edmonton, Canada.
  • Brown A; Department of Chemistry, University of Alberta, Edmonton, Canada.
J Comput Chem ; 45(29): 2431-2445, 2024 Nov 05.
Article em En | MEDLINE | ID: mdl-38944673
ABSTRACT
Conformational ensemble generation and the search for the global minimum conformation are important problems in computational chemistry. In this work, a variant on the conformer-rotamer ensemble sampling tool (CREST) iterative metadynamics (iMTD) algorithm designed for determining structural ensembles and energetics of noncovalent clusters of flexible molecules is presented. We term this new algorithm a low-energy diversity-enhanced variant on CREST, or LEDE-CREST. As with CREST, the energies are evaluated using the semiempirical GFN2-xTB extended tight binding approach. The utility of the algorithm is highlighted by generating ensembles for a variety of noncovalent clusters of flexible or rigid monomers using both CREST and LEDE-CREST.
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Texto completo: 1 Base de dados: MEDLINE Idioma: En Ano de publicação: 2024 Tipo de documento: Article

Texto completo: 1 Base de dados: MEDLINE Idioma: En Ano de publicação: 2024 Tipo de documento: Article