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1.
N Biotechnol ; 78: 105-115, 2023 Dec 25.
Article in English | MEDLINE | ID: mdl-37848161

ABSTRACT

The halotolerant non-conventional yeast Debaryomyces hansenii can grow in media containing high concentrations of salt (up to 4 M), metabolize alternative carbon sources than glucose, such as lactose or glycerol, and withstand a wide range of temperatures and pH. These inherent capabilities allow this yeast to grow in harsh environments and use alternative feedstock than traditional commercial media. For example, D. hansenii could be a potential cell factory for revalorizing industrial salty by-products, using them as a substrate for producing new valuable bioproducts, boosting a circular economy. In this work, three different salty by-products derived from the dairy and biopharmaceutical industry have been tested as a possible feedstock for D. hansenii's growth. The yeast was not only able to grow efficiently in all of them but also to produce a recombinant protein (Yellow Fluorescent Protein, used as a model) without altering its performance. Moreover, open cultivations at different laboratory scales (1.5 mL and 1 L) were performed under non-sterile conditions and without adding fresh water or any nutritional supplement to the cultivation, making the process cheaper and more sustainable.


Subject(s)
Debaryomyces , Saccharomycetales , Debaryomyces/metabolism , Saccharomyces cerevisiae/metabolism , Rivers , Sodium Chloride , Recombinant Proteins/metabolism , Saccharomycetales/metabolism
2.
Microb Biotechnol ; 16(2): 404-417, 2023 Feb.
Article in English | MEDLINE | ID: mdl-36420701

ABSTRACT

The dairy industry processes vast amounts of milk and generates high amounts of secondary by-products, which are still rich in nutrients (high Chemical Oxygen Demand (COD) and Biochemical Oxygen Demand (BOD) levels) but contain high concentrations of salt. The current European legislation only allows disposing of these effluents directly into the waterways with previous treatment, which is laborious and expensive. Therefore, as much as possible, these by-products are reutilized as animal feed material and, if not applicable, used as fertilizers adding phosphorus, potassium, nitrogen, and other nutrients to the soil. Finding biological alternatives to revalue dairy by-products is of crucial interest in order to improve the utilization of dry dairy matter and reduce the environmental impact of every litre of milk produced. Debaryomyces hansenii is a halotolerant non-conventional yeast with high potential for this purpose. It presents some beneficial traits - capacity to metabolize a variety of sugars, tolerance to high osmotic environments, resistance to extreme temperatures and pHs - that make this yeast a well-suited option to grow using complex feedstock, such as industrial waste, instead of the traditional commercial media. In this work, we study for the first time D. hansenii's ability to grow and produce a recombinant protein (YFP) from dairy saline whey by-products. Cultivations at different scales (1.5, 100 and 500 ml) were performed without neither sterilizing the medium nor using pure water. Our results conclude that D. hansenii is able to perform well and produce YFP in the aforementioned salty substrate. Interestingly, it is able to outcompete other microorganisms present in the waste without altering its cell performance or protein production capacity.


Subject(s)
Debaryomyces , Animals , Debaryomyces/metabolism , Saccharomyces cerevisiae/metabolism , Dairying , Sodium Chloride/metabolism , Recombinant Proteins/metabolism
3.
J Infect Public Health ; 13(8): 1078-1088, 2020 Aug.
Article in English | MEDLINE | ID: mdl-32299687

ABSTRACT

The aim of this systematic review was to investigate the studies that evaluated the sensitivity and specificity of serologic tests using recombinant protein antigens from Mycobacterium leprae for leprosy diagnosis. We included 13 studies that were available in PubMed, Brazilian Virtual Library of Health, Web of Science, ScienceDirect and Scopus. From these studies, we found that the recombinant serine-rich 45-kDa protein of M. leprae (ML0411) demonstrated high performance for multibacillary (MB) also to paucibacillary (PB) patients, although this study was tested only for Indian population. Despite that, studies using the ND-O-LID antigen have been able to more accurately identify new cases of leprosy among people living in endemic or non-endemic areas and household contacts in Brazil, Colombia, and the Philippines, especially when combined with other biomarkers. Finally, low sensitivity values for PB patients' antibodies response remain challenging for tests intended to diagnose clinical forms that comprise this classification in leprosy.


Subject(s)
Leprosy , Mycobacterium leprae , Recombinant Proteins , Serologic Tests , Antibodies, Bacterial/blood , Antigens, Bacterial/metabolism , Brazil , Colombia , Humans , Leprosy/diagnosis , Mycobacterium leprae/immunology , Philippines , Recombinant Proteins/metabolism , Reproducibility of Results , Serologic Tests/standards
4.
Int J Biol Macromol ; 146: 648-660, 2020 Mar 01.
Article in English | MEDLINE | ID: mdl-31883890

ABSTRACT

Mycobacterium leprae, causative organism of leprosy, is known to counter redox stress generated by reactive oxygen species (ROS) during its survival inside host macrophages. But, the involvement of any antigenic protein(s) for countering such redox stress is still unknown. Interestingly, M. leprae HSP18, an important antigenic protein that helps in the growth and survival of M. leprae pathogen inside host macrophages, is induced under redox stress. Moreover, HSP18 also interacts with Cu2+. Copper (II) can induce redox stress via Fenton reaction. But, whether HSP18 suppresses Cu2+ mediated ROS generation, is still far from clear. Also, the effect of redox stress on its structure and function is not known. In this study, we show that HSP18 efficiently suppresses Cu2+ mediated generation of ROS and also prevents the redox mediated aggregation of a client protein (γD-crystallin). Upon exposure to substantial redox stress, irreversible perturbation in the secondary and tertiary structure of HSP18 and the tryptophan and tyrosine oxidation are evidenced. Interestingly, HSP18 retains a considerable amount of functionality even after being exposed to substantial redox stress. Perhaps, the redox scavenging ability as well as the chaperone function of HSP18 may possibly help M. leprae pathogen to counter redox stress inside host macrophages.


Subject(s)
Bacterial Proteins/metabolism , Copper/metabolism , Heat-Shock Proteins/metabolism , Mycobacterium leprae/metabolism , Reactive Oxygen Species/metabolism , Ascorbic Acid/metabolism , Bacterial Proteins/genetics , Bacterial Proteins/pharmacology , Heat-Shock Proteins/genetics , Heat-Shock Proteins/pharmacology , Hydrogen Peroxide/metabolism , Hydroxyl Radical/metabolism , Macrophages/microbiology , Molecular Chaperones/metabolism , Mycobacterium leprae/genetics , Oxidation-Reduction/drug effects , Recombinant Proteins , Tyrosine/metabolism
5.
Biosens Bioelectron ; 143: 111625, 2019 Oct 15.
Article in English | MEDLINE | ID: mdl-31476595

ABSTRACT

The first serum diagnosis of leprosy based on the detection of antibodies of patients using a recombinant mimetic peptide (PGL1M3R) as recognition element and exploiting a photoelectrochemical sensor is presented in this work. The photoeletrochemical platform consists of cadmium sulphide and nickel hydroxide electrodeposited on fluorine-doped tin oxide coated glass slide (CdS/Ni(OH)2/FTO). The optical band gap and flat band potential of the photoelectroactive materials were evaluated by UV-Vis spectroscopy and electrochemical impedance spectroscopy. The spatial photoelectrochemical response of the platform was evaluated by Scanning Electrochemical Microscopy and the morphology of the films was investigated by Scanning Electron Microscopy (SEM). The photoelectrochemical response of the CdS/Ni(OH)2/FTO platform was optimized by evaluating the effects of the kind, concentration, and pH of the buffer. Furthermore, the applied potential to the CdS/Ni(OH)2/FTO platform was also investigated. The CdS/Ni(OH)2/FTO photoelectrochemical platform was modified with a synthetic peptide by using glutaraldehyde as cross-linking reagent and chitosan (CS) for the covalent coupling of the peptide to the photoelectrochemical platform (PGL1M3R/CdS/Ni(OH)2/FTO). The photoelectrochemical immunosensor is able to distinguishing between positive and negative leprosy human sera samples diluted from 1:640 up to 1:10240. Furthermore, to test the specificity of the sensor, samples from tuberculosis and leishmaniasis patients were analyzed using the proposed photoelectrochemical immunosensor.


Subject(s)
Antigens, Bacterial/isolation & purification , Biosensing Techniques , Leprosy/diagnosis , Mycobacterium leprae/isolation & purification , Biomimetics , Humans , Leprosy/microbiology , Mycobacterium leprae/pathogenicity , Recombinant Proteins/chemistry
6.
J Dermatol ; 46(10): 853-858, 2019 Oct.
Article in English | MEDLINE | ID: mdl-31432529

ABSTRACT

In patients with lepromatous leprosy, Mycobacterium leprae is often observed inside the human microvascular endothelial cells (HMVEC) surrounding Schwann cells (SC) at the site of lesions in the peripheral nerves. Based on this observation, it is considered that the nasal mucous may be the invasion pathway for M. leprae and HMVEC serve as an important reservoir for the bacteria before they invade SC. In light of previous research which revealed that Mce1A protein mediates bacterial invasion into nasal epithelial cells and HMVEC, we conducted a study to determine whether the invasion of M. leprae into HMVEC can be suppressed by blocking the Mce1A protein. In this study, we analyzed bacterial invasive activity by adding recombinant Escherichia coli, which express the active region (InvX:72 a.a.) of Mce1A protein on their external membrane, into cultured HMVEC, using the adhesin involved in the diffuse adherence mechanism. The number of bacteria that invaded into the cells was then measured by a colony counting method. The active region of Mce1A was divided into four sections, and hyperimmune antisera was prepared for each section for analyzing the inhibitory effect against invasion. The invasive activity was suppressed by antibodies against InvX regions 1-24 a.a., 25-46 a.a. and 58-72 a.a. This suggests that the InvX regions 1-24 a.a., 25-46 a.a. and 58-72 a.a. of Mce1A protein play an important role in the invasion of M. leprae into HMVEC and that it may be possible to suppress entry of M. leprae in HMVEC with antibodies against these regions.


Subject(s)
Antibodies, Bacterial/immunology , Bacterial Proteins/immunology , Endothelial Cells/microbiology , Leprosy/immunology , Mycobacterium leprae/immunology , Animals , Antibodies, Bacterial/isolation & purification , Bacterial Proteins/genetics , Cell Line , Colony Count, Microbial , Humans , Immune Sera/immunology , Immune Sera/isolation & purification , Leprosy/microbiology , Leprosy/prevention & control , Mycobacterium leprae/pathogenicity , Rabbits , Recombinant Proteins/genetics , Recombinant Proteins/immunology
7.
J Clin Invest ; 129(5): 1926-1939, 2019 04 02.
Article in English | MEDLINE | ID: mdl-30939123

ABSTRACT

IL-26 is an antimicrobial protein secreted by Th17 cells that has the ability to directly kill extracellular bacteria. To ascertain whether IL-26 contributes to host defense against intracellular bacteria, we studied leprosy, caused by the obligate intracellular pathogen Mycobacterium leprae, as a model. Analysis of leprosy skin lesions by gene expression profiling and immunohistology revealed that IL-26 was more strongly expressed in lesions from the self-limited tuberculoid compared with expression in progressive lepromatous patients. IL-26 directly bound to M. leprae in axenic culture and reduced bacteria viability. Furthermore, IL-26, when added to human monocyte-derived macrophages infected with M. leprae, entered the infected cell, colocalized with the bacterium, and reduced bacteria viability. In addition, IL-26 induced autophagy via the cytoplasmic DNA receptor stimulator of IFN genes (STING), as well as fusion of phagosomes containing bacilli with lysosomal compartments. Altogether, our data suggest that the Th17 cytokine IL-26 contributes to host defense against intracellular bacteria.


Subject(s)
Interleukins/immunology , Leprosy, Lepromatous/microbiology , Leprosy, Tuberculoid/microbiology , Th17 Cells/immunology , Autophagy , Cytokines/immunology , Gene Expression Profiling , Humans , Lysosomes/immunology , Lysosomes/microbiology , Macrophages/immunology , Monocytes/cytology , Mycobacterium leprae , Mycobacterium tuberculosis , Phagosomes/immunology , Recombinant Proteins/immunology , Signal Transduction
8.
JCI Insight ; 4(8)2019 04 18.
Article in English | MEDLINE | ID: mdl-30996142

ABSTRACT

DC, through the uptake, processing, and presentation of antigen, are responsible for activation of T cell responses to defend the host against infection, yet it is not known if they can directly kill invading bacteria. Here, we studied in human leprosy, how Langerhans cells (LC), specialized DC, contribute to host defense against bacterial infection. IFN-γ treatment of LC isolated from human epidermis and infected with Mycobacterium leprae (M. leprae) activated an antimicrobial activity, which was dependent on the upregulation of the antimicrobial peptide cathelicidin and induction of autophagy. IFN-γ induction of autophagy promoted fusion of phagosomes containing M. leprae with lysosomes and the delivery of cathelicidin to the intracellular compartment containing the pathogen. Autophagy enhanced the ability of M. leprae-infected LC to present antigen to CD1a-restricted T cells. The frequency of IFN-γ labeling and LC containing both cathelicidin and autophagic vesicles was greater in the self-healing lesions vs. progressive lesions, thus correlating with the effectiveness of host defense against the pathogen. These data indicate that autophagy links the ability of DC to kill and degrade an invading pathogen, ensuring cell survival from the infection while facilitating presentation of microbial antigens to resident T cells.


Subject(s)
Antigen Presentation , Autophagy , Langerhans Cells/immunology , Leprosy/immunology , Mycobacterium leprae/immunology , Antigens, Bacterial/immunology , Antimicrobial Cationic Peptides/immunology , Antimicrobial Cationic Peptides/metabolism , Autophagosomes/immunology , Autophagosomes/metabolism , Autophagosomes/microbiology , Biopsy , Cells, Cultured , Epidermis/immunology , Epidermis/microbiology , Epidermis/pathology , Humans , Interferon-gamma/immunology , Langerhans Cells/microbiology , Langerhans Cells/ultrastructure , Leprosy/microbiology , Leprosy/pathology , Lysosomes/immunology , Lysosomes/metabolism , Lysosomes/microbiology , Microscopy, Electron, Transmission , Mycobacterium leprae/isolation & purification , Primary Cell Culture , Recombinant Proteins/immunology , T-Lymphocytes/immunology , Up-Regulation/immunology , Cathelicidins
9.
PLoS Negl Trop Dis ; 13(3): e0006704, 2019 03.
Article in English | MEDLINE | ID: mdl-30835734

ABSTRACT

Leprosy is a chronic infection where the skin and peripheral nervous system is invaded by Mycobacterium leprae. The infection mechanism remains unknown in part because culture methods have not been established yet for M. leprae. Mce1A protein (442 aa) is coded by mce1A (1326 bp) of M. leprae. The Mce1A homolog in Mycobacterium tuberculosis is known to be associated with M. tuberculosis epithelial cell entry, and survival and multiplication within macrophages. Studies using recombinant proteins have indicated that Mce1A of M. leprae is also associated with epithelial cell entry. This study is aimed at identifying particular sequences within Mce1A associated with M. leprae epithelial cell entry. Recombinant proteins having N-terminus and C-terminus truncations of the Mce1A region of M. leprae were created in Escherichia coli. Entry activity of latex beads, coated with these truncated proteins (r-lep37 kDa and r-lep27 kDa), into HeLa cells was observed by electron microscopy. The entry activity was preserved even when 315 bp (105 aa) and 922 bp (308 aa) was truncated from the N-terminus and C-terminus, respectively. This 316-921 bp region was divided into three sub-regions: 316-531 bp (InvX), 532-753 bp (InvY), and 754-921 bp (InvZ). Each sub-region was cloned into an AIDA vector and expressed on the surface of E. coli. Entry of these E. coli into monolayer-cultured HeLa and RPMI2650 cells was observed by electron microscopy. Only E. coli harboring the InvX sub-region exhibited cell entry. InvX was further divided into 4 domains, InvXa-InvXd, containing sequences 1-24 aa, 25-46 aa, 47-57 aa, and 58-72 aa, respectively. Recombinant E. coli, expressing each of InvXa-InvXd on the surface, were treated with antibodies against these domains, then added to monolayer cultured RPMI cells. The effectiveness of these antibodies in preventing cell entry was studied by colony counting. Entry activity was suppressed by antibodies against InvXa, InvXb, and InvXd. This suggests that these three InvX domains of Mce1A are important for M. leprae invasion into nasal epithelial cells.


Subject(s)
Bacterial Proteins/metabolism , Leprosy/microbiology , Mycobacterium leprae/pathogenicity , Nasal Septum/microbiology , Bacterial Proteins/genetics , Cell Line , Colony Count, Microbial , DNA, Bacterial/genetics , Escherichia coli/genetics , Genetic Vectors/genetics , HeLa Cells , Humans , Microspheres , Mycobacterium leprae/genetics , Mycobacterium leprae/growth & development , Recombinant Proteins/genetics , Recombinant Proteins/metabolism
10.
Int J Med Microbiol ; 308(8): 1000-1008, 2018 Dec.
Article in English | MEDLINE | ID: mdl-30190103

ABSTRACT

Utility of Mycobacterium indicus pranii (MIP) as a multistage vaccine against mycobacterial infections demands identification of its protective antigens. We explored antigenicity and immunogenicity of a candidate protein MIP_05962 that depicts homology to HSP18 of M. leprae and antigen1 of Mycobacterium tuberculosis. This protein elicited substantial antibody response in immunized mice along with modulation of cellular immune response towards protective Th1 type. Both CD4+ and CD8+ subsets from immunized mice produced hallmark protective cytokines, IFN-γ, TNF-α and IL-2. This protein also enhanced the CD4+ effector memory that could act as first line of defence during infections. These results point to MIP_05962 as a protective antigen that contributes, in conjunction with others, to the protective immunity of this live vaccine candidate.


Subject(s)
Bacterial Proteins/immunology , DNA, Bacterial/immunology , Mycobacterium avium Complex/immunology , Mycobacterium avium-intracellulare Infection/immunology , Th1 Cells/immunology , Animals , Bacterial Proteins/genetics , Cytokines/immunology , Cytokines/metabolism , DNA, Bacterial/genetics , Humans , Immunity, Cellular/immunology , Immunity, Humoral/immunology , Immunization , Mice , Mice, Inbred BALB C , Mycobacterium avium Complex/genetics , Mycobacterium avium-intracellulare Infection/microbiology , Primary Cell Culture , Recombinant Proteins/genetics , Recombinant Proteins/immunology , Th1 Cells/metabolism , Tuberculosis Vaccines/immunology
11.
Enzyme Microb Technol ; 112: 79-87, 2018 May.
Article in English | MEDLINE | ID: mdl-29499785

ABSTRACT

Geranyl glucoside, the glucosylated, high-value derivative of the monoterpenoid geraniol, has various applications in the flavor and fragrance industry and can be produced through whole-cell biotransformation of geraniol with Escherichia coli whole-cell biocatalysts expressing the glucosyltransferase VvGT14a. However, the low water solubility and high cytotoxicity of geraniol require the design of a proper biphasic system where the second, non-aqueous phase functions as an in-situ substrate reservoir. In this work, a rational selection strategy was applied for choosing suitable sequestering phases for geranyl glucoside production by whole-cell biotransformation of geraniol. Hansen solubility parameters and octanol/water distribution coefficients were used as first principle methods in combination with extensive database research to preselect 12 liquid and 6 solid sequestering phases. Subsequently, experimental approaches were applied to determine physicochemical characteristics and the distribution of geraniol and geranyl glucoside between the phases. Moreover, the effects of the sequestering phases on the whole-cell biocatalysts and on the produced geranyl glucoside concentration were measured during parallel biotransformations in milliliter-scale stirred-tank bioreactors. The fatty acid ester isopropyl myristate emerged as the best choice due to its low viscosity, very poor water solubility, low price and compatibility with the whole-cell biocatalyst. The biphasic system containing 20% (v/v) of this solvent boosted geranyl glucoside production (4.2-fold increase of geranyl glucoside concentration in comparison to aqueous system) and exhibits advantageous partitioning of geraniol into the organic phase (logD of 2.42±0.03) and of geranyl glucoside into the water phase (logD of -2.08±0.05). The systematic selection of a suitable biphasic system constitutes basic groundwork for the development of new bioprocesses involving geraniol. Moreover, this study can serve as a guideline for selecting sequestering phases for other whole-cell biotransformation processes.


Subject(s)
Escherichia coli/metabolism , Glucosides/biosynthesis , Acyclic Monoterpenes , Biocatalysis , Bioreactors/microbiology , Biotechnology , Biotransformation , Escherichia coli/genetics , Glucosyltransferases/genetics , Glucosyltransferases/metabolism , Industrial Microbiology , Liquid-Liquid Extraction , Myristates , Plant Proteins/genetics , Plant Proteins/metabolism , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Solid Phase Extraction , Solubility , Solvents , Terpenes/metabolism , Vitis/enzymology , Vitis/genetics
12.
Front Immunol ; 9: 2920, 2018.
Article in English | MEDLINE | ID: mdl-30631322

ABSTRACT

Leprosy is a chronic disease caused by M. leprae infection that can cause severe neurological complications and physical disabilities. A leprosy-specific vaccine would be an important component within control programs but is still lacking. Given that multifunctional CD4 T cells [i.e., those capable of simultaneously secreting combinations of interferon (IFN)-γ, interleukin (IL)-2, and tumor necrosis factor (TNF)] have now been implicated in the protective response to several infections, we tested the hypothesis if a recombinant M. leprae antigen-specific multifunctional T cells differed between leprosy patients and their healthy contacts. We used whole blood assays and peripheral blood mononuclear cells to characterize the antigen-specific T cell responses of 39 paucibacillary (PB) and 17 multibacillary (MB) leprosy patients and 31 healthy household contacts (HHC). Cells were incubated with either crude mycobacterial extracts (M. leprae cell sonicate-MLCS) and purified protein derivative (PPD) or recombinant ML2028 protein, the homolog of M. tuberculosis Ag85B. Multiplex assay revealed antigen-specific production of IFN-γ and IL-2 from cells of HHC and PB, confirming a Th1 bias within these individuals. Multiparameter flow cytometry then revealed that the population of multifunctional ML2028-specific T cells observed in HHC was larger than that observed in PB patients. Taken together, our data suggest that these multifunctional antigen-specific T cells provide a more effective response against M. leprae infection that prevents the development of leprosy. These data further our understanding of M. leprae infection/leprosy and are instructive for vaccine development.


Subject(s)
Antigens, Bacterial/immunology , CD4-Positive T-Lymphocytes/immunology , Leprosy, Multibacillary/immunology , Leprosy, Paucibacillary/immunology , Mycobacterium leprae/immunology , Vaccines/immunology , Adult , Aged , Antigens, Bacterial/genetics , CD4-Positive T-Lymphocytes/metabolism , CD4-Positive T-Lymphocytes/microbiology , Female , Humans , Interferon-gamma/immunology , Interferon-gamma/metabolism , Interleukin-2/immunology , Interleukin-2/metabolism , Leprosy, Multibacillary/microbiology , Leprosy, Multibacillary/prevention & control , Leprosy, Paucibacillary/microbiology , Leprosy, Paucibacillary/prevention & control , Male , Middle Aged , Mycobacterium leprae/physiology , Recombinant Proteins/immunology , Th1 Cells/immunology , Th1 Cells/metabolism , Vaccines/therapeutic use , Young Adult
13.
Biosci Biotechnol Biochem ; 81(7): 1343-1347, 2017 Jul.
Article in English | MEDLINE | ID: mdl-28417702

ABSTRACT

Quinolones are important antimicrobials for treatment of leprosy, a chronic infectious disease caused by Mycobacterium leprae. Although it is well known that mutations in DNA gyrase are responsible for quinolone resistance, the effect of those mutations on the enzymatic activity is yet to be studied in depth. Hence, we conducted in vitro assays to observe supercoiling reactions of wild type and mutated M. leprae DNA gyrases. DNA gyrase with amino acid substitution Ala91Val possessed the highest activity among the mutants. DNA gyrase with Gly89Cys showed the lowest level of activity despite being found in clinical strains, but it supercoiled DNA like the wild type does if applied at a sufficient concentration. In addition, patterns of time-dependent conversion from relaxed circular DNA into supercoiled DNA by DNA gyrases with clinically unreported Asp95Gly and Asp95Asn were observed to be distinct from those by the other DNA gyrases.


Subject(s)
Amino Acid Substitution , Anti-Bacterial Agents/pharmacology , DNA Gyrase/chemistry , Mutation , Mycobacterium leprae/drug effects , Quinolones/pharmacology , Cloning, Molecular , DNA Gyrase/genetics , DNA Gyrase/metabolism , DNA, Bacterial/chemistry , DNA, Bacterial/metabolism , DNA, Circular/chemistry , DNA, Circular/metabolism , DNA, Superhelical/chemistry , DNA, Superhelical/metabolism , Drug Resistance, Bacterial , Enzyme Assays , Escherichia coli/genetics , Escherichia coli/metabolism , Gene Expression , Kinetics , Mycobacterium leprae/genetics , Mycobacterium leprae/metabolism , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Structure-Activity Relationship
14.
Biochemistry ; 56(14): 2051-2060, 2017 04 11.
Article in English | MEDLINE | ID: mdl-28345882

ABSTRACT

Protein tyrosine phosphatase 1B (PTP1B) is a validated drug target, but it has proven difficult to develop medicinally useful, reversible inhibitors of this enzyme. Here we explored covalent strategies for the inactivation of PTP1B using a conjugate composed of an active site-directed 5-aryl-1,2,5-thiadiazolidin-3-one 1,1-dioxide inhibitor connected via a short linker to an electrophilic α-bromoacetamide moiety. Inhibitor-electrophile conjugate 5a caused time-dependent loss of PTP1B activity consistent with a covalent inactivation mechanism. The inactivation occurred with a second-order rate constant of (1.7 ± 0.3) × 102 M-1 min-1. Mass spectrometric analysis of the inactivated enzyme indicated that the primary site of modification was C121, a residue distant from the active site. Previous work provided evidence that covalent modification of the allosteric residue C121 can cause inactivation of PTP1B [Hansen, S. K., Cancilla, M. T., Shiau, T. P., Kung, J., Chen, T., and Erlanson, D. A. (2005) Biochemistry 44, 7704-7712]. Overall, our results are consistent with an unusual enzyme inactivation process in which noncovalent binding of the inhibitor-electrophile conjugate to the active site of PTP1B protects the nucleophilic catalytic C215 residue from covalent modification, thus allowing inactivation of the enzyme via selective modification of allosteric residue C121.


Subject(s)
Cyclic S-Oxides/chemistry , Enzyme Inhibitors/chemistry , Protein Tyrosine Phosphatase, Non-Receptor Type 1/antagonists & inhibitors , Thiazoles/chemistry , Allosteric Regulation , Allosteric Site , Binding Sites , Crystallography, X-Ray , Cyclic S-Oxides/chemical synthesis , Enzyme Inhibitors/chemical synthesis , Escherichia coli/genetics , Escherichia coli/metabolism , Gene Expression , Humans , Kinetics , Mutation , Protein Binding , Protein Tyrosine Phosphatase, Non-Receptor Type 1/genetics , Protein Tyrosine Phosphatase, Non-Receptor Type 1/metabolism , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Structure-Activity Relationship , Thermodynamics , Thiazoles/chemical synthesis
15.
Hum Vaccin Immunother ; 13(5): 1040-1050, 2017 05 04.
Article in English | MEDLINE | ID: mdl-28059670

ABSTRACT

Previously we showed that 65-kDa Mycobacterium leprae heat shock protein (Hsp65) is a target for the development of a tuberculosis vaccine. Here we evaluated peripheral blood mononuclear cells (PBMC) from healthy individuals or tuberculosis patients stimulated with two forms of Hsp65 antigen, recombinant DNA that encodes Hsp65 (DNA-HSP65) or recombinant Hsp65 protein (rHsp65) in attempting to mimic a prophylactic or therapeutic study in vitro, respectively. Proliferation and cytokine-producing CD4+ or CD8+ cell were assessed by flow cytometry. The CD4+ cell proliferation from healthy individuals was stimulated by DNA-HSP65 and rHsp65, while CD8+ cell proliferation from healthy individuals or tuberculosis patients was stimulated by rHSP65. DNA-HSP65 did not improve the frequency of IFN-gamma+ cells from healthy individuals or tuberculosis patients. Furthermore, we found an increase in the frequency of IL-10-producing cells in both groups. These findings show that Hsp65 antigen activates human lymphocytes and plays an immune regulatory role that should be addressed as an additional antigen for the development of antigen-combined therapies.


Subject(s)
Bacterial Proteins/immunology , Chaperonin 60/immunology , Immunity, Cellular , Lymphocyte Activation , Tuberculosis/immunology , Adult , Bacterial Proteins/genetics , CD4-Positive T-Lymphocytes/immunology , CD8-Positive T-Lymphocytes/immunology , Chaperonin 60/genetics , Cytotoxicity, Immunologic , Female , Healthy Volunteers , Humans , Interferon-gamma/biosynthesis , Interferon-gamma/immunology , Interleukin-10/biosynthesis , Interleukin-10/immunology , Leukocytes, Mononuclear/immunology , Macrophages, Alveolar/immunology , Male , Middle Aged , Mycobacterium tuberculosis/immunology , Recombinant Proteins/immunology , Tuberculosis Vaccines/immunology , Up-Regulation , Vaccines, DNA/pharmacology , Young Adult
16.
Diagn Microbiol Infect Dis ; 87(4): 328-334, 2017 Apr.
Article in English | MEDLINE | ID: mdl-28126361

ABSTRACT

To advance toward a whole blood assay (WBA)-based test capable of facilitating the diagnosis of paucibacillary (PB) leprosy, we evaluated a prototype in-tube WBA using combinations of Mycobacterium leprae antigens. Blood was collected from newly diagnosed untreated PB (n=38), multibacillary (MB) (n=30), healthy household contacts (HHC) of MB (n=27), and endemic controls (n=61) residing in Goiânia and Fortaleza, Brazil. Blood was incubated with M. leprae cell sonicate, recombinant proteins (46f+LID-1; ML0276+LID-1), or controls (phosphate-buffered saline, phytohemagglutinin, M. tuberculosis purified protein derivative). Antigen-specific IFNγ production was observed in 71-84% and 55% of PB and HHC, respectively. Antigen-specific CXCL10 levels were similarly assessed to determine if, unlike IFNγ, CXCL10 could differentiate PB from HHC with repeated exposure/asymptomatic M. leprae infection. The CXCL10 levels induced in response to M. leprae antigens could not, however, differentiate PB from HHC. Despite these limitations, the WBAs reported here still represent important tools for assessing M. leprae infection rates and evaluating the impact of control measures.


Subject(s)
Antigens, Bacterial/immunology , Asymptomatic Infections/epidemiology , Chemokine CXCL10/immunology , Interferon-gamma/immunology , Leprosy, Paucibacillary/immunology , Leprosy, Paucibacillary/microbiology , Mycobacterium leprae/immunology , Adolescent , Adult , Aged , Aged, 80 and over , Antibodies, Bacterial/immunology , Biological Assay/methods , Brazil , Female , Humans , Leprosy, Paucibacillary/blood , Leprosy, Paucibacillary/diagnosis , Male , Middle Aged , Mycobacterium tuberculosis/immunology , Recombinant Proteins/immunology , Young Adult
17.
FEMS Yeast Res ; 17(1)2017 01 01.
Article in English | MEDLINE | ID: mdl-27856503

ABSTRACT

The transcription factor ScRpn4 coordinates the expression of Saccharomyces cerevisiae proteasomal genes. ScRpn4 orthologues are found in a number of other Saccharomycetes yeasts. Their functions, however, have not yet been characterised experimentally in vivo . We expressed the Debaryomyces hansenii DEHA2D12848 gene encoding an ScRpn4 orthologue (DhRpn4), in an S. cerevisiae strain lacking RPN4 . We showed that DhRpn4 activates transcription of proteasomal genes using ScRpn4 binding site and provides resistance to various stresses. The 43-238 aa segment of DhRpn4 contains an unique portable transactivation domain. Similar to the ScRpn4 N-terminus, this domain lacks a compact structure Moreover, upon overexpression in D. hansenii , DhRpn4 upregulates protesomal genes. Thus, we show that DhRpn4 is the activator for proteasomal genes.


Subject(s)
Gene Expression Regulation, Fungal , Proteasome Endopeptidase Complex/metabolism , Saccharomyces cerevisiae/enzymology , Saccharomycetales/enzymology , Transcription Factors/metabolism , Proteasome Endopeptidase Complex/genetics , Protein Conformation , Protein Domains , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Saccharomyces cerevisiae/genetics , Saccharomycetales/genetics , Transcription Factors/chemistry , Transcription Factors/genetics
18.
Nucleic Acids Res ; 45(1): 1-14, 2017 01 09.
Article in English | MEDLINE | ID: mdl-27899559

ABSTRACT

RNase H enzymes sense the presence of ribonucleotides in the genome and initiate their removal by incising the ribonucleotide-containing strand of an RNA:DNA hybrid. Mycobacterium smegmatis encodes four RNase H enzymes: RnhA, RnhB, RnhC and RnhD. Here, we interrogate the biochemical activity and nucleic acid substrate specificity of RnhA. We report that RnhA (like RnhC characterized previously) is an RNase H1-type magnesium-dependent endonuclease with stringent specificity for RNA:DNA hybrid duplexes. Whereas RnhA does not incise an embedded mono-ribonucleotide, it can efficiently cleave within tracts of four or more ribonucleotides in duplex DNA. We gained genetic insights to the division of labor among mycobacterial RNases H by deleting the rnhA, rnhB, rnhC and rnhD genes, individually and in various combinations. The salient conclusions are that: (i) RNase H1 activity is essential for mycobacterial growth and can be provided by either RnhC or RnhA; (ii) the RNase H2 enzymes RnhB and RnhD are dispensable for growth and (iii) RnhB and RnhA collaborate to protect M. smegmatis against oxidative damage in stationary phase. Our findings highlight RnhC, the sole RNase H1 in pathogenic mycobacteria, as a candidate drug discovery target for tuberculosis and leprosy.


Subject(s)
Bacterial Proteins/genetics , Gene Expression Regulation, Bacterial , Genome, Bacterial , Hydrogen Peroxide/pharmacology , Mycobacterium smegmatis/drug effects , Ribonuclease H/genetics , Amino Acid Sequence , Bacterial Proteins/metabolism , Base Sequence , Cloning, Molecular , DNA, Bacterial/genetics , DNA, Bacterial/metabolism , Escherichia coli/genetics , Escherichia coli/metabolism , Isoenzymes/genetics , Isoenzymes/metabolism , Mycobacterium smegmatis/genetics , Mycobacterium smegmatis/growth & development , Mycobacterium smegmatis/metabolism , RNA, Bacterial/genetics , RNA, Bacterial/metabolism , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Ribonuclease H/metabolism , Ribonucleotides/genetics , Ribonucleotides/metabolism , Sequence Alignment , Substrate Specificity
19.
Int Immunol ; 28(9): 435-41, 2016 09.
Article in English | MEDLINE | ID: mdl-26921215

ABSTRACT

BACKGROUND: Immunological characterization of mycobacterial peptides may help not only in the preparation of a vaccine for leprosy but also in developing in vitro T-cell assays that could perhaps be used as an in vitro correlate for treatment outcome. The main goal of this study was to evaluate the use of Mycobacterium bovis recombinant 32-kDa protein (r32-kDa) antigen-stimulated T-cell assay as a surrogate marker for treatment outcome and monitor vitamin D receptor (VDR)-mediated anti-microbial responses during multidrug therapy (MDT) in leprosy. METHODS: Newly diagnosed tuberculoid and lepromatous leprosy patients were enrolled and followed up during their course of MDT at 6 and 12 months. IFN-γ, IL-10, IL-17 and IL-23 levels in culture supernatants and expression of VDR, TLR2, LL37 and DEFB in r32-kDa-stimulated PBMCs were measured. Controls comprised household contacts (HHCs) and healthy endemic subjects (HCs). RESULTS: Significant differences were observed in the levels of IFN-γ, IL-17, IL-23, VDR and anti-microbial peptides LL37 and DEFB after treatment and when compared with that of HHCs and HCs, respectively. CONCLUSIONS: These findings suggest that responses to r32-kDa antigen reflect an improved immunological and anti-microbial response in leprosy patients during therapy, thereby indicating its potential use as an immune correlate in the treatment of leprosy patients.


Subject(s)
Antigens, Bacterial/pharmacology , Bacterial Proteins/pharmacology , Cytokines/immunology , Leprosy/immunology , Mycobacterium bovis , T-Lymphocytes/immunology , Antigens, Bacterial/genetics , Antigens, Bacterial/immunology , Antimicrobial Cationic Peptides , Bacterial Proteins/genetics , Bacterial Proteins/immunology , Cathelicidins/immunology , Female , Follow-Up Studies , Gene Expression Regulation/drug effects , Gene Expression Regulation/immunology , Humans , Leprosy/pathology , Male , Recombinant Proteins/genetics , Recombinant Proteins/immunology , Recombinant Proteins/pharmacology , T-Lymphocytes/pathology , Toll-Like Receptor 2/immunology
20.
FEMS Yeast Res ; 15(8)2015 Dec.
Article in English | MEDLINE | ID: mdl-26500234

ABSTRACT

We have functionally characterized the four Saccharomyces cerevisiae (Sc) Jen1 homologues of Debaryomyces hansenii (Dh) by heterologous expression in S. cerevisiae. Debaryomyces hansenii cells display mediated transport for the uptake of lactate, acetate, succinate and malate. DHJEN genes expression was detected by RT-PCR in all carbon sources assayed, namely lactate, succinate, citrate, glycerol and glucose. The heterologous expression in the S. cerevisiae W303-1A jen1Δ ady2Δ strain demonstrated that the D. hansenii JEN genes encode four carboxylate transporters. DH27 gene encodes an acetate transporter (Km 0.94 ± 0.17 mM; Vmax 0.43 ± 0.03 nmol s(-1) mg(-1)), DH17 encodes a malate transporter (Km 0.27 ± 0.04 mM; Vmax 0.11 ± 0.01 nmol s(-1) mg(-1)) and both DH18 and DH24 encode succinate transporters with the following kinetic parameters, respectively, Km 0.31 ± 0.06 mM; Vmax 0.83 ± 0.04 nmol s(-1) mg(-1)and Km 0.16 ± 0.02 mM; Vmax 0.19 ± 0.02 nmol s(-1) mg(-1). Surprisingly, no lactate transporter was found, although D. hansenii presents a mediated transport for this acid. This work advanced the current knowledge on yeast carboxylate transporters by characterizing four new plasma membrane transporters in D. hansenii.


Subject(s)
Monocarboxylic Acid Transporters/genetics , Monocarboxylic Acid Transporters/metabolism , Saccharomycetales/genetics , Saccharomycetales/metabolism , Biological Transport , Carboxylic Acids/metabolism , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Substrate Specificity
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