Search details
1.
Structure and function of the global topsoil microbiome.
Nature
; 560(7717): 233-237, 2018 08.
Article
in English
| MEDLINE | ID: mdl-30069051
2.
CAFE: a software suite for analysis of paired-sample transposon insertion sequencing data.
Bioinformatics
; 37(1): 121-122, 2021 Apr 09.
Article
in English
| MEDLINE | ID: mdl-33393985
3.
What Is the Role of the Environment in the Emergence of Novel Antibiotic Resistance Genes? A Modeling Approach.
Environ Sci Technol
; 55(23): 15734-15743, 2021 12 07.
Article
in English
| MEDLINE | ID: mdl-34792330
4.
The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications.
Nucleic Acids Res
; 47(D1): D259-D264, 2019 01 08.
Article
in English
| MEDLINE | ID: mdl-30371820
5.
Metaxa2 Database Builder: enabling taxonomic identification from metagenomic or metabarcoding data using any genetic marker.
Bioinformatics
; 34(23): 4027-4033, 2018 12 01.
Article
in English
| MEDLINE | ID: mdl-29912385
6.
In Vivo Analysis of the Viable Microbiota and Helicobacter pylori Transcriptome in Gastric Infection and Early Stages of Carcinogenesis.
Infect Immun
; 85(10)2017 10.
Article
in English
| MEDLINE | ID: mdl-28694295
7.
Computational discovery and functional validation of novel fluoroquinolone resistance genes in public metagenomic data sets.
BMC Genomics
; 18(1): 682, 2017 Sep 02.
Article
in English
| MEDLINE | ID: mdl-28865446
8.
Using metagenomics to investigate human and environmental resistomes.
J Antimicrob Chemother
; 72(10): 2690-2703, 2017 10 01.
Article
in English
| MEDLINE | ID: mdl-28673041
9.
FARAO: the flexible all-round annotation organizer.
Bioinformatics
; 32(23): 3664-3666, 2016 12 01.
Article
in English
| MEDLINE | ID: mdl-27493193
10.
The relation between Blastocystis and the intestinal microbiota in Swedish travellers.
BMC Microbiol
; 17(1): 231, 2017 Dec 11.
Article
in English
| MEDLINE | ID: mdl-29228901
11.
Strategies to improve usability and preserve accuracy in biological sequence databases.
Proteomics
; 16(18): 2454-60, 2016 09.
Article
in English
| MEDLINE | ID: mdl-27528420
12.
BacMet: antibacterial biocide and metal resistance genes database.
Nucleic Acids Res
; 42(Database issue): D737-43, 2014 Jan.
Article
in English
| MEDLINE | ID: mdl-24304895
13.
Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential.
BMC Genomics
; 16: 964, 2015 Nov 17.
Article
in English
| MEDLINE | ID: mdl-26576951
14.
The Human Gut Microbiome as a Transporter of Antibiotic Resistance Genes between Continents.
Antimicrob Agents Chemother
; 59(10): 6551-60, 2015 Oct.
Article
in English
| MEDLINE | ID: mdl-26259788
15.
Metagenomics reveals that detoxification systems are underrepresented in marine bacterial communities.
BMC Genomics
; 15: 749, 2014 Sep 01.
Article
in English
| MEDLINE | ID: mdl-25179155
16.
Low coverage of species constrains the use of DNA barcoding to assess mosquito biodiversity.
Sci Rep
; 14(1): 7432, 2024 03 28.
Article
in English
| MEDLINE | ID: mdl-38548880
17.
Aberrant microbiomes are associated with increased antibiotic resistance gene load in hybrid mice.
ISME Commun
; 4(1): ycae053, 2024 Jan.
Article
in English
| MEDLINE | ID: mdl-38800129
18.
Towards a unified paradigm for sequence-based identification of fungi.
Mol Ecol
; 22(21): 5271-7, 2013 Nov.
Article
in English
| MEDLINE | ID: mdl-24112409
19.
A global baseline for qPCR-determined antimicrobial resistance gene prevalence across environments.
Environ Int
; 178: 108084, 2023 08.
Article
in English
| MEDLINE | ID: mdl-37421899
20.
Latent antibiotic resistance genes are abundant, diverse, and mobile in human, animal, and environmental microbiomes.
Microbiome
; 11(1): 44, 2023 03 08.
Article
in English
| MEDLINE | ID: mdl-36882798