Search details
1.
Structured Prompt Interrogation and Recursive Extraction of Semantics (SPIRES): a method for populating knowledge bases using zero-shot learning.
Bioinformatics
; 40(3)2024 Mar 04.
Article
in English
| MEDLINE | ID: mdl-38383067
2.
KG-Hub-building and exchanging biological knowledge graphs.
Bioinformatics
; 39(7)2023 07 01.
Article
in English
| MEDLINE | ID: mdl-37389415
3.
Developing a Knowledge Graph for Pharmacokinetic Natural Product-Drug Interactions.
J Biomed Inform
; 140: 104341, 2023 04.
Article
in English
| MEDLINE | ID: mdl-36933632
4.
A bacterial sensor taxonomy across earth ecosystems for machine learning applications.
mSystems
; 9(1): e0002623, 2024 Jan 23.
Article
in English
| MEDLINE | ID: mdl-38078749
5.
Integrating biological knowledge for mechanistic inference in the host-associated microbiome.
Front Microbiol
; 15: 1351678, 2024.
Article
in English
| MEDLINE | ID: mdl-38638909
6.
Estimating geographic variation of infection fatality ratios during epidemics.
Infect Dis Model
; 9(2): 634-643, 2024 Jun.
Article
in English
| MEDLINE | ID: mdl-38572058
7.
An open source knowledge graph ecosystem for the life sciences.
Sci Data
; 11(1): 363, 2024 Apr 11.
Article
in English
| MEDLINE | ID: mdl-38605048
8.
Mutual information analysis reveals coevolving residues in Tat that compensate for two distinct functions in HIV-1 gene expression.
J Biol Chem
; 287(11): 7945-55, 2012 Mar 09.
Article
in English
| MEDLINE | ID: mdl-22253435
9.
An SF1 affinity model to identify branch point sequences in human introns.
Nucleic Acids Res
; 39(6): 2344-56, 2011 Mar.
Article
in English
| MEDLINE | ID: mdl-21071404
10.
Gene Set Summarization using Large Language Models.
ArXiv
; 2023 May 25.
Article
in English
| MEDLINE | ID: mdl-37292480
11.
GRAPE for fast and scalable graph processing and random-walk-based embedding.
Nat Comput Sci
; 3(6): 552-568, 2023 Jun.
Article
in English
| MEDLINE | ID: mdl-38177435
12.
Deletion of the Desulfovibrio vulgaris carbon monoxide sensor invokes global changes in transcription.
J Bacteriol
; 194(21): 5783-93, 2012 Nov.
Article
in English
| MEDLINE | ID: mdl-22904289
13.
Transcriptomic and proteomic analyses of Desulfovibrio vulgaris biofilms: carbon and energy flow contribute to the distinct biofilm growth state.
BMC Genomics
; 13: 138, 2012 Apr 16.
Article
in English
| MEDLINE | ID: mdl-22507456
14.
Functional characterization of Crp/Fnr-type global transcriptional regulators in Desulfovibrio vulgaris Hildenborough.
Appl Environ Microbiol
; 78(4): 1168-77, 2012 Feb.
Article
in English
| MEDLINE | ID: mdl-22156435
15.
MicrobesOnline: an integrated portal for comparative and functional genomics.
Nucleic Acids Res
; 38(Database issue): D396-400, 2010 Jan.
Article
in English
| MEDLINE | ID: mdl-19906701
16.
Why was this cited? Explainable machine learning applied to COVID-19 research literature.
Scientometrics
; 127(5): 2313-2349, 2022.
Article
in English
| MEDLINE | ID: mdl-35431364
17.
Expression profiling of hypothetical genes in Desulfovibrio vulgaris leads to improved functional annotation.
Nucleic Acids Res
; 37(9): 2926-39, 2009 May.
Article
in English
| MEDLINE | ID: mdl-19293273
18.
Zinc against COVID-19? Symptom surveillance and deficiency risk groups.
PLoS Negl Trop Dis
; 15(1): e0008895, 2021 01.
Article
in English
| MEDLINE | ID: mdl-33395417
19.
KG-COVID-19: A Framework to Produce Customized Knowledge Graphs for COVID-19 Response.
Patterns (N Y)
; 2(1): 100155, 2021 Jan 08.
Article
in English
| MEDLINE | ID: mdl-33196056
20.
Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities.
mSystems
; 6(1)2021 02 23.
Article
in English
| MEDLINE | ID: mdl-33622857