Search details
1.
A genome-wide spectrum of tandem repeat expansions in 338,963 humans.
Cell
; 187(9): 2336-2341.e5, 2024 Apr 25.
Article
in English
| MEDLINE | ID: mdl-38582080
2.
Spliceosome Profiling Visualizes Operations of a Dynamic RNP at Nucleotide Resolution.
Cell
; 173(4): 1014-1030.e17, 2018 05 03.
Article
in English
| MEDLINE | ID: mdl-29727661
3.
Transcriptomic congruence analysis for evaluating model organisms.
Proc Natl Acad Sci U S A
; 120(6): e2202584120, 2023 02 07.
Article
in English
| MEDLINE | ID: mdl-36730203
4.
The interplay between translational efficiency, poly(A) tails, microRNAs, and neuronal activation.
RNA
; 28(6): 808-831, 2022 06.
Article
in English
| MEDLINE | ID: mdl-35273099
5.
scSampler: fast diversity-preserving subsampling of large-scale single-cell transcriptomic data.
Bioinformatics
; 38(11): 3126-3127, 2022 05 26.
Article
in English
| MEDLINE | ID: mdl-35426898
6.
Single-cell generalized trend model (scGTM): a flexible and interpretable model of gene expression trend along cell pseudotime.
Bioinformatics
; 38(16): 3927-3934, 2022 08 10.
Article
in English
| MEDLINE | ID: mdl-35758616
7.
AIDE: annotation-assisted isoform discovery with high precision.
Genome Res
; 29(12): 2056-2072, 2019 12.
Article
in English
| MEDLINE | ID: mdl-31694868
8.
scPNMF: sparse gene encoding of single cells to facilitate gene selection for targeted gene profiling.
Bioinformatics
; 37(Suppl_1): i358-i366, 2021 07 12.
Article
in English
| MEDLINE | ID: mdl-34252925
9.
Bipartite tight spectral clustering (BiTSC) algorithm for identifying conserved gene co-clusters in two species.
Bioinformatics
; 37(9): 1225-1233, 2021 06 09.
Article
in English
| MEDLINE | ID: mdl-32814973
10.
RAD: a web application to identify region associated differentially expressed genes.
Bioinformatics
; 37(17): 2741-2743, 2021 Sep 09.
Article
in English
| MEDLINE | ID: mdl-33532827
11.
Identifying the combinatorial control of signal-dependent transcription factors.
PLoS Comput Biol
; 17(6): e1009095, 2021 06.
Article
in English
| MEDLINE | ID: mdl-34166361
12.
Network Modeling in Biology: Statistical Methods for Gene and Brain Networks.
Stat Sci
; 36(1): 89-108, 2021 Feb.
Article
in English
| MEDLINE | ID: mdl-34305304
13.
EpiAlign: an alignment-based bioinformatic tool for comparing chromatin state sequences.
Nucleic Acids Res
; 47(13): e77, 2019 07 26.
Article
in English
| MEDLINE | ID: mdl-31045217
14.
Large-scale comparative epigenomics reveals hierarchical regulation of non-CG methylation in Arabidopsis.
Proc Natl Acad Sci U S A
; 115(5): E1069-E1074, 2018 01 30.
Article
in English
| MEDLINE | ID: mdl-29339507
15.
A statistical simulator scDesign for rational scRNA-seq experimental design.
Bioinformatics
; 35(14): i41-i50, 2019 07 15.
Article
in English
| MEDLINE | ID: mdl-31510652
16.
Comparative analysis of the transcriptome across distant species.
Nature
; 512(7515): 445-8, 2014 Aug 28.
Article
in English
| MEDLINE | ID: mdl-25164755
17.
Comparative analysis of regulatory information and circuits across distant species.
Nature
; 512(7515): 453-6, 2014 Aug 28.
Article
in English
| MEDLINE | ID: mdl-25164757
18.
Quantitating translational control: mRNA abundance-dependent and independent contributions and the mRNA sequences that specify them.
Nucleic Acids Res
; 45(20): 11821-11836, 2017 Nov 16.
Article
in English
| MEDLINE | ID: mdl-29040683
19.
Large-scale mapping of mammalian transcriptomes identifies conserved genes associated with different cell states.
Nucleic Acids Res
; 45(4): 1657-1672, 2017 02 28.
Article
in English
| MEDLINE | ID: mdl-27980097
20.
Correspondence of D. melanogaster and C. elegans developmental stages revealed by alternative splicing characteristics of conserved exons.
BMC Genomics
; 18(1): 234, 2017 03 16.
Article
in English
| MEDLINE | ID: mdl-28302059