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1.
Genes of the N-methylglutamate pathway are essential for growth of Methylobacterium extorquens DM4 with monomethylamine.
Appl Environ Microbiol
; 80(11): 3541-50, 2014 Jun.
Article
in English
| MEDLINE | ID: mdl-24682302
2.
Forecasting the dynamics of a complex microbial community using integrated meta-omics.
Nat Ecol Evol
; 8(1): 32-44, 2024 Jan.
Article
in English
| MEDLINE | ID: mdl-37957315
3.
Genome sequence of "Candidatus Microthrix parvicella" Bio17-1, a long-chain-fatty-acid-accumulating filamentous actinobacterium from a biological wastewater treatment plant.
J Bacteriol
; 194(23): 6670-1, 2012 Dec.
Article
in English
| MEDLINE | ID: mdl-23144412
4.
Complete genome sequences of six strains of the genus Methylobacterium.
J Bacteriol
; 194(17): 4746-8, 2012 Sep.
Article
in English
| MEDLINE | ID: mdl-22887658
5.
Complete genome sequence of the chloromethane-degrading Hyphomicrobium sp. strain MC1.
J Bacteriol
; 193(18): 5035-6, 2011 Sep.
Article
in English
| MEDLINE | ID: mdl-21868803
6.
Functional genomics of dichloromethane utilization in Methylobacterium extorquens DM4.
Environ Microbiol
; 13(9): 2518-35, 2011 Sep.
Article
in English
| MEDLINE | ID: mdl-21854516
7.
Water table fluctuations affect dichloromethane biodegradation in lab-scale aquifers contaminated with organohalides.
Water Res
; 203: 117530, 2021 Sep 15.
Article
in English
| MEDLINE | ID: mdl-34388502
8.
Challenges, Strategies, and Perspectives for Reference-Independent Longitudinal Multi-Omic Microbiome Studies.
Front Genet
; 12: 666244, 2021.
Article
in English
| MEDLINE | ID: mdl-34194470
9.
Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics.
Nat Microbiol
; 6(1): 123-135, 2021 01.
Article
in English
| MEDLINE | ID: mdl-33139880
10.
Dichloromethane Degradation Pathway from Unsequenced Hyphomicrobium sp. MC8b Rapidly Explored by Pan-Proteomics.
Microorganisms
; 8(12)2020 Nov 27.
Article
in English
| MEDLINE | ID: mdl-33260855
11.
Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance.
Nat Commun
; 11(1): 5281, 2020 10 19.
Article
in English
| MEDLINE | ID: mdl-33077707
12.
Determining Microbial Niche Breadth in the Environment for Better Ecosystem Fate Predictions.
mSystems
; 4(3)2019 Jun 11.
Article
in English
| MEDLINE | ID: mdl-31186307
13.
The social dimension of microbial niches.
Nat Ecol Evol
; 7(5): 649-650, 2023 May.
Article
in English
| MEDLINE | ID: mdl-37012376
14.
Sequential Isolation of DNA, RNA, Protein, and Metabolite Fractions from Murine Organs and Intestinal Contents for Integrated Omics of Host-Microbiota Interactions.
Methods Mol Biol
; 1841: 279-291, 2018.
Article
in English
| MEDLINE | ID: mdl-30259493
15.
A year of monitoring 20 mesophilic full-scale bioreactors reveals the existence of stable but different core microbiomes in bio-waste and wastewater anaerobic digestion systems.
Biotechnol Biofuels
; 11: 196, 2018.
Article
in English
| MEDLINE | ID: mdl-30038663
16.
Expressed protein profile of a Tectomicrobium and other microbial symbionts in the marine sponge Aplysina aerophoba as evidenced by metaproteomics.
Sci Rep
; 8(1): 11795, 2018 08 07.
Article
in English
| MEDLINE | ID: mdl-30087358
17.
Hopanoid-free Methylobacterium extorquens DM4 overproduces carotenoids and has widespread growth impairment.
PLoS One
; 12(3): e0173323, 2017.
Article
in English
| MEDLINE | ID: mdl-28319163
18.
Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life.
Front Microbiol
; 8: 738, 2017.
Article
in English
| MEDLINE | ID: mdl-28512451
19.
First draft genome sequence of a strain belonging to the Zoogloea genus and its gene expression in situ.
Stand Genomic Sci
; 12: 64, 2017.
Article
in English
| MEDLINE | ID: mdl-29075368
20.
Integrated meta-omic analyses of the gastrointestinal tract microbiome in patients undergoing allogeneic hematopoietic stem cell transplantation.
Transl Res
; 186: 79-94.e1, 2017 08.
Article
in English
| MEDLINE | ID: mdl-28686852