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1.
Federated causal inference based on real-world observational data sources: application to a SARS-CoV-2 vaccine effectiveness assessment.
BMC Med Res Methodol
; 23(1): 248, 2023 10 23.
Article
in English
| MEDLINE | ID: mdl-37872541
2.
Enabling precision medicine via standard communication of HTS provenance, analysis, and results.
PLoS Biol
; 16(12): e3000099, 2018 12.
Article
in English
| MEDLINE | ID: mdl-30596645
3.
Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data.
PLoS Biol
; 15(6): e2001414, 2017 Jun.
Article
in English
| MEDLINE | ID: mdl-28662064
4.
FAIRDOMHub: a repository and collaboration environment for sharing systems biology research.
Nucleic Acids Res
; 45(D1): D404-D407, 2017 01 04.
Article
in English
| MEDLINE | ID: mdl-27899646
5.
Ten simple rules for making a software tool workflow-ready.
PLoS Comput Biol
; 18(3): e1009823, 2022 03.
Article
in English
| MEDLINE | ID: mdl-35324885
6.
The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud.
Nucleic Acids Res
; 41(Web Server issue): W557-61, 2013 Jul.
Article
in English
| MEDLINE | ID: mdl-23640334
7.
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project.
BMC Bioinformatics
; 15: 369, 2014 Dec 14.
Article
in English
| MEDLINE | ID: mdl-25494900
8.
Community-driven development for computational biology at Sprints, Hackathons and Codefests.
BMC Bioinformatics
; 15 Suppl 14: S7, 2014.
Article
in English
| MEDLINE | ID: mdl-25472764
9.
Toward a common standard for data and specimen provenance in life sciences.
Learn Health Syst
; 8(1): e10365, 2024 Jan.
Article
in English
| MEDLINE | ID: mdl-38249839
10.
Semantic micro-contributions with decentralized nanopublication services.
PeerJ Comput Sci
; 7: e387, 2021.
Article
in English
| MEDLINE | ID: mdl-33817033
11.
Perspectives on automated composition of workflows in the life sciences.
F1000Res
; 10: 897, 2021.
Article
in English
| MEDLINE | ID: mdl-34804501
12.
CaGrid Workflow Toolkit: a Taverna based workflow tool for cancer grid.
BMC Bioinformatics
; 11: 542, 2010 Nov 02.
Article
in English
| MEDLINE | ID: mdl-21044328
13.
Sharing interoperable workflow provenance: A review of best practices and their practical application in CWLProv.
Gigascience
; 8(11)2019 11 01.
Article
in English
| MEDLINE | ID: mdl-31675414
14.
BioExcel Building Blocks, a software library for interoperable biomolecular simulation workflows.
Sci Data
; 6(1): 169, 2019 09 10.
Article
in English
| MEDLINE | ID: mdl-31506435
15.
Performing statistical analyses on quantitative data in Taverna workflows: an example using R and maxdBrowse to identify differentially-expressed genes from microarray data.
BMC Bioinformatics
; 9: 334, 2008 Aug 07.
Article
in English
| MEDLINE | ID: mdl-18687127
16.
Structuring research methods and data with the research object model: genomics workflows as a case study.
J Biomed Semantics
; 5(1): 41, 2014.
Article
in English
| MEDLINE | ID: mdl-25276335
17.
PAV ontology: provenance, authoring and versioning.
J Biomed Semantics
; 4(1): 37, 2013 Nov 22.
Article
in English
| MEDLINE | ID: mdl-24267948
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