Search details
1.
Phylogenomic Pipeline Validation for Foodborne Pathogen Disease Surveillance.
J Clin Microbiol
; 57(5)2019 05.
Article
in English
| MEDLINE | ID: mdl-30728194
2.
TreeToReads - a pipeline for simulating raw reads from phylogenies.
BMC Bioinformatics
; 18(1): 178, 2017 Mar 20.
Article
in English
| MEDLINE | ID: mdl-28320310
3.
Development of a Reference Standard Library of Chloroplast Genome Sequences, GenomeTrakrCP.
Planta Med
; 83(18): 1420-1430, 2017 Dec.
Article
in English
| MEDLINE | ID: mdl-28651291
4.
Characterization and evolution of Salmonella CRISPR-Cas systems.
Microbiology (Reading)
; 161(2): 374-386, 2015 Feb.
Article
in English
| MEDLINE | ID: mdl-28206902
5.
Characterization and evolution of Salmonella CRISPR-Cas systems.
Microbiology (Reading)
; 161(Pt 2): 374-86, 2015 Feb.
Article
in English
| MEDLINE | ID: mdl-25479838
6.
SARS-CoV-2 wastewater variant surveillance: pandemic response leveraging FDA's GenomeTrakr network.
mSystems
; : e0141523, 2024 May 31.
Article
in English
| MEDLINE | ID: mdl-38819130
7.
Performance of methods for SARS-CoV-2 variant detection and abundance estimation within mixed population samples.
PeerJ
; 11: e14596, 2023.
Article
in English
| MEDLINE | ID: mdl-36721781
8.
Enterobacterales draft genome sequences: 15 historical (1998-2004) and 30 contemporary (2015-2016) clinical isolates from Pakistan.
Microbiol Resour Announc
; 12(9): e0016323, 2023 Sep 19.
Article
in English
| MEDLINE | ID: mdl-37504519
9.
Putting everything in its place: using the INSDC compliant Pathogen Data Object Model to better structure genomic data submitted for public health applications.
Microb Genom
; 9(12)2023 Dec.
Article
in English
| MEDLINE | ID: mdl-38085797
10.
Draft genome sequences of 21 Salmonella enterica serovar enteritidis strains.
J Bacteriol
; 194(21): 5994-5, 2012 Nov.
Article
in English
| MEDLINE | ID: mdl-23045502
11.
Origin of strigolactones in the green lineage.
New Phytol
; 195(4): 857-871, 2012 Sep.
Article
in English
| MEDLINE | ID: mdl-22738134
12.
Unraveling the evolution of auxin signaling.
Plant Physiol
; 155(1): 209-21, 2011 Jan.
Article
in English
| MEDLINE | ID: mdl-21081694
13.
Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package.
Gigascience
; 112022 02 16.
Article
in English
| MEDLINE | ID: mdl-35169842
14.
Use of Whole Genome Sequencing by the Federal Interagency Collaboration for Genomics for Food and Feed Safety in the United States.
J Food Prot
; 85(5): 755-772, 2022 05 01.
Article
in English
| MEDLINE | ID: mdl-35259246
15.
Phylogeny of Salmonella enterica subspecies arizonae by whole-genome sequencing reveals high incidence of polyphyly and low phase 1 H antigen variability.
Microb Genom
; 7(2)2021 02.
Article
in English
| MEDLINE | ID: mdl-33539276
16.
Antimicrobial and Genomic Characterization of Salmonella Nigeria from Pigs and Poultry in Ilorin, North-central, Nigeria.
J Infect Dev Ctries
; 15(12): 1899-1909, 2021 12 31.
Article
in English
| MEDLINE | ID: mdl-35044949
17.
Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities.
mSystems
; 6(1)2021 02 23.
Article
in English
| MEDLINE | ID: mdl-33622857
18.
Uncovering the evolutionary origin of plant molecular processes: comparison of Coleochaete (Coleochaetales) and Spirogyra (Zygnematales) transcriptomes.
BMC Plant Biol
; 10: 96, 2010 May 25.
Article
in English
| MEDLINE | ID: mdl-20500869
19.
Optimizing open data to support one health: best practices to ensure interoperability of genomic data from bacterial pathogens.
One Health Outlook
; 2(1): 20, 2020.
Article
in English
| MEDLINE | ID: mdl-33103064
20.
Gen-FS coordinated proficiency test data for genomic foodborne pathogen surveillance, 2017 and 2018 exercises.
Sci Data
; 7(1): 402, 2020 11 19.
Article
in English
| MEDLINE | ID: mdl-33214563