Search details
1.
ResMiCo: Increasing the quality of metagenome-assembled genomes with deep learning.
PLoS Comput Biol
; 19(5): e1011001, 2023 05.
Article
in English
| MEDLINE | ID: mdl-37126495
2.
Multisubstrate DNA stable isotope probing reveals guild structure of bacteria that mediate soil carbon cycling.
Proc Natl Acad Sci U S A
; 118(47)2021 11 23.
Article
in English
| MEDLINE | ID: mdl-34799453
3.
Interpreting tree ensemble machine learning models with endoR.
PLoS Comput Biol
; 18(12): e1010714, 2022 12.
Article
in English
| MEDLINE | ID: mdl-36516158
4.
Incorporating genome-based phylogeny and functional similarity into diversity assessments helps to resolve a global collection of human gut metagenomes.
Environ Microbiol
; 24(9): 3966-3984, 2022 09.
Article
in English
| MEDLINE | ID: mdl-35049120
5.
Bacterial community dynamics explain carbon mineralization and assimilation in soils of different land-use history.
Environ Microbiol
; 24(11): 5230-5247, 2022 11.
Article
in English
| MEDLINE | ID: mdl-35920035
6.
Tracing Carbon Metabolism with Stable Isotope Metabolomics Reveals the Legacy of Diverse Carbon Sources in Soil.
Appl Environ Microbiol
; 88(22): e0083922, 2022 11 22.
Article
in English
| MEDLINE | ID: mdl-36300927
7.
Struo: a pipeline for building custom databases for common metagenome profilers.
Bioinformatics
; 36(7): 2314-2315, 2020 04 01.
Article
in English
| MEDLINE | ID: mdl-31778148
8.
DeepMAsED: evaluating the quality of metagenomic assemblies.
Bioinformatics
; 36(10): 3011-3017, 2020 05 01.
Article
in English
| MEDLINE | ID: mdl-32096824
9.
Reclassification of Catabacter hongkongensis as Christensenella hongkongensis comb. nov. based on whole genome analysis.
Int J Syst Evol Microbiol
; 71(4)2021 Apr.
Article
in English
| MEDLINE | ID: mdl-33881979
10.
Phytoplankton succession affects the composition of Polynucleobacter subtypes in humic lakes.
Environ Microbiol
; 17(3): 816-28, 2015 Mar.
Article
in English
| MEDLINE | ID: mdl-24912130
11.
Differentiation between sediment and hypolimnion methanogen communities in humic lakes.
Environ Microbiol
; 16(5): 1411-23, 2014 May.
Article
in English
| MEDLINE | ID: mdl-24237594
12.
Lineage-specific responses of microbial communities to environmental change.
Appl Environ Microbiol
; 79(1): 39-47, 2013 Jan.
Article
in English
| MEDLINE | ID: mdl-23064335
13.
Obesity is the main driver of altered gut microbiome functions in the metabolically unhealthy.
Gut Microbes
; 15(2): 2246634, 2023 12.
Article
in English
| MEDLINE | ID: mdl-37680093
14.
An integrated systems biology approach reveals differences in formate metabolism in the genus Methanothermobacter.
iScience
; 26(10): 108016, 2023 Oct 20.
Article
in English
| MEDLINE | ID: mdl-37854702
15.
Silent recognition of flagellins from human gut commensal bacteria by Toll-like receptor 5.
Sci Immunol
; 8(79): eabq7001, 2023 01 06.
Article
in English
| MEDLINE | ID: mdl-36608151
16.
Codiversification of gut microbiota with humans.
Science
; 377(6612): 1328-1332, 2022 09 16.
Article
in English
| MEDLINE | ID: mdl-36108023
17.
Struo2: efficient metagenome profiling database construction for ever-expanding microbial genome datasets.
PeerJ
; 9: e12198, 2021.
Article
in English
| MEDLINE | ID: mdl-34616633
18.
Genomic Insights into Adaptations of Trimethylamine-Utilizing Methanogens to Diverse Habitats, Including the Human Gut.
mSystems
; 6(1)2021 Feb 09.
Article
in English
| MEDLINE | ID: mdl-33563787
19.
Vertebrate host phylogeny influences gut archaeal diversity.
Nat Microbiol
; 6(11): 1443-1454, 2021 11.
Article
in English
| MEDLINE | ID: mdl-34702978
20.
Free-Living, Psychrotrophic Bacteria of the Genus Psychrobacter Are Descendants of Pathobionts.
mSystems
; 6(2)2021 Apr 13.
Article
in English
| MEDLINE | ID: mdl-33850039