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1.
Analysis of the Human Kinome and Phosphatome by Mass Cytometry Reveals Overexpression-Induced Effects on Cancer-Related Signaling.
Mol Cell
; 74(5): 1086-1102.e5, 2019 06 06.
Article
in English
| MEDLINE | ID: mdl-31101498
2.
Cross-Regulation between TDP-43 and Paraspeckles Promotes Pluripotency-Differentiation Transition.
Mol Cell
; 74(5): 951-965.e13, 2019 06 06.
Article
in English
| MEDLINE | ID: mdl-31047794
3.
PaxDb 5.0: Curated Protein Quantification Data Suggests Adaptive Proteome Changes in Yeasts.
Mol Cell Proteomics
; 22(10): 100640, 2023 Oct.
Article
in English
| MEDLINE | ID: mdl-37659604
4.
The STRING database in 2023: protein-protein association networks and functional enrichment analyses for any sequenced genome of interest.
Nucleic Acids Res
; 51(D1): D638-D646, 2023 01 06.
Article
in English
| MEDLINE | ID: mdl-36370105
5.
eggNOG 6.0: enabling comparative genomics across 12 535 organisms.
Nucleic Acids Res
; 51(D1): D389-D394, 2023 01 06.
Article
in English
| MEDLINE | ID: mdl-36399505
6.
proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes.
Nucleic Acids Res
; 51(D1): D760-D766, 2023 01 06.
Article
in English
| MEDLINE | ID: mdl-36408900
7.
Systematic assessment of pathway databases, based on a diverse collection of user-submitted experiments.
Brief Bioinform
; 23(5)2022 09 20.
Article
in English
| MEDLINE | ID: mdl-36088548
8.
From Enigma to Revelation: Unravelling Biological Functions of Ubiquitous Small Ribozymes.
Chimia (Aarau)
; 78(4): 200-204, 2024 Apr 24.
Article
in English
| MEDLINE | ID: mdl-38676609
9.
Cytoscape stringApp 2.0: Analysis and Visualization of Heterogeneous Biological Networks.
J Proteome Res
; 22(2): 637-646, 2023 02 03.
Article
in English
| MEDLINE | ID: mdl-36512705
10.
The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets.
Nucleic Acids Res
; 49(D1): D605-D612, 2021 01 08.
Article
in English
| MEDLINE | ID: mdl-33237311
11.
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses.
Nucleic Acids Res
; 47(D1): D309-D314, 2019 01 08.
Article
in English
| MEDLINE | ID: mdl-30418610
12.
Fermentation Ability of Gut Microbiota of Wild Japanese Macaques in the Highland and Lowland Yakushima: In Vitro Fermentation Assay and Genetic Analyses.
Microb Ecol
; 80(2): 459-474, 2020 Aug.
Article
in English
| MEDLINE | ID: mdl-32328670
13.
Growth-restricting effects of siRNA transfections: a largely deterministic combination of off-target binding and hybridization-independent competition.
Nucleic Acids Res
; 46(18): 9309-9320, 2018 10 12.
Article
in English
| MEDLINE | ID: mdl-30215772
14.
Standardized benchmarking in the quest for orthologs.
Nat Methods
; 13(5): 425-30, 2016 05.
Article
in English
| MEDLINE | ID: mdl-27043882
15.
The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible.
Nucleic Acids Res
; 45(D1): D362-D368, 2017 01 04.
Article
in English
| MEDLINE | ID: mdl-27924014
16.
Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper.
Mol Biol Evol
; 34(8): 2115-2122, 2017 08 01.
Article
in English
| MEDLINE | ID: mdl-28460117
17.
MAPseq: highly efficient k-mer search with confidence estimates, for rRNA sequence analysis.
Bioinformatics
; 33(23): 3808-3810, 2017 Dec 01.
Article
in English
| MEDLINE | ID: mdl-28961926
18.
Natural Genetic Variation Differentially Affects the Proteome and Transcriptome in Caenorhabditis elegans.
Mol Cell Proteomics
; 15(5): 1670-80, 2016 05.
Article
in English
| MEDLINE | ID: mdl-26944343
19.
STITCH 5: augmenting protein-chemical interaction networks with tissue and affinity data.
Nucleic Acids Res
; 44(D1): D380-4, 2016 Jan 04.
Article
in English
| MEDLINE | ID: mdl-26590256
20.
Correction to 'The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets'.
Nucleic Acids Res
; 49(18): 10800, 2021 Oct 11.
Article
in English
| MEDLINE | ID: mdl-34530444