Search details
1.
Protein interaction interface region prediction by geometric deep learning.
Bioinformatics
; 37(17): 2580-2588, 2021 Sep 09.
Article
in English
| MEDLINE | ID: mdl-33693581
2.
Comprehensive analysis of lectin-glycan interactions reveals determinants of lectin specificity.
PLoS Comput Biol
; 17(10): e1009470, 2021 10.
Article
in English
| MEDLINE | ID: mdl-34613971
3.
Building blocks and blueprints for bacterial autolysins.
PLoS Comput Biol
; 17(4): e1008889, 2021 04.
Article
in English
| MEDLINE | ID: mdl-33793553
4.
Diverse antiviral IgG effector activities are predicted by unique biophysical antibody features.
Retrovirology
; 18(1): 35, 2021 10 30.
Article
in English
| MEDLINE | ID: mdl-34717659
5.
Learning context-aware structural representations to predict antigen and antibody binding interfaces.
Bioinformatics
; 36(13): 3996-4003, 2020 07 01.
Article
in English
| MEDLINE | ID: mdl-32321157
6.
Bioinformatics-driven discovery of novel Clostridioides difficile lysins and experimental comparison with highly active benchmarks.
Biotechnol Bioeng
; 118(7): 2482-2492, 2021 07.
Article
in English
| MEDLINE | ID: mdl-33748952
7.
Computer-guided binding mode identification and affinity improvement of an LRR protein binder without structure determination.
PLoS Comput Biol
; 16(8): e1008150, 2020 08.
Article
in English
| MEDLINE | ID: mdl-32866140
8.
MHCEpitopeEnergy, a Flexible Rosetta-Based Biotherapeutic Deimmunization Platform.
J Chem Inf Model
; 61(5): 2368-2382, 2021 05 24.
Article
in English
| MEDLINE | ID: mdl-33900750
9.
Antibody Fab-Fc properties outperform titer in predictive models of SIV vaccine-induced protection.
Mol Syst Biol
; 15(5): e8747, 2019 05 02.
Article
in English
| MEDLINE | ID: mdl-31048360
10.
Computationally optimized deimmunization libraries yield highly mutated enzymes with low immunogenicity and enhanced activity.
Proc Natl Acad Sci U S A
; 114(26): E5085-E5093, 2017 06 27.
Article
in English
| MEDLINE | ID: mdl-28607051
11.
Characterizing Epitope Binding Regions of Entire Antibody Panels by Combining Experimental and Computational Analysis of Antibody: Antigen Binding Competition.
Molecules
; 25(16)2020 Aug 11.
Article
in English
| MEDLINE | ID: mdl-32796656
12.
Balancing sensitivity and specificity in distinguishing TCR groups by CDR sequence similarity.
BMC Bioinformatics
; 20(1): 241, 2019 May 15.
Article
in English
| MEDLINE | ID: mdl-31092185
13.
DisruPPI: structure-based computational redesign algorithm for protein binding disruption.
Bioinformatics
; 34(13): i245-i253, 2018 07 01.
Article
in English
| MEDLINE | ID: mdl-29949961
14.
High-resolution definition of humoral immune response correlates of effective immunity against HIV.
Mol Syst Biol
; 14(3): e7881, 2018 03 26.
Article
in English
| MEDLINE | ID: mdl-29581149
15.
Polyfunctional HIV-Specific Antibody Responses Are Associated with Spontaneous HIV Control.
PLoS Pathog
; 12(1): e1005315, 2016 Jan.
Article
in English
| MEDLINE | ID: mdl-26745376
16.
Diversity of Antiviral IgG Effector Activities Observed in HIV-Infected and Vaccinated Subjects.
J Immunol
; 197(12): 4603-4612, 2016 12 15.
Article
in English
| MEDLINE | ID: mdl-27913647
17.
Mapping the Pareto optimal design space for a functionally deimmunized biotherapeutic candidate.
PLoS Comput Biol
; 11(1): e1003988, 2015 Jan.
Article
in English
| MEDLINE | ID: mdl-25568954
18.
Machine learning methods enable predictive modeling of antibody feature:function relationships in RV144 vaccinees.
PLoS Comput Biol
; 11(4): e1004185, 2015 Apr.
Article
in English
| MEDLINE | ID: mdl-25874406
19.
Development and validation of an epitope prediction tool for swine (PigMatrix) based on the pocket profile method.
BMC Bioinformatics
; 16: 290, 2015 Sep 15.
Article
in English
| MEDLINE | ID: mdl-26370412
20.
HCV epitope, homologous to multiple human protein sequences, induces a regulatory T cell response in infected patients.
J Hepatol
; 62(1): 48-55, 2015 Jan.
Article
in English
| MEDLINE | ID: mdl-25157982