Search | Virtual Health Library

1.

FIMTrack: An open source tracking and locomotion analysis software for small animals.

Risse, Benjamin; Berh, Dimitri; Otto, Nils; Klämbt, Christian; Jiang, Xiaoyi.

PLoS Comput Biol ; 13(5): e1005530, 2017 05.

Article in English | MEDLINE | ID: mdl-28493862

2.

The Drosophila FHOD1-like formin Knittrig acts through Rok to promote stress fiber formation and directed macrophage migration during the cellular immune response.

Lammel, Uwe; Bechtold, Meike; Risse, Benjamin; Berh, Dimitri; Fleige, Astrid; Bunse, Ingrid; Jiang, Xiaoyi; Klämbt, Christian; Bogdan, Sven.

Development ; 141(6): 1366-80, 2014 Mar.

Article in English | MEDLINE | ID: mdl-24553290

3.

The Ol₁mpiad: concordance of behavioural faculties of stage 1 and stage 3 Drosophila larvae.

Almeida-Carvalho, Maria J; Berh, Dimitri; Braun, Andreas; Chen, Yi-Chun; Eichler, Katharina; Eschbach, Claire; Fritsch, Pauline M J; Gerber, Bertram; Hoyer, Nina; Jiang, Xiaoyi; Kleber, Jörg; Klämbt, Christian; König, Christian; Louis, Matthieu; Michels, Birgit; Miroschnikow, Anton; Mirth, Christen; Miura, Daisuke; Niewalda, Thomas; Otto, Nils; Paisios, Emmanouil; Pankratz, Michael J; Petersen, Meike; Ramsperger, Noel; Randel, Nadine; Risse, Benjamin; Saumweber, Timo; Schlegel, Philipp; Schleyer, Michael; Soba, Peter; Sprecher, Simon G; Tanimura, Teiichi; Thum, Andreas S; Toshima, Naoko; Truman, Jim W; Yarali, Ayse; Zlatic, Marta.

J Exp Biol ; 220(Pt 13): 2452-2475, 2017 07 01.

Article in English | MEDLINE | ID: mdl-28679796

4.

Resolving Colliding Larvae by Fitting ASM to Random Walker-Based Pre-Segmentations.

Bian, Ang; Jiang, Xiaoyi; Berh, Dimitri; Risse, Benjamin.

IEEE/ACM Trans Comput Biol Bioinform ; 18(3): 1184-1194, 2021.

Article in English | MEDLINE | ID: mdl-31425121

5.

An RJMCMC-Based Method for Tracking and Resolving Collisions of Drosophila Larvae.

Michels, Tim; Berh, Dimitri; Jiang, Xiaoyi.

IEEE/ACM Trans Comput Biol Bioinform ; 16(2): 465-474, 2019.

Article in English | MEDLINE | ID: mdl-29990198

6.

Automatic non-invasive heartbeat quantification of Drosophila pupae.

Berh, Dimitri; Scherzinger, Aaron; Otto, Nils; Jiang, Xiaoyi; Klämbt, Christian; Risse, Benjamin.

Comput Biol Med ; 93: 189-199, 2018 02 01.

Article in English | MEDLINE | ID: mdl-29324364

7.

The sulfite oxidase Shopper controls neuronal activity by regulating glutamate homeostasis in Drosophila ensheathing glia.

Otto, Nils; Marelja, Zvonimir; Schoofs, Andreas; Kranenburg, Holger; Bittern, Jonas; Yildirim, Kerem; Berh, Dimitri; Bethke, Maria; Thomas, Silke; Rode, Sandra; Risse, Benjamin; Jiang, Xiaoyi; Pankratz, Michael; Leimkühler, Silke; Klämbt, Christian.

Nat Commun ; 9(1): 3514, 2018 08 29.

Article in English | MEDLINE | ID: mdl-30158546

8.

FIM$

Risse, Benjamin; Otto, Nils; Berh, Dimitri; Kiel, Matthias; Klambt, Christian.

IEEE Trans Biomed Eng ; 64(3): 610-620, 2017 03.

Article in English | MEDLINE | ID: mdl-28113210

9.

An FIM-Based Long-Term In-Vial Monitoring System for Drosophila Larvae.

Berh, Dimitri; Risse, Benjamin; Michels, Tim; Otto, Nils; Klambt, Christian.

IEEE Trans Biomed Eng ; 64(8): 1862-1874, 2017 08.

Article in English | MEDLINE | ID: mdl-28113288

10.

Interactions among Drosophila larvae before and during collision.

Otto, Nils; Risse, Benjamin; Berh, Dimitri; Bittern, Jonas; Jiang, Xiaoyi; Klämbt, Christian.

Sci Rep ; 6: 31564, 2016 08 11.

Article in English | MEDLINE | ID: mdl-27511760

11.

Quantifying subtle locomotion phenotypes of Drosophila larvae using internal structures based on FIM images.

Risse, Benjamin; Berh, Dimitri; Otto, Nils; Jiang, Xiaoyi; Klämbt, Christian.

Comput Biol Med ; 63: 269-76, 2015 Aug.

Article in English | MEDLINE | ID: mdl-25280919

12.

FIM imaging and FIMtrack: two new tools allowing high-throughput and cost effective locomotion analysis.

Risse, Benjamin; Otto, Nils; Berh, Dimitri; Jiang, Xiaoyi; Klämbt, Christian.

J Vis Exp ; (94)2014 Dec 24.

Article in English | MEDLINE | ID: mdl-25591081

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