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1.

Proteogenomic analysis of chemo-refractory high-grade serous ovarian cancer.

Chowdhury, Shrabanti; Kennedy, Jacob J; Ivey, Richard G; Murillo, Oscar D; Hosseini, Noshad; Song, Xiaoyu; Petralia, Francesca; Calinawan, Anna; Savage, Sara R; Berry, Anna B; Reva, Boris; Ozbek, Umut; Krek, Azra; Ma, Weiping; da Veiga Leprevost, Felipe; Ji, Jiayi; Yoo, Seungyeul; Lin, Chenwei; Voytovich, Uliana J; Huang, Yajue; Lee, Sun-Hee; Bergan, Lindsay; Lorentzen, Travis D; Mesri, Mehdi; Rodriguez, Henry; Hoofnagle, Andrew N; Herbert, Zachary T; Nesvizhskii, Alexey I; Zhang, Bing; Whiteaker, Jeffrey R; Fenyo, David; McKerrow, Wilson; Wang, Joshua; Schürer, Stephan C; Stathias, Vasileios; Chen, X Steven; Barcellos-Hoff, Mary Helen; Starr, Timothy K; Winterhoff, Boris J; Nelson, Andrew C; Mok, Samuel C; Kaufmann, Scott H; Drescher, Charles; Cieslik, Marcin; Wang, Pei; Birrer, Michael J; Paulovich, Amanda G.

Cell ; 186(16): 3476-3498.e35, 2023 08 03.

Article in English | MEDLINE | ID: mdl-37541199

2.

Proteogenomic analysis of chemo-refractory high-grade serous ovarian cancer.

Chowdhury, Shrabanti; Kennedy, Jacob J; Ivey, Richard G; Murillo, Oscar D; Hosseini, Noshad; Song, Xiaoyu; Petralia, Francesca; Calinawan, Anna; Savage, Sara R; Berry, Anna B; Reva, Boris; Ozbek, Umut; Krek, Azra; Ma, Weiping; da Veiga Leprevost, Felipe; Ji, Jiayi; Yoo, Seungyeul; Lin, Chenwei; Voytovich, Uliana J; Huang, Yajue; Lee, Sun-Hee; Bergan, Lindsay; Lorentzen, Travis D; Mesri, Mehdi; Rodriguez, Henry; Hoofnagle, Andrew N; Herbert, Zachary T; Nesvizhskii, Alexey I; Zhang, Bing; Whiteaker, Jeffrey R; Fenyo, David; McKerrow, Wilson; Wang, Joshua; Schürer, Stephan C; Stathias, Vasileios; Chen, X Steven; Barcellos-Hoff, Mary Helen; Starr, Timothy K; Winterhoff, Boris J; Nelson, Andrew C; Mok, Samuel C; Kaufmann, Scott H; Drescher, Charles; Cieslik, Marcin; Wang, Pei; Birrer, Michael J; Paulovich, Amanda G.

Cell ; 187(4): 1016, 2024 Feb 15.

Article in English | MEDLINE | ID: mdl-38364782

3.

Multi-omic profiling of simultaneous ductal carcinoma in situ and invasive breast cancer.

Kaplan, Henry G; Dowdell, Alexa K; Berry, Anna B; Shimol, Racheli Ben; Robinson, Fred L; Carney, Christopher A; Piening, Brian D.

Breast Cancer Res Treat ; 205(3): 451-464, 2024 Jun.

Article in English | MEDLINE | ID: mdl-38523186

4.

Framework for development of physician competencies in genomic medicine: report of the Competencies Working Group of the Inter-Society Coordinating Committee for Physician Education in Genomics.

Korf, Bruce R; Berry, Anna B; Limson, Melvin; Marian, Ali J; Murray, Michael F; O'Rourke, P Pearl; Passamani, Eugene R; Relling, Mary V; Tooker, John; Tsongalis, Gregory J; Rodriguez, Laura L.

Genet Med ; 16(11): 804-9, 2014 Nov.

Article in English | MEDLINE | ID: mdl-24763287

5.

Real-World Impact of Comprehensive Genomic Profiling on Biomarker Detection, Receipt of Therapy, and Clinical Outcomes in Advanced Non-Small Cell Lung Cancer.

Wallenta Law, Jeanna; Bapat, Bela; Sweetnam, Connor; Mohammed, Hina; McBratney, Ashleigh; Izano, Monika A; Scannell Bryan, Molly; Spencer, Scott; Schroeder, Brock; Hostin, Damon; Simon, George R; Berry, Anna B.

JCO Precis Oncol ; 8: e2400075, 2024 May.

Article in English | MEDLINE | ID: mdl-38754057

6.

Inferring Negative Molecular Biomarker Data at Scale.

McBratney, Ashleigh E; Holmes, Benjamin A; Brown, Giles S; Warrier, Raghu; Berry, Anna B.

JCO Clin Cancer Inform ; 7: e2200158, 2023 03.

Article in English | MEDLINE | ID: mdl-36888934

7.

Race-Associated Genomic Correlates of Therapeutic Response in African American Patients With Non-Small-Cell Lung Cancer.

Li, Pin; Kane, Kaitlyn; Wolf, Frank M; Berry, Anna B; Gadgeel, Shirish; Pilling, Amanda.

JCO Precis Oncol ; 7: e2300155, 2023 08.

Article in English | MEDLINE | ID: mdl-37625101

8.

A Curriculum for Genomic Education of Molecular Genetic Pathology Fellows: A Report of the Association for Molecular Pathology Training and Education Committee.

Rosenbaum, Jason N; Berry, Anna B; Church, Alanna J; Crooks, Kristy; Gagan, Jeffrey R; López-Terrada, Dolores; Pfeifer, John D; Rennert, Hanna; Schrijver, Iris; Snow, Anthony N; Wu, David; Ewalt, Mark D.

J Mol Diagn ; 23(10): 1218-1240, 2021 10.

Article in English | MEDLINE | ID: mdl-34245921

9.

The Cancer Immunotherapy Biomarker Testing Landscape.

Walk, Eric E; Yohe, Sophia L; Beckman, Amy; Schade, Andrew; Zutter, Mary M; Pfeifer, John; Berry, Anna B.

Arch Pathol Lab Med ; 144(6): 706-724, 2020 06.

Article in English | MEDLINE | ID: mdl-31714809

10.

UroVysion testing can lead to early identification of intravesical therapy failure in patients with high risk non-muscle invasive bladder cancer.

Whitson, Jared M; Berry, Anna B; Carroll, Peter R; Konety, Badrinath R.

Int Braz J Urol ; 35(6): 664-70; discussion 671-2, 2009.

Article in English | MEDLINE | ID: mdl-20028572

11.

Preanalytics and Precision Pathology: Pathology Practices to Ensure Molecular Integrity of Cancer Patient Biospecimens for Precision Medicine.

Compton, Carolyn C; Robb, James A; Anderson, Matthew W; Berry, Anna B; Birdsong, George G; Bloom, Kenneth J; Branton, Philip A; Crothers, Jessica W; Cushman-Vokoun, Allison M; Hicks, David G; Khoury, Joseph D; Laser, Jordan; Marshall, Carrie B; Misialek, Michael J; Natale, Kristen E; Nowak, Jan Anthony; Olson, Damon; Pfeifer, John D; Schade, Andrew; Vance, Gail H; Walk, Eric E; Yohe, Sophia Louise.

Arch Pathol Lab Med ; 143(11): 1346-1363, 2019 11.

Article in English | MEDLINE | ID: mdl-31329478

12.

Analytic inquiry: Validation and practical considerations.

Berry, Anna B.

Cancer Cytopathol ; 125(S6): 465-469, 2017 Jun.

Article in English | MEDLINE | ID: mdl-28609008

13.

Nodular Fasciitis: Definitive Diagnosis by Fine Needle Aspiration.

Berry, Anna B; Jaffee, Ian; Greenberg, Matthew; Eisele, David W; Ljung, Britt-Marie.

Acta Cytol ; 60(1): 19-24, 2016.

Article in English | MEDLINE | ID: mdl-26981858

14.

FNA diagnosis of giant cell fibroblastoma: a case report of an unusual pediatric soft tissue tumor.

Davis, Jessica L; Mathes, Erin; Berry, Anna B.

Diagn Cytopathol ; 43(4): 325-8, 2015 Apr.

Article in English | MEDLINE | ID: mdl-25088682

15.

Reflex ImmunoCyt testing for the diagnosis of bladder cancer in patients with atypical urine cytology.

Odisho, Anobel Y; Berry, Anna B; Ahmad, Ardalan E; Cooperberg, Matthew R; Carroll, Peter R; Konety, Badrinath R.

Eur Urol ; 63(5): 936-40, 2013 May.

Article in English | MEDLINE | ID: mdl-22521093

16.

Reply to Jai Prakash, Apul Goel and Manish Garg's Letter to the Editor re: Anobel Y. Odisho, Anna B. Berry, Ardalan E. Ahmad, Matthew R. Cooperberg, Peter R. Carroll, Badrinath R. Konety. Reflex ImmunoCyt Testing for the Diagnosis of Bladder Cancer in Patients with Atypical Urine Cytology. Eur Urol. In press. http://dx.doi.org/10.1016/j.eururo.2012.04.019.

Odisho, Anobel Y; Berry, Anna B; Ahmad, Ardalan E; Cooperberg, Matthew R; Carroll, Peter R; Konety, Badrinath R.

Eur Urol ; 62(5): e88, 2012 Nov.

Article in English | MEDLINE | ID: mdl-22921716

17.

Urovysion testing can lead to early identification of intravesical therapy failure in patients with high risk non-muscle invasive bladder cancer

Whitson, Jared M; Berry, Anna B; Carroll, Peter R; Konety, Badrinath R.

Int. braz. j. urol ; 35(6): 664-672, Nov.-Dec. 2009. tab, ilus

Article in English | LILACS | ID: lil-536799

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Proteogenomic analysis of chemo-refractory high-grade serous ovarian cancer.

Proteogenomic analysis of chemo-refractory high-grade serous ovarian cancer.

Multi-omic profiling of simultaneous ductal carcinoma in situ and invasive breast cancer.

Framework for development of physician competencies in genomic medicine: report of the Competencies Working Group of the Inter-Society Coordinating Committee for Physician Education in Genomics.

Real-World Impact of Comprehensive Genomic Profiling on Biomarker Detection, Receipt of Therapy, and Clinical Outcomes in Advanced Non-Small Cell Lung Cancer.

Inferring Negative Molecular Biomarker Data at Scale.

Race-Associated Genomic Correlates of Therapeutic Response in African American Patients With Non-Small-Cell Lung Cancer.

A Curriculum for Genomic Education of Molecular Genetic Pathology Fellows: A Report of the Association for Molecular Pathology Training and Education Committee.

The Cancer Immunotherapy Biomarker Testing Landscape.

UroVysion testing can lead to early identification of intravesical therapy failure in patients with high risk non-muscle invasive bladder cancer.

Preanalytics and Precision Pathology: Pathology Practices to Ensure Molecular Integrity of Cancer Patient Biospecimens for Precision Medicine.

Analytic inquiry: Validation and practical considerations.

Nodular Fasciitis: Definitive Diagnosis by Fine Needle Aspiration.

FNA diagnosis of giant cell fibroblastoma: a case report of an unusual pediatric soft tissue tumor.

Reflex ImmunoCyt testing for the diagnosis of bladder cancer in patients with atypical urine cytology.

Urovysion testing can lead to early identification of intravesical therapy failure in patients with high risk non-muscle invasive bladder cancer