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1.
Circ Res ; 112(5): 826-30, 2013 Mar 01.
Article in English | MEDLINE | ID: mdl-23303164

ABSTRACT

RATIONALE: Genetic testing for Long QT Syndrome is now a standard and integral component of clinical cardiology. A major obstacle to the interpretation of genetic findings is the lack of robust functional assays to determine the pathogenicity of identified gene variants in a high-throughput manner. OBJECTIVE: The goal of this study was to design and test a high-throughput in vivo cardiac assay to distinguish between disease-causing and benign KCNH2 (hERG1) variants, using the zebrafish as a model organism. METHODS AND RESULTS: We tested the ability of previously characterized Long QT Syndrome hERG1 mutations and polymorphisms to restore normal repolarization in the kcnh2-knockdown embryonic zebrafish. The cardiac assay correctly identified a benign variant in 9 of 10 cases (negative predictive value 90%), whereas correctly identifying a disease-causing variant in 39/39 cases (positive predictive value 100%). CONCLUSIONS: The in vivo zebrafish cardiac assay approaches the accuracy of the current benchmark in vitro assay for the detection of disease-causing mutations, and is far superior in terms of throughput rate. Together with emerging algorithms for interpreting a positive long QT syndrome genetic test, the zebrafish cardiac assay provides an additional tool for the final determination of pathogenicity of gene variants identified in long QT syndrome genetic screening.


Subject(s)
Heart/physiopathology , High-Throughput Screening Assays/methods , Long QT Syndrome/genetics , Long QT Syndrome/physiopathology , Mutation/genetics , Zebrafish/genetics , Algorithms , Animals , Disease Models, Animal , Ether-A-Go-Go Potassium Channels/genetics , Gene Knockdown Techniques , Genetic Predisposition to Disease/genetics , Genetic Testing , Polymorphism, Genetic/genetics , Predictive Value of Tests , Zebrafish/embryology , Zebrafish Proteins/genetics
2.
J Mol Neurosci ; 34(3): 235-40, 2008 Mar.
Article in English | MEDLINE | ID: mdl-18253865

ABSTRACT

Several lines of evidence support a role of oxidative stress in the pathology of Alzheimer's disease (AD). NAD(P)H:quinone oxidoreductase 1 (NQO1) catalyzes the two-electron reduction of quinones, preventing their participation in redox cycling and subsequent generation of reactive oxygen species. We examined association between the NQO1 C609T gene polymorphism and sporadic AD in a Chinese population comprising 311 AD patients and 330 controls. Our results showed a higher T-allele frequency in the AD cases compared with the controls. The difference was close to but did not reach statistically significant level [p = 0.059; odds ratio (OR) T versus C = 1.236; 95% confidence interval (95% CI), 0.992-1.540]. A significantly low C/C genotype frequency in the AD cases compared with the controls was detected (p = 0.025; OR C/C versus C/T + T/T = 0.674; 95% CI, 1.049-2.098) and APOE epsilon4 status analysis revealed significant difference in the APOE epsilon4 non-carriers (p = 0.036; OR = 0.633; 95% CI, 1.027-2.427). In the > or =65 years samples, significantly low C/C frequency in the AD cases in comparison with the controls was observed in the APOE epsilon4 non-carriers (p = 0.045; OR = 0.595; 95% CI, 1.010-2.794). These results indicated that the C/C genotype had a possible protective effect against AD development, and the T allele might be a weak risk factor for late onset AD.


Subject(s)
Alzheimer Disease/enzymology , Alzheimer Disease/genetics , Brain Chemistry/genetics , Brain/enzymology , NAD(P)H Dehydrogenase (Quinone)/genetics , Polymorphism, Genetic/genetics , Adult , Aged , Aged, 80 and over , Alzheimer Disease/epidemiology , Apolipoprotein E4/genetics , Asian People/genetics , Brain/physiopathology , Case-Control Studies , China/epidemiology , Cytoprotection/genetics , DNA Mutational Analysis , Female , Gene Frequency , Genetic Markers/genetics , Genetic Predisposition to Disease/epidemiology , Genetic Predisposition to Disease/genetics , Genetic Testing , Genotype , Humans , Male , Middle Aged , Oxidative Stress/genetics
3.
Neurosci Lett ; 387(1): 11-6, 2005 Oct 14.
Article in English | MEDLINE | ID: mdl-16054753

ABSTRACT

A functional polymorphism in the coding region of brain-derived neurotrophic factor (BDNF) gene (196 A/G, Met66Val) has recently been reported to be associated with Alzheimer's disease (AD) and with an overrepresentation of G allele in AD patients, but different results have also been presented. We conducted a case-control study to analyze the association between the BDNF A/G polymorphism and sporadic AD in a sample composed of 203 AD patients and 239 controls from Mainland Chinese Han population. No association between the polymorphism and AD, no association between the polymorphism and age at onset in AD, and no significant interaction between BDNF and apolipoprotein E (APOE) genotype were detected in either the total or the male samples. However, a significantly high frequency of the GG genotype in the female controls compared with the female patients was detected. A postponed age at onset in the female patients with the GG genotype was also observed. These results suggest that the GG genotype has a protection effect from AD development in females. A significant low frequency of AD patients with the BDNF GG genotype in the AD APOEepsilon4 carriers compared with the frequency of the controls with the BDNF GG genotype in the control APOEepsilon4 carriers was also detected in the female individuals, suggesting that the BDNF GG genotype may reduce the effect of APOEepsilon4 on AD risk in females. Additionally, low frequencies of BDNF G allele and GG genotype were revealed in Chinese when compared with that in the other race populations so far reported.


Subject(s)
Alzheimer Disease/ethnology , Alzheimer Disease/genetics , Brain-Derived Neurotrophic Factor/genetics , Genetic Predisposition to Disease/genetics , Polymorphism, Genetic/genetics , Adult , Age of Onset , Aged , Aged, 80 and over , Alzheimer Disease/metabolism , Amino Acid Substitution/genetics , Apolipoprotein E4 , Apolipoproteins E/genetics , China/ethnology , DNA Mutational Analysis , Female , Gene Frequency , Genetic Testing , Genotype , Humans , Male , Middle Aged , Point Mutation/genetics , Sex Factors
4.
J Nanosci Nanotechnol ; 15(4): 3103-6, 2015 Apr.
Article in English | MEDLINE | ID: mdl-26353543

ABSTRACT

Single side heterojunction silicon solar cells were designed and fabricated using Silicon-On-Insulator (SOI) substrate. The TCAD software was used to simulate the effect of silicon layer thickness, doping concentration and the series resistance. A 10.5 µm thick monocrystalline silicon layer was epitaxially grown on the SOI with boron doping concentration of 2 x 10(16) cm(-3) by thermal CVD. Very high Voc of 678 mV was achieved by applying amorphous silicon heterojunction emitter on the front surface. The single cell efficiency of 12.2% was achieved without any light trapping structures. The rear surface recombination and the series resistance are the main limiting factors for the cell efficiency in addition to the c-Si thickness. By integrating an efficient light trapping scheme and further optimizing fabrication process, higher efficiency of 14.0% is expected for this type of cells. It can be applied to integrated circuits on a monolithic chip to meet the requirements of energy autonomous systems.

5.
Brain Res ; 1328: 113-7, 2010 Apr 30.
Article in English | MEDLINE | ID: mdl-20298684

ABSTRACT

Several lines of evidence indicate that fibroblast growth factor 1 (FGF1) confers neuroprotection against excitotocity and contributes to the selective vulnerability of neurons in entorhinal cortex in Alzheimer's disease (AD). Especially, FGF1 is related to Apolipoprotein E (ApoE) expression in reactive astrocytes. Therefore, FGF1 is a promising candidate gene for AD. Two studies reported the association of a polymorphism that is located 1385bp upstream from the initial code of FGF1 gene (FGF1 -1385 C>T) polymorphism with AD. To determine whether this polymorphism could affect AD development, we investigated the association between this polymorphism and AD risk in 372 sporadic AD patients and 349 controls in a Chinese Han population. No significant difference of allele and genotype distributions between the AD cases and the controls was observed in the total samples (for the alleles, chi(2)=0.126; p=0.722; for the genotypes, chi(2)=0.089; p=0.765), neither when the samples were stratified by ApoE epsilon4-carrying status, age/age at onset and gender. Our data suggested no association between the FGF1 -1385 C>T polymorphism and AD risk in Chinese Han population.


Subject(s)
Alzheimer Disease/genetics , Asian People/genetics , Fibroblast Growth Factor 1/genetics , Genetic Predisposition to Disease/genetics , Polymorphism, Genetic/genetics , Adult , Age of Onset , Aged , Aged, 80 and over , Alzheimer Disease/ethnology , Alzheimer Disease/metabolism , Apolipoprotein E4/genetics , Astrocytes/metabolism , Astrocytes/pathology , Base Sequence/genetics , DNA Mutational Analysis , Female , Gene Frequency/genetics , Genetic Predisposition to Disease/ethnology , Genetic Testing , Genotype , Gliosis/genetics , Gliosis/pathology , Gliosis/physiopathology , Humans , Male , Middle Aged , Point Mutation/genetics , Sex Distribution
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