Search details
1.
Conjugative plasmids interact with insertion sequences to shape the horizontal transfer of antimicrobial resistance genes.
Proc Natl Acad Sci U S A
; 118(6)2021 02 09.
Article
in English
| MEDLINE | ID: mdl-33526659
2.
Optimal SARS-CoV-2 vaccine allocation using real-time attack-rate estimates in Rhode Island and Massachusetts.
BMC Med
; 19(1): 162, 2021 07 13.
Article
in English
| MEDLINE | ID: mdl-34253200
3.
Using Genetic Distance from Archived Samples for the Prediction of Antibiotic Resistance in Escherichia coli.
Antimicrob Agents Chemother
; 64(5)2020 04 21.
Article
in English
| MEDLINE | ID: mdl-32152083
4.
Reply to Partridge et al.: Complementary bioinformatics and experimental approaches to investigate the transfer of AMR genes.
Proc Natl Acad Sci U S A
; 118(35)2021 08 31.
Article
in English
| MEDLINE | ID: mdl-34453008
5.
Reply to Shaw: Challenges for enrichment analysis of AMR gene-bearing plasmids.
Proc Natl Acad Sci U S A
; 118(21)2021 05 25.
Article
in English
| MEDLINE | ID: mdl-33975908
6.
RNF: a general framework to evaluate NGS read mappers.
Bioinformatics
; 32(1): 136-9, 2016 Jan 01.
Article
in English
| MEDLINE | ID: mdl-26353839
7.
Spaced seeds improve k-mer-based metagenomic classification.
Bioinformatics
; 31(22): 3584-92, 2015 Nov 15.
Article
in English
| MEDLINE | ID: mdl-26209798
8.
Efficient and Robust Search of Microbial Genomes via Phylogenetic Compression.
bioRxiv
; 2023 Apr 18.
Article
in English
| MEDLINE | ID: mdl-37131636
9.
High-resolution genomic surveillance elucidates a multilayered hierarchical transfer of resistance between WWTP- and human/animal-associated bacteria.
Microbiome
; 10(1): 16, 2022 01 25.
Article
in English
| MEDLINE | ID: mdl-35078531
10.
SARS-CoV-2 epidemic after social and economic reopening in three U.S. states reveals shifts in age structure and clinical characteristics.
Sci Adv
; 8(4): eabf9868, 2022 01 28.
Article
in English
| MEDLINE | ID: mdl-35080987
11.
Simplitigs as an efficient and scalable representation of de Bruijn graphs.
Genome Biol
; 22(1): 96, 2021 04 06.
Article
in English
| MEDLINE | ID: mdl-33823902
12.
Optimal SARS-CoV-2 vaccine allocation using real-time seroprevalence estimates in Rhode Island and Massachusetts.
medRxiv
; 2021 Jan 15.
Article
in English
| MEDLINE | ID: mdl-33469599
13.
SARS-CoV-2 epidemic after social and economic reopening in three US states reveals shifts in age structure and clinical characteristics.
medRxiv
; 2021 Nov 06.
Article
in English
| MEDLINE | ID: mdl-34426816
14.
Rapid inference of antibiotic resistance and susceptibility by genomic neighbour typing.
Nat Microbiol
; 5(3): 455-464, 2020 03.
Article
in English
| MEDLINE | ID: mdl-32042129
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