Search | Virtual Health Library

1.

A decade of advances in transposon-insertion sequencing.

Cain, Amy K; Barquist, Lars; Goodman, Andrew L; Paulsen, Ian T; Parkhill, Julian; van Opijnen, Tim.

Nat Rev Genet ; 21(9): 526-540, 2020 09.

Article in English | MEDLINE | ID: mdl-32533119

2.

Portrait of a killer: Uncovering resistance mechanisms and global spread of Acinetobacter baumannii.

Cain, Amy K; Hamidian, Mehrad.

PLoS Pathog ; 19(8): e1011520, 2023 08.

Article in English | MEDLINE | ID: mdl-37561719

3.

DksA is a conserved master regulator of stress response in Acinetobacter baumannii.

Maharjan, Ram P; Sullivan, Geraldine J; Adams, Felise G; Shah, Bhumika S; Hawkey, Jane; Delgado, Natasha; Semenec, Lucie; Dinh, Hue; Li, Liping; Short, Francesca L; Parkhill, Julian; Paulsen, Ian T; Barquist, Lars; Eijkelkamp, Bart A; Cain, Amy K.

Nucleic Acids Res ; 51(12): 6101-6119, 2023 07 07.

Article in English | MEDLINE | ID: mdl-37158230

4.

High-precision screening and sorting of double emulsion droplets.

Zhuang, Siyuan; Semenec, Lucie; Nagy, Stephanie S; Cain, Amy K; Inglis, David W.

Cytometry A ; 2024 Apr 18.

Article in English | MEDLINE | ID: mdl-38634684

5.

Microfluidic Separation and Enrichment of Escherichia coli by Size Using Viscoelastic Flows.

Zhang, Tianlong; Cain, Amy K; Semenec, Lucie; Liu, Ling; Hosokawa, Yoichiroh; Inglis, David W; Yalikun, Yaxiaer; Li, Ming.

Anal Chem ; 95(4): 2561-2569, 2023 01 31.

Article in English | MEDLINE | ID: mdl-36656064

6.

The Antimicrobial Properties of Pd^II - and Ru^II -pyta Complexes.

van Niekerk, Annick; Joseph, M Cassiem; Kavanagh, Angela; Dinh, Hue; Swarts, Andrew J; Mapolie, Selwyn F; Zuegg, Johannes; Cain, Amy K; Elliott, Alysha G; Blaskovich, Mark A T; Frei, Angelo.

Chembiochem ; 24(19): e202300247, 2023 10 04.

Article in English | MEDLINE | ID: mdl-37593808

7.

Elucidating Essential Genes in Plant-Associated Pseudomonas protegens Pf-5 Using Transposon Insertion Sequencing.

Fabian, Belinda K; Foster, Christie; Asher, Amy J; Elbourne, Liam D H; Cain, Amy K; Hassan, Karl A; Tetu, Sasha G; Paulsen, Ian T.

J Bacteriol ; 203(7)2021 03 08.

Article in English | MEDLINE | ID: mdl-33257523

8.

The Molecular Basis of Acinetobacter baumannii Cadmium Toxicity and Resistance.

Alquethamy, Saleh F; Adams, Felise G; Maharjan, Ram; Delgado, Natasha N; Zang, Maoge; Ganio, Katherine; Paton, James C; Hassan, Karl A; Paulsen, Ian T; McDevitt, Christopher A; Cain, Amy K; Eijkelkamp, Bart A.

Appl Environ Microbiol ; 87(22): e0171821, 2021 10 28.

Article in English | MEDLINE | ID: mdl-34495707

9.

Splicing factor proline and glutamine rich intron retention, reduced expression and aggregate formation are pathological features of amyotrophic lateral sclerosis.

Hogan, Alison L; Grima, Natalie; Fifita, Jennifer A; McCann, Emily P; Heng, Benjamin; Fat, Sandrine Chan Moi; Wu, Sharlynn; Maharjan, Ram; Cain, Amy K; Henden, Lyndal; Rayner, Stephanie; Tarr, Ingrid; Zhang, Katharine Y; Zhao, Qiongyi; Zhang, Zong-Hong; Wright, Amanda; Lee, Albert; Morsch, Marco; Yang, Shu; Williams, Kelly L; Blair, Ian P.

Neuropathol Appl Neurobiol ; 47(7): 990-1003, 2021 12.

Article in English | MEDLINE | ID: mdl-34288034

10.

Nontoxic Cobalt(III) Schiff Base Complexes with Broad-Spectrum Antifungal Activity.

Frei, Angelo; King, A Paden; Lowe, Gabrielle J; Cain, Amy K; Short, Francesca L; Dinh, Hue; Elliott, Alysha G; Zuegg, Johannes; Wilson, Justin J; Blaskovich, Mark A T.

Chemistry ; 27(6): 2021-2029, 2021 Jan 26.

Article in English | MEDLINE | ID: mdl-33231906

11.

Genomic analysis of Klebsiella pneumoniae isolates from Malawi reveals acquisition of multiple ESBL determinants across diverse lineages.

Musicha, Patrick; Msefula, Chisomo L; Mather, Alison E; Chaguza, Chrispin; Cain, Amy K; Peno, Chikondi; Kallonen, Teemu; Khonga, Margaret; Denis, Brigitte; Gray, Katherine J; Heyderman, Robert S; Thomson, Nicholas R; Everett, Dean B; Feasey, Nicholas A.

J Antimicrob Chemother ; 74(5): 1223-1232, 2019 05 01.

Article in English | MEDLINE | ID: mdl-30778540

12.

Defining the ABC of gene essentiality in streptococci.

Charbonneau, Amelia R L; Forman, Oliver P; Cain, Amy K; Newland, Graham; Robinson, Carl; Boursnell, Mike; Parkhill, Julian; Leigh, James A; Maskell, Duncan J; Waller, Andrew S.

BMC Genomics ; 18(1): 426, 2017 05 31.

Article in English | MEDLINE | ID: mdl-28569133

13.

Genomic landscape of extended-spectrum ß-lactamase resistance in Escherichia coli from an urban African setting.

Musicha, Patrick; Feasey, Nicholas A; Cain, Amy K; Kallonen, Teemu; Chaguza, Chrispin; Peno, Chikondi; Khonga, Margaret; Thompson, Sarah; Gray, Katherine J; Mather, Alison E; Heyderman, Robert S; Everett, Dean B; Thomson, Nicholas R; Msefula, Chisomo L.

J Antimicrob Chemother ; 72(6): 1602-1609, 2017 06 01.

Article in English | MEDLINE | ID: mdl-28333330

14.

The TraDIS toolkit: sequencing and analysis for dense transposon mutant libraries.

Barquist, Lars; Mayho, Matthew; Cummins, Carla; Cain, Amy K; Boinett, Christine J; Page, Andrew J; Langridge, Gemma C; Quail, Michael A; Keane, Jacqueline A; Parkhill, Julian.

Bioinformatics ; 32(7): 1109-11, 2016 04 01.

Article in English | MEDLINE | ID: mdl-26794317

15.

A method to correct for local alterations in DNA copy number that bias functional genomics assays applied to antibiotic-treated bacteria.

Sullivan, Geraldine J; Barquist, Lars; Cain, Amy K.

mSystems ; 9(4): e0066523, 2024 Apr 16.

Article in English | MEDLINE | ID: mdl-38470252

16.

Transposons Carrying the aacC2e Aminoglycoside and bla_TEM Beta-Lactam Resistance Genes in Acinetobacter.

Tobin, Liam A; Cain, Amy K; Djordjevic, Steven P; Hamidian, Mehrad.

Microb Drug Resist ; 2024 Apr 08.

Article in English | MEDLINE | ID: mdl-38593463

17.

Spectrum of activity and mechanisms of azole-bisphosphonate synergy in pathogenic Candida.

Kane, Aidan; Dinh, Hue; Campbell, Leona; Cain, Amy K; Hibbs, David; Carter, Dee.

Microbiol Spectr ; 12(6): e0012124, 2024 Jun 04.

Article in English | MEDLINE | ID: mdl-38695556

18.

The 3' UTR of vigR is required for virulence in Staphylococcus aureus and has expanded through STAR sequence repeat insertions.

Mediati, Daniel G; Dan, William; Lalaouna, David; Dinh, Hue; Pokhrel, Alaska; Rowell, Keiran N; Michie, Katharine A; Stinear, Timothy P; Cain, Amy K; Tree, Jai J.

Cell Rep ; 43(4): 114082, 2024 Apr 23.

Article in English | MEDLINE | ID: mdl-38583155

19.

Evolution of IncHI1 plasmids: two distinct lineages.

Cain, Amy K; Hall, Ruth M.

Plasmid ; 70(2): 201-8, 2013 Sep.

Article in English | MEDLINE | ID: mdl-23567475

20.

Approaches to querying bacterial genomes with transposon-insertion sequencing.

Barquist, Lars; Boinett, Christine J; Cain, Amy K.

RNA Biol ; 10(7): 1161-9, 2013 Jul.

Article in English | MEDLINE | ID: mdl-23635712

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