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1.
Pediatr Blood Cancer ; 66(1): e27402, 2019 01.
Article in English | MEDLINE | ID: mdl-30294914

ABSTRACT

Treatment of Hodgkin lymphoma (HL) has advanced over time, rendering a fatal disease now largely curable. Multiagent chemotherapy regimens, hematopoietic stem cell transplantation, and radiotherapy are the mainstays of care. Surgical intervention is rarely indicated other than for biopsy at diagnosis. However, for patients with recurrent relapsed HL isolated to one anatomical location, refractory to all other therapy, there may be a beneficial role for surgical excision. Herein, we report the surgical management of three relapsed patients with stage IVB HL who were refractory to multiple other therapeutic approaches, who all achieved good event-free survival after operative management.


Subject(s)
Hodgkin Disease/surgery , Neoplasm Recurrence, Local/surgery , Salvage Therapy , Surgical Procedures, Operative/methods , Adolescent , Child , Female , Hodgkin Disease/pathology , Humans , Neoplasm Recurrence, Local/pathology , Prognosis
2.
Child Care Health Dev ; 40(5): 723-30, 2014 Sep.
Article in English | MEDLINE | ID: mdl-24117679

ABSTRACT

BACKGROUND: Despite literature supporting a client and family-centred approach to healthcare delivery in paediatric facilities, there is little information about healthcare delivery from the perspective of teenagers in the oncology setting. The objective of this study is to describe the healthcare experiences of teenagers with cancer. METHODS: As part of a larger study on teen-centred care delivery in paediatric oncology, a survey included several open-ended questions to learn about the following: (1) what teenagers liked about the cancer care they received; (2) what they disliked about the cancer care received; and (3) what they would include if they could design the perfect cancer centre for teenagers. The survey was completed by 200 teenagers (aged 12-20 years) from three paediatric hospitals in Canada. Answers to these questions were coded and developed into themes and subthemes using a thematic analysis approach. RESULTS: The number of patients providing answers was 89% for question 1, 63% for question 2 and 68.5% for question 3. Likes and dislikes were conceptualized in terms of four key themes as follows: (1) staff at the treatment centre; (2) the cancer care they received; (3) the treatment centre itself; and (4) social activities. The most common suggestions for the perfect cancer centre included having access to better entertainment, more social opportunities to interact with peers, and a more comfortable environment for themselves and their families. CONCLUSION: Understanding teenagers' experiences in the paediatric oncology setting provides information that could be used to shape the delivery of healthcare in a way that is tailored to their needs. Further research in this area is required in order to improve existing oncology care.


Subject(s)
Neoplasms/therapy , Pediatrics , Survivors/psychology , Adolescent , Attitude of Health Personnel , Canada , Child , Cohort Studies , Data Collection , Delivery of Health Care , Female , Humans , Male , Patient Satisfaction , Young Adult
3.
Child Care Health Dev ; 40(2): 184-94, 2014 Mar.
Article in English | MEDLINE | ID: mdl-23121336

ABSTRACT

BACKGROUND: Single parents whose children have cancer are a marginalized group who report less family centred care, and therefore, less quality cancer care for their children. As such, the aims of this study were to explore how single parents of children with cancer describe their caregiving experiences and to understand their contextual life stressors. METHODS: A constructivist grounded theory method was used. Qualitative interviews with 29 single parents of children with cancer who were at least 6 months post-diagnosis were recruited between November 2009 and April 2011 from four hospitals across Canada. Line-by-line coding was used to establish codes and themes and constant comparison was used to establish relationships among emerging codes and conceptual themes. RESULTS: The first set of findings report on caregiving duties including: emotional tasks, informational tasks and physical tasks. The second set of findings report on the contextual picture of parent's lives including their living conditions, their physical and mental health and their family histories of disruption, trauma and disease. CONCLUSIONS: Single parents caring for children with cancer were found to experience several cumulative stressors in addition to the current strain of caring for a child with cancer. The synergy of these cumulative stresses with the added strain of caregiving for a child with cancer may have long-term health and financial implications for parents. Broad-based policy interventions should focus on relieving the chronic strains associated with being a single parent of a child with cancer.


Subject(s)
Adaptation, Psychological , Caregivers/psychology , Disabled Children , Neoplasms , Single Parent , Stress, Psychological , Adolescent , Canada , Child , Child, Preschool , Cost of Illness , Emotions , Female , Housing , Humans , Infant , Male , Mental Health , Neoplasms/economics , Neoplasms/mortality , Neoplasms/psychology , Parent-Child Relations , Policy Making , Professional-Patient Relations , Qualitative Research , Quality of Life , Single Parent/psychology , Social Support , Socioeconomic Factors , Surveys and Questionnaires
4.
Mycoses ; 56(4): 482-7, 2013 Jul.
Article in English | MEDLINE | ID: mdl-23437849

ABSTRACT

Invasive fungal infections (IFIs) are a major cause of morbidity and mortality in paediatric acute myeloid leukaemia (AML). This study describes risk factors for IFI and IFI-related sepsis in this population. We conducted a population-based, retrospective cohort study of children with AML in Canada. IFIs during chemotherapy and prior to haematopoietic stem cell transplantation, relapse, persistent disease or death were identified. Risk factors for proven or probable IFI were examined. Among courses complicated by IFI, risk factors for sepsis were also evaluated. There were 341 children with AML included of which 41 (12.0%) experienced 46 different episodes of IFI. Candida species accounted for 23 (50.0%) of IFIs and Aspergillus spp. accounted for 14 (30.4%). Days of broad-spectrum antibiotics, days of corticosteroids and neutropenia at start of the course were independently associated with IFI. Only days of fever were independently associated with IFI-related sepsis. Invasive fungal infections occurred in 12.0% of paediatric AML patients. Risk factors for IFI and IFI-related sepsis were identified. This knowledge may help to consider targeted strategies.


Subject(s)
Fungemia/epidemiology , Fungemia/microbiology , Immunocompromised Host , Leukemia, Myeloid, Acute/complications , Opportunistic Infections/epidemiology , Opportunistic Infections/microbiology , Adolescent , Canada/epidemiology , Child , Child, Preschool , Cohort Studies , Female , Fungi/classification , Fungi/isolation & purification , Humans , Infant , Leukemia, Myeloid, Acute/drug therapy , Male , Prevalence , Retrospective Studies , Risk Factors
5.
Child Care Health Dev ; 39(2): 185-93, 2013 Mar.
Article in English | MEDLINE | ID: mdl-22066491

ABSTRACT

BACKGROUND: Over the past two decades, there is increasing emphasis being placed upon providing family-centred care (FCC) in paediatric oncology settings. However, there is a lack of knowledge of FCC in paediatric oncology from the perspectives of immigrant parents. The purpose of this paper is to describe Chinese and South Asian immigrant parents' experiences of FCC in paediatric oncology settings in Canada. METHODS: This study adopted a constructivist grounded theory approach. Fifty first generation Chinese and South Asian parents of children with cancer who were at least 6 months post-diagnosis were recruited from six Canadian paediatric oncology centres. Interviews were conducted in English, Cantonese, Mandarin, Urdu, Punjabi or Hindi, and transcribed into English. Analysis involved line-by-line, focused and theoretical coding, and the use of the constant comparison method. RESULTS: Findings indicated that overall parents were highly satisfied with the care and services they received, and their experiences were reflective of the key elements of FCC. However, there were some areas of concern identified by participants: parents not perceiving themselves as a member of the medical team; inconsistency in the quality and co-ordination of services among healthcare providers; disrespectful and mechanical manner of a few healthcare providers; and parents' discomfort with healthcare providers communicating sensitive health-related information directly with their child. CONCLUSIONS: In order to successfully provide family-centred services to immigrant parents of children with cancer, better communication of the elements of FCC between healthcare staff and families is needed to negotiate a clear role for the parents as partners of the healthcare team. Moreover, a better understanding of how family relationships are structured in immigrant families will assist healthcare providers to balance the best interests of the child with that of the family as a unit.


Subject(s)
Child Health Services/organization & administration , Emigrants and Immigrants/psychology , Neoplasms/ethnology , Oncology Service, Hospital/organization & administration , Parents/psychology , Adolescent , Adult , Asia/ethnology , Attitude to Health , Canada , Child , Child, Preschool , China/ethnology , Family , Female , Health Services Research/methods , Humans , Infant , Infant, Newborn , Male , Middle Aged , Neoplasms/therapy , Patient-Centered Care/organization & administration , Professional-Family Relations , Qualitative Research , Socioeconomic Factors
6.
Mol Genet Metab ; 105(4): 571-4, 2012 Apr.
Article in English | MEDLINE | ID: mdl-22305856

ABSTRACT

The metabolic control of phenylalanine levels is a challenge during illness. We present the metabolic management of a 6 year old boy with classical PKU who was diagnosed with stage III intraabdominal Burkit's lymphoma and underwent surgical resection and chemotherapy. The metabolic control during chemotherapy was achieved by the use of parenteral custom made amino acid solution and pro-active adjustment of intake. From the 94 obtained plasma phenylalanine (Phe) levels, 18.4% were above our clinic's recommended upper limit (360 Āµmol/L, 6 mg/dL) while 52.7% of Phe levels were below the recommended lower limit (120 Āµmol/L, 2 mg/dL). Phe levels above recommended range were associated with low caloric/protein intake, while levels below recommended range reflected the difficulty in achieving the full prescribed Phe intake. We recommend early institution of custom made amino acid solution with maximum amino acid content and caloric intake to provide optimal phenylalanine control. Administration of phenylalanine via regular intravenous amino acid solution may assist in avoiding low Phe levels when prescribed intake is compromised due to vomiting and other disease related illnesses. Use of custom made, phenylalanine free amino acid solution proved beneficial in the management of blood phenylalanine levels in a PKU patient during chemotherapy for Burkitt lymphoma.


Subject(s)
Lymphoma/drug therapy , Parenteral Nutrition , Phenylalanine/blood , Phenylketonurias/therapy , Antineoplastic Agents/adverse effects , Child , Disease Management , Hospitalization , Humans , Male , Phenylketonurias/blood , Phenylketonurias/chemically induced
7.
Toxicol Appl Pharmacol ; 257(1): 111-21, 2011 Nov 15.
Article in English | MEDLINE | ID: mdl-21925528

ABSTRACT

Metabolomics analysis was performed on the supernatant of human embryonic stem (hES) cell cultures exposed to a blinded subset of 11 chemicals selected from the chemical library of EPA's ToxCast™ chemical screening and prioritization research project. Metabolites from hES cultures were evaluated for known and novel signatures that may be indicative of developmental toxicity. Significant fold changes in endogenous metabolites were detected for 83 putatively annotated mass features in response to the subset of ToxCast chemicals. The annotations were mapped to specific human metabolic pathways. This revealed strong effects on pathways for nicotinate and nicotinamide metabolism, pantothenate and CoA biosynthesis, glutathione metabolism, and arginine and proline metabolism pathways. Predictivity for adverse outcomes in mammalian prenatal developmental toxicity studies used ToxRefDB and other sources of information, including Stemina Biomarker Discovery's predictive DevToxĀ® model trained on 23 pharmaceutical agents of known developmental toxicity and differing potency. The model initially predicted developmental toxicity from the blinded ToxCast compounds in concordance with animal data with 73% accuracy. Retraining the model with data from the unblinded test compounds at one concentration level increased the predictive accuracy for the remaining concentrations to 83%. These preliminary results on a 11-chemical subset of the ToxCast chemical library indicate that metabolomics analysis of the hES secretome provides information valuable for predictive modeling and mechanistic understanding of mammalian developmental toxicity.


Subject(s)
Embryonic Stem Cells/drug effects , Metabolomics , Toxicity Tests/methods , Arginine/metabolism , Coenzyme A/biosynthesis , Glutathione/metabolism , Humans , Metabolomics/methods , Niacin/metabolism , Niacinamide/metabolism , Pantothenic Acid/metabolism , Proline/metabolism
8.
Br J Cancer ; 100(1): 82-8, 2009 Jan 13.
Article in English | MEDLINE | ID: mdl-19066605

ABSTRACT

The primary objective was to describe predictors of physical, emotional and social quality of life (QoL) in children receiving active treatment for cancer. This Canadian multi-institutional cross-sectional study included children with cancer receiving any type of active treatment. The primary caregiver provided information on child physical, emotional and social QoL according to the PedsQL 4.0 Generic Core scales. Between November 2004 and February 2007, 376 families provided the data. In multiple regression, children with acute lymphoblastic leukemia had better physical health (OR: 0.37, 95% CI 0.23, 0.60; P<0.0001) while intensive chemotherapy treatment (OR: 2.34, 95% CI: 1.42, 3.85; P=0.0008) and having a sibling with a chronic condition (OR: 2.53, 95% CI: 1.54, 4.15; P=0.0002) were associated with poor physical QoL. Better emotional health was associated with good prognosis, less intensive chemotherapy treatment and greater household savings, whereas female children and those with a sibling with a chronic condition had poor social QoL. Physical, emotional and social QoL are influenced by demographic, diagnostic and treatment variables. Sibling and household characteristics are associated with QoL. This information will help to identify children at higher risk of poor QoL during treatment for cancer.


Subject(s)
Neoplasms/psychology , Quality of Life , Adolescent , Child , Child, Preschool , Cross-Sectional Studies , Emotions , Female , Humans , Logistic Models , Male , Neoplasms/drug therapy , Precursor Cell Lymphoblastic Leukemia-Lymphoma/psychology , Regression Analysis
9.
J Cell Biol ; 111(5 Pt 1): 1885-94, 1990 Nov.
Article in English | MEDLINE | ID: mdl-2229178

ABSTRACT

Myofiber growth and myofibril assembly at the myotendinous junction (MTJ) of stretch-hypertrophied rabbit skeletal muscle was studied by in situ hybridization, immunofluorescence, and electron microscopy. In situ hybridization identified higher levels of myosin heavy chain (MHC) mRNA at the MTJ of fibers stretched for 4 d. Electron microscopy at the MTJ of these lengthening fibers revealed a large cytoplasmic space devoid of myofibrils, but containing polysomes, sarcoplasmic reticulum and T-membranes, mitochondria, Golgi complexes, and nascent filament assemblies. Tallies from electron micrographs indicate that myofibril assembly in stretched fibers followed a set sequence of events. (a) In stretched fiber ends almost the entire sarcolemmal membrane was electron dense but only a portion had attached myofibrils. Vinculin, detected by immunofluorescence, was greatly increased at the MTJ membrane of stretched muscles. (b) Thin filaments were anchored to the sarcolemma at the electron dense sites. (c) Thick filaments associated with these thin filaments in an unregistered manner. (d) Z-bodies splice into thin filaments and subsequently thin and thick filaments fall into sarcomeric register. Thus, the MTJ is a site of mRNA accumulation which sets up regional protein synthesis and myofibril assembly. Stretched muscles also lengthen by the addition of myotubes at their ends. After 6 d of stretch these myotubes make up the majority of fibers at the muscle ends. Essentially all these myotubes repeat the developmental program of primary myotubes and express slow MHC. MHC mRNA distribution in myotubes is disorganized as is the distribution of their myofibrils.


Subject(s)
Muscle Development , Myofibrils/physiology , Myosins/genetics , Animals , Cell Membrane/physiology , Cell Membrane/ultrastructure , Female , Muscles/ultrastructure , Myofibrils/ultrastructure , Polyribosomes , RNA, Messenger/metabolism , Rabbits , Sarcomeres/physiology , Sarcomeres/ultrastructure , Stress, Mechanical , Tendons/physiology , Tendons/ultrastructure
10.
Child Care Health Dev ; 35(1): 16-22, 2009 Jan.
Article in English | MEDLINE | ID: mdl-18991976

ABSTRACT

BACKGROUND: In order to evaluate the family-centeredness of paediatric oncology services, a psychometrically sound measure of family-centred services is needed. We performed a comprehensive evaluation of the psychometric properties of the 20-item Measure of Processes of Care (MPOC-20) in parents of children undergoing treatment for cancer at five paediatric oncology centres in Canada. METHODS: The sample included 411 parents (80% response rate). Exploratory factor analysis was used to determine the best way to group the items into scales. Psychometric tests were used to examine data quality, targeting, internal consistency reliability, within-scale construct validity and known-groups validity. RESULTS: Exploratory factor analysis identified two factors: a summary measure of family-centred services and a scale measuring activities that meet parents' general informational needs. Scores spanned the entire scale range, floor and ceiling effects were low, and the sample distribution was not unduly skewed. Scales showed acceptable internal consistency reliability (Cronbach's alphas > or =0.93). Known-group hypotheses supported the scales' ability to differentiate between groups hypothesized to differ. Moderate effect sizes were found when MPOC-20 scale scores for parents and for children with good quality of life were compared with those with poor quality of life. CONCLUSIONS: The MPOC-20 is the only evaluated instrument currently available to measure family-centred services in paediatric oncology. Paediatric cancer programmes can now use this tool to determine parental perception of the extent to which services are family-centred.


Subject(s)
Child Health Services/standards , Delivery of Health Care/standards , Neoplasms/therapy , Parents/psychology , Patient-Centered Care/standards , Quality of Health Care/standards , Adolescent , Canada , Cancer Care Facilities/standards , Child , Child, Preschool , Female , Humans , Infant , Infant, Newborn , Male , Neoplasms/nursing , Process Assessment, Health Care/methods , Professional-Patient Relations , Psychometrics , Reproducibility of Results
11.
Clin Microbiol Infect ; 22(6): 563.e9-563.e17, 2016 Jun.
Article in English | MEDLINE | ID: mdl-26932518

ABSTRACT

We evaluated single nucleotide polymorphisms (SNPs) associated with infection risk in children with newly diagnosed acute myeloid leukaemia (AML). We conducted a multicentre, prospective cohort study that included children aged ≤18Ā years with de novo AML. DNA was isolated from blood lymphocytes or buccal swabs, and candidate gene SNP analysis was conducted. Primary outcome was the occurrence of microbiologically documented sterile site infection during chemotherapy. Secondary outcomes were Gram-positive and -negative infections, viridans group streptococcal infection and proven/probable invasive fungal infection. Interpretation was guided by consistency in risk alleles and microbiologic agent with previous literature. Over the study period 254 children and adolescents with AML were enrolled. Overall, 190 (74.8%) had at least one sterile site microbiologically documented infection. Among the 172 with inferred European ancestry and DNA available, nine significant associations were observed; two were consistent with previous literature. Allele A at IL1B (rs16944) was associated with decreased microbiologically documented infection, and allele G at IL10 (rs1800896) was associated with increased risk of Gram-positive infection. We identified SNPs associated with infection risk in paediatric AML. Genotype may provide insight into mechanisms of infection risk that could be used for supportive-care novel treatments.


Subject(s)
Communicable Diseases/epidemiology , Communicable Diseases/genetics , Genetic Predisposition to Disease , Interleukin-1beta/genetics , Leukemia, Myeloid, Acute/complications , Polymorphism, Single Nucleotide , Adolescent , Child , Child, Preschool , Female , Humans , Male , Prospective Studies , Risk Assessment
12.
J Mol Biol ; 231(2): 230-40, 1993 May 20.
Article in English | MEDLINE | ID: mdl-7685392

ABSTRACT

Ferritin and transferrin receptors are co-ordinately regulated by the same RNA-protein interaction: the conserved iron regulatory element (IRE) in mRNA and the IRE-binding protein (IRE-BP/IRP/FRP/P-90). The 28 nucleotide IRE in ferritin mRNA is a single copy, with base-paired flanking regions (FL), located near the 5' cap. In the transferrin receptor mRNA, the IRE is located in the 3' untranslated region, as five variable copies and lacking predicted base-paired flanking regions; an alternate predicted structure without IREs has similar stability. When iron is scarce, ferritin mRNA does not form polyribosomes whereas the transferrin receptor mRNA is translated; when iron is abundant, ferritin mRNA forms polyribosomes and the transferrin receptor mRNA is degraded. To investigate structures which contribute to differences in the regulation of the two mRNAs, the effect of mutation of the ferritin FL was studied. Changes in structure (changes in reactivity with RNase V1 and RNase S1. Fe-bleomycin) and changes in function (translation in rabbit reticulocyte extracts) were compared for mutant and wild-type FL sequences in ferritin mRNA. The disruption of a triplet of base-pairs in the FL had diminished regulation; a second mutation to restore the triplet base-pairs conferred wild-type translational regulation. Conformation of the mutant RNA-IRE-BP complex was also different. We show that the triplet of base-pairs is conserved; the triplet is also the location of IRE-BP-dependent conformational changes in the FL structure previously observed. Increasing FL base-pairs had no effect on function. Structural changes associated with altered function included bleomycin sites in the IRE, suggesting an alternate conformation of the hairpin, and different base-stacking (V1 sensitivity) in the FL. The function of the FL, which is altered by mutation of phylogenetically conserved triplet base-pairs, may be enhancement of formation of a particular IRE stem-loop-protein interaction.


Subject(s)
Ferritins/biosynthesis , Iron/pharmacology , Protein Biosynthesis/drug effects , RNA, Messenger/genetics , Regulatory Sequences, Nucleic Acid/genetics , Animals , Base Sequence , Bleomycin/pharmacology , DNA Mutational Analysis , Erythrocytes , Ferritins/genetics , Gene Expression Regulation/drug effects , Iron-Regulatory Proteins , Molecular Sequence Data , Nucleic Acid Conformation , Phylogeny , RNA, Messenger/drug effects , RNA-Binding Proteins/metabolism , Rana catesbeiana , Receptors, Transferrin/biosynthesis , Ribonucleases/pharmacology
13.
J Thromb Haemost ; 2(1): 42-6, 2004 Jan.
Article in English | MEDLINE | ID: mdl-14717964

ABSTRACT

Low molecular weight heparin (LMWH) is efficacious in preventing recurrent thromboembolic events (TEs) in children. The efficacy of LMWH in resolving thrombus in children is, however, unknown and may differ from what has been observed in adults due to known differences in the hemostatic system. We reviewed the ultrasound (US) scanning reports of children treated with LMWH in order to determine the rate and predictors of thrombus resolution. Of 245 children consecutively treated for a non-cerebral TE with enoxaparin (Lovenox, Aventis Pharma Inc., QC, Canada) for at least 5 consecutive days, 190 (78%) had serial ultrasound available for analysis. The mean follow-up time was 7 months (median 3 months, range 3 days to 6.6 years). The rate of complete thrombus resolution was 101/190 (53%, 95% confidence interval 46.2-60.2%). On univariate analysis, arterial and non-occlusive thrombus had an increased rate of resolution when compared with venous and occlusive thrombus. Age at time of TE (neonates vs. non-neonates), location of TE, initial treatment (unfractionated heparin vs. LMWH) and dose of enoxaparin were not related to outcome. On multivariate analysis, type of vessel (vein vs. artery) and occlusion (occlusive vs. non-occlusive thrombus) independently predicted outcome. In children, the rate of complete thrombus resolution is similar to the rate in adults. The clinical significance of residual abnormal vessels, specifically to the occurrence of post-thrombotic syndrome and for the diagnosis of recurrence, needs to be explored in prospective studies.


Subject(s)
Enoxaparin/therapeutic use , Fibrinolytic Agents/therapeutic use , Thrombosis/drug therapy , Venous Thrombosis/drug therapy , Adolescent , Arteries/diagnostic imaging , Child , Child, Preschool , Female , Humans , Infant , Infant, Newborn , Longitudinal Studies , Male , Multivariate Analysis , Thrombosis/diagnostic imaging , Treatment Outcome , Ultrasonography , Venous Thrombosis/diagnostic imaging
14.
J Med Chem ; 43(22): 4328-31, 2000 Nov 02.
Article in English | MEDLINE | ID: mdl-11063627

ABSTRACT

beta-Lactam antibiotics act by acylating a serine hydroxyl group in the catalytic center of bacterial proteases. This requires, among other things, suitable reactivity of the lactam moiety. To evaluate the possible suitability of other lactam systems, kinetic studies were performed using the model reaction of lactams with hydroxide. Following the pace of the reaction by NMR, we found gamma-butyrolactam to be hydrolyzed considerably slower than beta-propiolactam. Surprisingly, delta-valerolactam and beta-propiolactam had the same reactivity. beta-Lactam antibiotics were more reactive than both by approximately a factor of 10(3). Medium-sized lactams were least susceptible to hydrolysis. The study highlights the as yet overlooked six-membered lactam ring as a promising vantage point for the development of new classes of antiinfectives and other serine protease inhibitors.


Subject(s)
Anti-Bacterial Agents/chemistry , Lactams/chemistry , Serine Proteinase Inhibitors/chemistry , Hydrolysis , Kinetics
15.
Biotechniques ; 30(4): 762-6, 768, 2001 Apr.
Article in English | MEDLINE | ID: mdl-11314258

ABSTRACT

The use of commercial microarrays is rapidly becoming the method of choice for profiling gene expression and assessing various disease states. Research Genetics has provided a series of biological and software tools to the research community for these analyses. The fidelity of data analysis using these tools is dependent on a series of well-defined reference control points in the array. During the course of our investigations, it became apparent that in some instances the reference control points that are required for analysis became lost in background noise. This effectively halted the analysis and the recovery of any information contained within that experiment. To recover this data and to increase analytical veracity, the simple strategy of superimposing a template of reference control points onto the experimental array was developed. The utility of this tool is established in this communication.


Subject(s)
Oligonucleotide Array Sequence Analysis/methods , Oligonucleotide Array Sequence Analysis/standards , Filtration/instrumentation , Genome, Human , Humans , Reference Standards , Reproducibility of Results
16.
J Histochem Cytochem ; 36(12): 1519-26, 1988 Dec.
Article in English | MEDLINE | ID: mdl-3057072

ABSTRACT

We performed in situ hybridization of myosin heavy-chain (MHC) mRNA on rabbit muscle using a biotin-labeled complementary RNA probe. An 1107-nucleotide fragment from an alpha-cardiac MHC cDNA was used to transcribe an RNA probe 97% similar to slow-twitch and 75% similar to fast-twitch sequences. Serial sections were used to identify slow-twitch fibers in medial gastrocnemius, soleus, and tibialis anterior by immunofluorescence of slow MHC and oxidative capacity by histochemistry. Slow-twitch fibers hybridized by the RNA probe stained heavily after detection with streptavidin-alkaline phosphatase (89% dark and 11% medium density). Fast-oxidative fibers stained intermediately (26% dark, 58% medium, and 16% light) and fast-glycolytic fibers stained lightly (12% medium and 88% light). Biotin-labeled probe and enzymatic detection allowed greater resolution of the subcellular location of the MHC mRNA, a distinct advantage over isotope labeling and autoradiography. A non-uniform distribution of MHC mRNA was recognized within an adult skeletal muscle fiber. High concentrations of MHC mRNA were found under the sarcolemma and between the myofibrils, suggesting the existence of a distribution mechanism. The combination of in situ hybridization and immunocytochemistry allows rapid subcellular localization of both MHC mRNA and its translated protein.


Subject(s)
Immunohistochemistry , Muscles/analysis , Myosins/genetics , Nucleic Acid Hybridization , RNA, Messenger/analysis , Animals , Biotin , Fluorescent Antibody Technique , RNA Probes , Rabbits , Ribonuclease, Pancreatic/metabolism , Sarcolemma/analysis , Tissue Distribution , Transcription, Genetic
17.
Environ Health Perspect ; 107(8): 681-5, 1999 Aug.
Article in English | MEDLINE | ID: mdl-10417368

ABSTRACT

DNA array technology makes it possible to rapidly genotype individuals or quantify the expression of thousands of genes on a single filter or glass slide, and holds enormous potential in toxicologic applications. This potential led to a U.S. Environmental Protection Agency-sponsored workshop titled "Application of Microarrays to Toxicology" on 7-8 January 1999 in Research Triangle Park, North Carolina. In addition to providing state-of-the-art information on the application of DNA or gene microarrays, the workshop catalyzed the formation of several collaborations, committees, and user's groups throughout the Research Triangle Park area and beyond. Potential application of microarrays to toxicologic research and risk assessment include genome-wide expression analyses to identify gene-expression networks and toxicant-specific signatures that can be used to define mode of action, for exposure assessment, and for environmental monitoring. Arrays may also prove useful for monitoring genetic variability and its relationship to toxicant susceptibility in human populations.


Subject(s)
Environmental Exposure/analysis , Environmental Monitoring/methods , Environmental Pollutants/toxicity , Genome , Sequence Analysis, DNA/methods , Gene Expression Regulation , Humans , Mutagenicity Tests/methods , Nucleic Acid Hybridization , Physical Chromosome Mapping
18.
Cell Stress Chaperones ; 2(2): 73-7, 1997 Jun.
Article in English | MEDLINE | ID: mdl-9250397

ABSTRACT

The dramatic transformations in nuclear content and cellular organization that occur during gametogenesis require unique regulation and execution of the mitotic and meiotic cell cycle, apoptotic cell death, DNA recombination and repair, and cellular differentiation. These processes are accompanied by the constitutive and developmentally regulated expression of a number of hsp70 genes encoding 70 kDa heat shock proteins (Hsp70), including several hsp70s whose expression is unique to male germ cells. Examining the expression and function of Hsp70s in germ cells has provided significant insights into mechanisms of hsp70 gene regulation and Hsp70 protein function, as well as the developmental processes of gametogenesis.


Subject(s)
Gametogenesis/physiology , HSP70 Heat-Shock Proteins/physiology , Animals , Female , HSP70 Heat-Shock Proteins/biosynthesis , Male
19.
Cell Stress Chaperones ; 4(3): 162-70, 1999 Sep.
Article in English | MEDLINE | ID: mdl-10547065

ABSTRACT

This review focuses on the expression and function of 70-kDa heat shock proteins (Hsp70s) during mammalian embryogenesis, though many features of embryogenesis and the developmental expression of Hsp70s are conserved between mammals and other vertebrates. A variety of Hsp70s are expressed from the point of zygotic gene activation in cleavage-stage embryos, through blastulation, implantation, gastrulation, neurulation, organogenesis, and on throughout fetal maturation. The regulation and patterns of hsp70 gene expression and the known and putative Hsp70 protein functions vary from constitutive and metabolic housekeeping to stress-inducible and embryo-protective roles. Understanding the genetic regulation and molecular function of Hsp70s has been pursued by developmental biologists interested in the control of gene expression in early embryos as well as reproductive toxicologists and teratologists interested in how Hsp70s protect embryos from the adverse effects of environmental exposures. These efforts have also been joined by those interested in the chaperone functions of Hsp70s, and this confluence of effort has yielded many advances in our understanding of Hsp70s during critical phases of embryonic development and cellular differentiation.


Subject(s)
Embryonic and Fetal Development , Gene Expression Regulation, Developmental , HSP70 Heat-Shock Proteins/physiology , Animals , Humans , Transcriptional Activation
20.
Cell Stress Chaperones ; 6(4): 326-36, 2001 Oct.
Article in English | MEDLINE | ID: mdl-11795469

ABSTRACT

Mammalian cells respond to environmental stress by activating heat shock transcription factors (eg, Hsf1) that regulate increased synthesis of heat shock proteins (Hsps). Hsps prevent the disruption of normal cellular mitosis, meiosis, or differentiation by environmental stressors. To further characterize this stress response, transformed wild-type Hsf1+/+ and mutant Hsf1-/- mouse embryonic fibroblasts (MEFs) were exposed to (1) lethal heat (45 degrees C, 60 minutes), (2) conditioning heat (43 degrees C, 30 minutes), or (3) conditioning followed by lethal heat. Western blot analysis demonstrated that only Hsf1+/+ MEFs expressed inducible Hsp70s and Hsp25 following conditioning or conditioning and lethal heat. Exposure of either Hsf1+/+ or Hsf1-/- MEFs to lethal heat resulted in cell death. However, if conditioning heat was applied 6 hours before lethal heat, more than 85% of Hsf1+/+ MEFs survived, and cells in G2/M transiently increased 3-fold. In contrast, conditioned Hsf1-/- MEFs neither survived lethal heat nor exhibited this G2/M accumulation. Coinfection with adenoviral Hsp70 and Hsp25 constructs did not fully recreate thermotolerance in either Hsf1+/+ or Hsf1-/- MEFs, indicating other Hsf1-mediated gene expression is required for complete thermotolerance. These results demonstrate the necessity of Hsf1-mediated gene expression for thermotolerance and the involvement of cell cycle regulation, particularly the G2/M transition, in this thermotolerant response.


Subject(s)
DNA-Binding Proteins/physiology , Heat-Shock Proteins/physiology , Heat-Shock Response , Transcription Factors/physiology , Animals , Cell Death , Cell Line, Transformed , Cell Survival , DNA-Binding Proteins/genetics , G2 Phase , Heat Shock Transcription Factors , Heat-Shock Proteins/genetics , Hot Temperature , Humans , Mice , Mitosis , Mutation , Time Factors , Transcription Factors/genetics
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