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1.
J Phycol ; 57(3): 780-796, 2021 06.
Article in English | MEDLINE | ID: mdl-33244748

ABSTRACT

The filamentous microalga Tribonema sp. (Stramenopiles, Xanthophyceae) plays an important role in shallow water polar (streams and seepages) and seasonally cold habitats in temperate regions (ponds). In these habitats, freezing and desiccation, and thus freeze-thawing and drying-rewetting cycles, are frequent. These regions produce visible biomass and are important components of low temperature-adapted communities. We characterized the annual cycles of a Tribonema cf. minus population in two habitats (seepage and stream) in the High Arctic, Svalbard. Seasonality, locality, and their combination (particularly changing environmental conditions) together with cultivation conditions of strains significantly affected their morphological characteristics. Morphological changes following hardening processes related to preparation for the winter period (transition from vegetative cells to akinete and/or pre-akinete) were recorded. Over the year, positive water temperatures (warmest 13.3°C) occurred for 5 months while negative (lowest temperature was -17.4°C) lasted for 7 months. In winter, there were two melt periods. Vitality staining protocol showed a high number of viable (77.4% and 53.8%) and dormant cells (1.7% and 4.1%; capable of growth and reproduction once suitable conditions return) in the winter seepage and stream, respectively. NPQ and OJIP chlorophyll fluorescence parameters revealed several hours recovery of photosynthesis (both field and control samples). During recovery, only minor or mild stress on photosynthesis was detected. FV /FM values (the photosynthetic efficiency of photosystem II in a dark-adapted state) in all field and control samples varied around 0.4. Tribonema cf. minus is capable of surviving winter Arctic conditions (perennial strategy).


Subject(s)
Stramenopiles , Arctic Regions , Ecosystem , Photosynthesis , Staining and Labeling , Svalbard
2.
Int J Syst Evol Microbiol ; 70(4): 2740-2749, 2020 Apr.
Article in English | MEDLINE | ID: mdl-32223837

ABSTRACT

Cyanobacterial strain ARC8 was isolated from seepage coming into the river Dracice, Frantiskov, Czech Republic, and was characterized using a polyphasic approach. Strain ARC8 showed a typical Nostoc-like morphology and in-depth morphological characterization indicated that it is a member of the genus Nostoc. Furthermore, in the 16S rRNA gene phylogeny inferred using Bayesian inference, maximum likelihood and neighbour joining methods, strain ARC8 clustered within the Nostoc sensu stricto clade. The phylogenetic distance and the positioning of strain ARC8 also indicated that it is a member of the genus Nostoc. Furthermore, the rbcL gene phylogeny along with the 16S-23S ITS secondary structure analysis also supported the findings from the 16S rRNA gene tree. In accordance with the International Code of Nomenclature for Algae, Fungi and Plants we describe a novel species of Nostoc with the name Nostoc neudorfense sp. nov.


Subject(s)
Nostoc/classification , Phylogeny , Rivers/microbiology , Bacterial Typing Techniques , Base Composition , Bayes Theorem , Czech Republic , DNA, Bacterial/genetics , Nostoc/isolation & purification , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA
3.
Microb Ecol ; 80(3): 559-572, 2020 Oct.
Article in English | MEDLINE | ID: mdl-32488483

ABSTRACT

Diatoms (Bacillariophyceae) are important primary producers in a wide range of hydro-terrestrial habitats in polar regions that are characterized by many extreme environmental conditions. Nevertheless, how they survive periods of drought and/or freeze remains unknown. A general strategy of microorganisms to overcome adverse conditions is dormancy, but morphologically distinct diatom resting stages are rare. This study aimed to evaluate the annual cycle of freshwater diatoms in the High Arctic (Central Spitsbergen) and provide an insight into their physiological cell status variability. The diversity and viability of diatom cells were studied in samples collected five times at four study sites, tracing the key events for survival (summer vegetative season, autumn dry-freezing, winter freezing, spring melting, summer vegetative season [again]). For viability evaluation, a multiparameter fluorescent staining was used in combination with light microscopy and allowed to reveal the physiological status at a single-cell level. The proportions of the cell categories were seasonally and locality dependent. The results suggested that a significant portion of vegetative cells survive winter and provide an inoculum for the following vegetative season. The ice thickness significantly influenced spring survival. The thicker the ice layer was, the more dead cells and fewer other stages were observed. The influence of the average week max-min temperature differences in autumn and winter was not proven.


Subject(s)
Diatoms/physiology , Life History Traits , Arctic Regions , Fresh Water , Seasons , Staining and Labeling , Svalbard
4.
J Phycol ; 56(2): 481-495, 2020 04.
Article in English | MEDLINE | ID: mdl-31833070

ABSTRACT

Due to their ecological, physiological, and molecular adaptations to low and varying temperatures, as well as varying seasonal irradiances, polar non-marine eukaryotic microalgae could be suitable for low-temperature biotechnology. Adaptations include the synthesis of compounds from different metabolic pathways that protect them against stress. Production of biological compounds and various biotechnological applications, for instance, water treatment technology, are of interest to humans. To select prospective strains for future low-temperature biotechnology in polar regions, temperature and irradiance of growth requirements (Q10 and Ea of 10 polar soil unicellular strains) were evaluated. In terms of temperature, three groups of strains were recognized: (i) cold-preferring where temperature optima ranged between 10.1 and 18.4°C, growth rate 0.252 and 0.344 · d-1 , (ii) cold- and warm-tolerating with optima above 10°C and growth rate 0.162-0.341 · d-1 , and (iii) warm-preferring temperatures above 20°C and growth rate 0.249-0.357 · d-1 . Their light requirements were low. Mean values Q10 for specific growth rate ranged from 0.7 to 3.1. The lowest Ea values were observed on cold-preferring and the highest in the warm-preferring strains. One strain from each temperature group was selected for PN and RD measurements. The PN :RD ratio of the warm-preferring strains was less affected by temperature similarly as Q10 and Ea. For future biotechnological applications, the strains with broad temperature tolerance (i.e., the group of cold- and warm-tolerating and warm-preferring strains) will be most useful.


Subject(s)
Microalgae , Photosynthesis , Prospective Studies , Soil , Temperature
5.
Microb Ecol ; 77(1): 136-147, 2019 Jan.
Article in English | MEDLINE | ID: mdl-29796758

ABSTRACT

Cyanobacteria are important colonizers of recently deglaciated proglacial soil but an in-depth investigation of cyanobacterial succession following glacier retreat has not yet been carried out. Here, we report on the successional trajectories of cyanobacterial communities in biological soil crusts (BSCs) along a 100-year deglaciation gradient in three glacier forefields in central Svalbard, High Arctic. Distance from the glacier terminus was used as a proxy for soil age (years since deglaciation), and cyanobacterial abundance and community composition were evaluated by epifluorescence microscopy and pyrosequencing of partial 16S rRNA gene sequences, respectively. Succession was characterized by a decrease in phylotype richness and a marked shift in community structure, resulting in a clear separation between early (10-20 years since deglaciation), mid (30-50 years), and late (80-100 years) communities. Changes in cyanobacterial community structure were mainly connected with soil age and associated shifts in soil chemical composition (mainly moisture, SOC, SMN, K, and Na concentrations). Phylotypes associated with early communities were related either to potentially novel lineages (< 97.5% similar to sequences currently available in GenBank) or lineages predominantly restricted to polar and alpine biotopes, suggesting that the initial colonization of proglacial soil is accomplished by cyanobacteria transported from nearby glacial environments. Late communities, on the other hand, included more widely distributed genotypes, which appear to establish only after the microenvironment has been modified by the pioneering taxa.


Subject(s)
Cyanobacteria/classification , Ice Cover/microbiology , Phylogeny , Soil Microbiology , Arctic Regions , Biodiversity , Cyanobacteria/genetics , DNA, Bacterial , Genotype , High-Throughput Nucleotide Sequencing , RNA, Ribosomal, 16S/genetics , Soil/chemistry , Svalbard
6.
Int J Syst Evol Microbiol ; 68(3): 851-859, 2018 Mar.
Article in English | MEDLINE | ID: mdl-29458669

ABSTRACT

With the advent of molecular phylogenetic methods, it has become possible to assess the bioversity of snow algae more accurately. In this study, we focused on a morphological, ultrastructural and taxonomic description of a new Chloromonas-like alga isolated from snow in the High Arctic (Svalbard). Light and transmission electron microscopy revealed broad ellipsoidal or ellipsoidal-cylindrical, occasionally spherical cells with a chloroplast without a pyrenoid, an inconspicuous eyespot and a papilla. The size difference and the aforementioned morphological traits clearly distinguished the alga from its closest counterparts within the genus Chloromonas. Moreover, we were able to cultivate the alga at both 5 and 20 °C, revealing the psychrotolerant nature of the strain. Phylogenetic analyses of the plastid rbcL and nuclear 18S rRNA gene showed that the alga is nested within a clade containing a number of psychrotolerant strains within the Chloromonadinia phylogroup (Chlorophyceae). In the rbcL phylogeny, the alga formed an independent lineage, sister to the freshwater species Chloromonas paraserbinowii. Comparisons of secondary structure models of a highly variable ITS2 rDNA marker showed support for a distinct species identity for the new strain. The ITS2 secondary structure of the new isolate differed from the closest matches 'Chlamydomonas' gerloffii and Choloromonas reticulata by three and five compensatory base changes, respectively. Considering the morphological and molecular differences from its closest relatives, a new psychrotolerant species from the Arctic, Choromonas arctica sp. nov., is proposed.


Subject(s)
Phylogeny , Snow , Volvocida/classification , DNA, Algal/genetics , DNA, Ribosomal Spacer/genetics , Plastids/genetics , RNA, Ribosomal, 18S/genetics , Sequence Analysis, DNA , Svalbard , Volvocida/genetics
7.
J Eukaryot Microbiol ; 65(6): 882-892, 2018 11.
Article in English | MEDLINE | ID: mdl-29752887

ABSTRACT

The traditional green algal genus Chloromonas accommodates mesophilic, cold-tolerant and cold-adapted microorganisms. In this paper, we studied a new strain isolated from a wet hummock meadow in the High Arctic. We used morphological, ultrastructural and molecular data to assess the taxonomic position and phylogenetic relationships of the new isolate. The observed morphological features generally corresponded to the cold-tolerant Chloromonas characteristics. However, ellipsoidal or wide ellipsoidal vegetative cells, a massive parietal cup-shaped chloroplast with a number of continuously connected lobes, a thick cell wall, a prominent hemispherical papilla and the anterior position of an oblong or round eyespot distinguished the alga from all previously described Chloromonas species. Analyses of rbcL and 18S rRNA genes showed that the new strain formed an independent lineage within a clade containing mesophilic and psychrotolerant Chloromonas species. Comparisons of secondary structure models of a highly variable ITS2 rDNA marker supported a separate species identity of the new isolate. Considering the morphological and molecular differences from its relatives, a new psychrotolerant species, Chloromonas svalbardensis, is proposed. Further, our results demonstrated the paraphyletic origin of Chloromonas within Chloromonadinia with genetically, morphologically and ecologically well-defined clades. We discuss a scenario of a possible Chloromonas split and revision.


Subject(s)
Chlorophyceae/classification , Chlorophyceae/cytology , Chlorophyceae/genetics , Phylogeny , Arctic Regions , Cell Wall/ultrastructure , Chlorophyceae/physiology , Chloroplasts/ultrastructure , DNA, Plant/analysis , DNA, Ribosomal/genetics , Genes, Plant/genetics , Norway , RNA, Ribosomal, 18S/genetics , Ribulose-Bisphosphate Carboxylase/genetics , Snow
8.
Extremophiles ; 21(1): 187-200, 2017 Jan.
Article in English | MEDLINE | ID: mdl-27888351

ABSTRACT

The aim of this study was to assess the phylogenetic relationships, ecology and ecophysiological characteristics of the dominant planktic algae in ice-covered lakes on James Ross Island (northeastern Antarctic Peninsula). Phylogenetic analyses of 18S rDNA together with analysis of ITS2 rDNA secondary structure and cell morphology revealed that the two strains belong to one species of the genus Monoraphidium (Chlorophyta, Sphaeropleales, Selenastraceae) that should be described as new in future. Immotile green algae are thus apparently capable to become the dominant primary producer in the extreme environment of Antarctic lakes with extensive ice-cover. The strains grew in a wide temperature range, but the growth was inhibited at temperatures above 20 °C, indicating their adaptation to low temperature. Preferences for low irradiances reflected the light conditions in their original habitat. Together with relatively high growth rates (0.4-0.5 day-1) and unprecedently high content of polyunsaturated fatty acids (PUFA, more than 70% of total fatty acids), it makes these isolates interesting candidates for biotechnological applications.


Subject(s)
Biodiversity , Chlorophyta/classification , Ice Cover , Phytoplankton/isolation & purification , Adaptation, Physiological , Antarctic Regions , Chlorophyta/genetics , Chlorophyta/metabolism , Fatty Acids, Unsaturated/metabolism , Lakes , Phytoplankton/classification , Phytoplankton/genetics , Phytoplankton/metabolism , RNA, Ribosomal, 18S/genetics
9.
Microb Ecol ; 71(4): 887-900, 2016 May.
Article in English | MEDLINE | ID: mdl-26841797

ABSTRACT

Cyanobacteria form extensive macroscopic mats in shallow freshwater environments in the High Arctic and Antarctic. In these habitats, the communities are exposed to seasonal freezing and desiccation as well as to freeze-thawing and drying-rewetting cycles. Here, we characterized the annual cycles of two Phormidium communities in very shallow seepages located in central Svalbard. We observed the structure of the communities and the morphology, ultrastructure, metabolic activity, and viability of filaments and single cells. The communities overwintered as frozen mats, which were formed by long filaments enclosed in thick multilayered polysaccharide sheaths. No morphologically and/or ultrastructurally distinct spore-like cells were produced for surviving the winter, and the winter survival of the communities was not provided by a few resistant cells, which did not undergo visible morphological and ultrastructural transformations. Instead, a high proportion of cells in samples (85%) remained viable after prolonged freezing. The sheaths were the only morphological adaption, which seemed to protect the trichomes from damage due to freezing and freeze-associated dehydration. The cells in the overwintering communities were not dormant, as all viable cells rapidly resumed respiration after thawing, and their nucleoids were not condensed. During the whole vegetative season, defined by the presence of water in a liquid state, the communities were constantly metabolically active and contained <1% of dead and injured cells. The morphology and ultrastructure of the cells remained unaltered during observations throughout the year, except for light-induced changes in thylakoids. The dissemination events are likely to occur in spring as most of the trichomes were split into short fragments (hormogonia), a substantial proportion of which were released into the environment by gliding out of their sheaths, as well as by cracking and dissolving their sheaths. The short fragments subsequently grew longer and gradually produced new polysaccharide sheaths.


Subject(s)
Cyanobacteria/physiology , Ecosystem , Fresh Water/microbiology , Antarctic Regions , Arctic Regions , Cyanobacteria/growth & development , Cyanobacteria/metabolism , Cyanobacteria/ultrastructure , Freezing , Fresh Water/chemistry , Microbial Viability , Seasons , Svalbard , Temperature , Water Microbiology
10.
Front Microbiol ; 15: 1316633, 2024.
Article in English | MEDLINE | ID: mdl-38380088

ABSTRACT

Understanding the relation between terrestrial microorganisms and edaphic factors in the Antarctic can provide insights into their potential response to environmental changes. Here we examined the composition of bacterial and micro-eukaryotic communities using amplicon sequencing of rRNA genes in 105 soil samples from the Sør Rondane Mountains (East Antarctica), differing in bedrock or substrate type and associated physicochemical conditions. Although the two most widespread taxa (Acidobacteriota and Chlorophyta) were relatively abundant in each sample, multivariate analysis and co-occurrence networks revealed pronounced differences in community structure depending on substrate type. In moraine substrates, Actinomycetota and Cercozoa were the most abundant bacterial and eukaryotic phyla, whereas on gneiss, granite and marble substrates, Cyanobacteriota and Metazoa were the dominant bacterial and eukaryotic taxa. However, at lower taxonomic level, a distinct differentiation was observed within the Cyanobacteriota phylum depending on substrate type, with granite being dominated by the Nostocaceae family and marble by the Chroococcidiopsaceae family. Surprisingly, metazoans were relatively abundant according to the 18S rRNA dataset, even in samples from the most arid sites, such as moraines in Austkampane and Widerøefjellet ("Dry Valley"). Overall, our study shows that different substrate types support distinct microbial communities, and that mineral soil diversity is a major determinant of terrestrial microbial diversity in inland Antarctic nunataks and valleys.

11.
Microorganisms ; 11(8)2023 Jul 28.
Article in English | MEDLINE | ID: mdl-37630492

ABSTRACT

Microorganisms inhabiting Antarctic biocrusts develop several strategies to survive extreme environmental conditions such as severe cold and drought. However, the knowledge about adaptations of biocrusts microorganisms are limited. Here, we applied metagenomic sequencing to study biocrusts from east Antarctica. Biocrusts were dominated by cyanobacteria, actinobacteria and proteobacteria. Furthermore, the results provided insights into the presence and abundance of cold shock proteins (Csp), cold shock domain A proteins (CsdA), and antifreeze proteins (AFP) in these extreme environments. The metagenomic analysis revealed a high number of CsdA across the samples. The majority of the Csp recorded in the studied biocrusts were Csp A, C, and E. In addition, CsdA, Csp, and AFP primarily originated from proteobacteria and actinobacteria.

12.
Front Microbiol ; 14: 1323148, 2023.
Article in English | MEDLINE | ID: mdl-38249463

ABSTRACT

The Antarctic terrestrial environment harbors a diverse community of microorganisms, which have adapted to the extreme conditions. The aim of this study was to describe the composition of microbial communities in a diverse range of terrestrial environments (various biocrusts and soils, sands from ephemeral wetlands, biofilms, endolithic and hypolithic communities) in East Antarctica using both molecular and morphological approaches. Amplicon sequencing of the 16S rRNA gene revealed the dominance of Chloroflexi, Cyanobacteria and Firmicutes, while sequencing of the 18S rRNA gene showed the prevalence of Alveolata, Chloroplastida, Metazoa, and Rhizaria. This study also provided a comprehensive assessment of the microphototrophic community revealing a diversity of cyanobacteria and eukaryotic microalgae in various Antarctic terrestrial samples. Filamentous cyanobacteria belonging to the orders Oscillatoriales and Pseudanabaenales dominated prokaryotic community, while members of Trebouxiophyceae were the most abundant representatives of eukaryotes. In addition, the co-occurrence analysis showed a prevalence of positive correlations with bacterial taxa frequently co-occurring together.

13.
FEMS Microbiol Ecol ; 99(10)2023 09 19.
Article in English | MEDLINE | ID: mdl-37660279

ABSTRACT

Substrate geochemistry is an important factor influencing early microbial development after glacial retreat on nutrient-poor geological substrates in the High Arctic. It is often difficult to separate substrate influence from climate because study locations are distant. Our study in the retreating Nordenskiöldbreen (Svalbard) is one of the few to investigate biogeochemical and microbial succession in two adjacent forefields, which share the same climatic conditions but differ in their underlying geology. The northern silicate forefield evolved in a classical chronosequence, where most geochemical and microbial parameters increased gradually with time. In contrast, the southern carbonate forefield exhibited high levels of nutrients and microbial biomass at the youngest sites, followed by a significant decline and then a gradual increase, which caused a rearrangement in the species and functional composition of the bacterial and fungal communities. This shuffling in the early stages of succession suggests that high nutrient availability in the bedrock could have accelerated early soil succession after deglaciation and thereby promoted more rapid stabilization of the soil and production of higher quality organic matter. Most chemical parameters and bacterial taxa converged with time, while fungi showed no clear pattern.


Subject(s)
Ice Cover , Soil , Soil/chemistry , Svalbard , Ice Cover/microbiology , Soil Microbiology , Bacteria/genetics , Minerals
14.
Front Microbiol ; 13: 1048522, 2022.
Article in English | MEDLINE | ID: mdl-36590427

ABSTRACT

A wide range of microorganisms inhabit biocrusts of arctic and sub-arctic regions. These taxa live and thrive under extreme conditions and, moreover, play important roles in biogeochemical cycling. Nevertheless, their diversity and abundance remain ambiguous. Here, we studied microbial community composition in biocrusts from Svalbard and Iceland using amplicon sequencing and epifluorescence microscopy. Sequencing of 16S rRNA gene revealed the dominance of Chloroflexi in the biocrusts from Iceland and Longyearbyen, and Acidobacteria in the biocrusts from Ny-Ålesund and South Svalbard. Within the 18S rRNA gene sequencing dataset, Chloroplastida prevailed in all the samples with dominance of Trebouxiophyceae in the biocrusts from Ny-Ålesund and Embryophyta in the biocrusts from the other localities. Furthermore, cyanobacterial number of cells and biovolume exceeded the microalgal in the biocrusts. Community compositions in the studied sites were correlated to the measured chemical parameters such as conductivity, pH, soil organic matter and mineral nitrogen contents. In addition, co-occurrence analysis showed the dominance of positive potential interactions and, bacterial and eukaryotic taxa co-occurred more frequently together.

15.
Cryo Letters ; 29(1): 27-8, 2008.
Article in English | MEDLINE | ID: mdl-18392286

ABSTRACT

Polar isolates of four chlorococcal microalgae originating from the Arctic and Antarctica withstand cryopreservation using encapsulation-dehydration. Viability assessments, which initially used chloroplhyll fluorescence (Kautsky) induction kinetics, revealed that all strains suffered photosynthetic impairment during early post-cryopreservation recovery. This cryoinjury was reversible, as indicated by cell regrowth in three of the four strains. Lack of growth in the fourth isolate was due to contaminating bacteria rather than cryogenic factors.


Subject(s)
Cold Climate , Cryopreservation/methods , Eukaryota
16.
Syst Appl Microbiol ; 41(4): 363-373, 2018 Jul.
Article in English | MEDLINE | ID: mdl-29452715

ABSTRACT

Molecular and morphological methods were applied to study cyanobacterial community composition in biological soil crusts (BSCs) from four areas (two nunataks and two ridges) in the Sør Rondane Mountains, Antarctica. The sampling sites serve as control areas for open top chambers (OTCs) that were put in place in 2010 at the time of sample collection and will be compared with BSC samples taken from the OTCs in the future. Cyanobacterial cell biovolume was estimated using epifluorescence microscopy, which revealed the dominance of filamentous cyanobacteria in all studied sites except the Utsteinen ridge, where unicellular cyanobacteria were the most abundant. Cyanobacterial diversity was studied by a combination of molecular fingerprinting methods based on the 16S rRNA gene (denaturing gradient gel electrophoresis (DGGE) and 454 pyrosequencing) using cyanobacteria-specific primers. The number of DGGE sequences obtained per site was variable and, therefore, a high-throughput method was subsequently employed to improve the diversity coverage. Consistent with previous surveys in Antarctica, both methods showed that filamentous cyanobacteria, such as Leptolyngbya sp., Phormidium sp. and Microcoleus sp., were dominant in the studied sites. In addition, the studied localities differed in substrate type, climatic conditions and soil parameters, which probably resulted in differences in cyanobacterial community composition. Furthermore, the BSC growing on gneiss pebbles had lower cyanobacterial abundances than BSCs associated with granitic substrates.


Subject(s)
Cyanobacteria , Ice Cover/microbiology , Soil Microbiology , Antarctic Regions , Biodiversity , Cyanobacteria/classification , Cyanobacteria/genetics , Cyanobacteria/isolation & purification , DNA, Bacterial/genetics , Ecosystem , Molecular Typing , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA
17.
FEMS Microbiol Ecol ; 59(2): 265-73, 2007 Feb.
Article in English | MEDLINE | ID: mdl-17313577

ABSTRACT

The seasonal and diel dynamics of the physiological state and photosynthetic activity of the snow alga Chlamydomonas nivalis were investigated in a snowfield in Svalbard. The snow surface represents an environment with very high irradiation intensities along with stable low temperatures close to freezing point. Photosynthetic activity was measured using pulse amplitude modulation fluorometry. Three types of cell (green biflagellate vegetative cells, orange spores clustered by means of mucilaginous sheaths, and purple spores with thick cell walls) were found, all of them photosynthetically active. The pH of snow ranged between 5.0 and 7.5, and the conductivity ranged between 5 and 75 microS cm(-1). The temperature of snow was stable (-0.1 to +0.1 degrees C), and the incident radiation values ranged from 11 to 1500 micromol photons m(-2) s(-1). The photosynthetic activity had seasonal and diel dynamics. The Fv/Fm values ranged between 0.4 and 0.7, and generally declined over the course of the season. A dynamic response of Fv/Fm to the irradiance was recorded. According to the saturating photon fluence values Ek, the algae may have obtained saturating light as deep as 3 cm in the snow when there were higher-light conditions, whereas they were undersaturated at prevalent low light even if on the surface.


Subject(s)
Chlamydomonas/physiology , Photosynthesis/physiology , Seasons , Snow/microbiology , Animals , Arctic Regions , Chlamydomonas/isolation & purification , Darkness , Fluorometry/methods , Light , Snow/chemistry
18.
FEMS Microbiol Ecol ; 59(2): 366-76, 2007 Feb.
Article in English | MEDLINE | ID: mdl-17313583

ABSTRACT

Selected strains of filamentous Phormidium-like cyanobacteria isolated from two Arctic regions (Ellesmere Island, High Canadian Arctic and Svalbard) and from Antarctica (Antarctic peninsula, South Shetland Islands and South Orkney Islands) were studied. The polyphasic approach used included phenotypic observations of morphological features and genotypic analyses (restriction fragment length polymorphism of 16S rRNA gene, internal transcribed space, 16S rRNA gene sequence analysis). Although genotypes generally correspond to observed morphotypes, the genetic analyses revealed a high degree of biodiversity that could not be unveiled using solely morphological evaluations. According to the phylogenetic analysis, the three clones were divided into two major clades, indicating that the phylogenetic distance between Arct-Ph5/Ant-Ph68 and Ant-Ph58 was so large they belonged to different genera. The polyphyletic position of strains of the genus Phormidium was confirmed by this study, attesting the need to entirely revise classification in this taxon in the future.


Subject(s)
Bacterial Typing Techniques , Cyanobacteria/classification , Antarctic Regions , Arctic Regions , Cyanobacteria/genetics , Cyanobacteria/ultrastructure , DNA, Bacterial/analysis , DNA, Ribosomal Spacer/analysis , Genes, rRNA , Microscopy/methods , Molecular Sequence Data , Phylogeny , Polymorphism, Restriction Fragment Length , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA
19.
Cryo Letters ; 28(5): 359-76, 2007.
Article in English | MEDLINE | ID: mdl-18075705

ABSTRACT

Two cryopreservation methods, colligative cryoprotection coupled with controlled cooling and vitrification-based, encapsulation-dehydration were validated by five members of the EU research infrastructure consortium, COBRA, and two independent external validators. The test strain Chlorella vulgaris SAG 211-11b was successfully cryopreserved using two-step cooling employing passive (Mr Frosty) and Controlled Rate Freezers (CRF) attaining the desired recovery target within 15% of the median viability level (94%). Significant differences (p < 0.05) between cooling regimes were observed where Mr Frosty was more variable (Inter-Quartile Range being 21.5%, versus 13.0% for CRF samples). Viability assessment using fluorescein diacetate gave significantly (P < 0.0001) higher survival than growth in agar with median values being 96% and 89%, respectively. On employing encapsulation-dehydration, greater variability between some validators was observed, with six labs observing recovery in 100% of the beads (84-95% of cells surviving) and one lab observing survival in 80% of the treated beads. Bead disruption followed by algal growth in agar was considered the most reliable and accurate method of assessing cell survival for encapsulation-dehydration.


Subject(s)
Cells, Cultured/cytology , Cryopreservation/methods , Eukaryota/cytology , Cell Survival , Cryoprotective Agents , In Vitro Techniques
20.
Environ Sci Pollut Res Int ; 23(10): 10124-37, 2016 May.
Article in English | MEDLINE | ID: mdl-26867690

ABSTRACT

The contents of elements in the top soil (upper 5 cm) and deeper soil (5 to 10 cm) layers and in Salix polaris (leaves and stem) from the former Soviet mining town of Pyramiden and its close vicinity on the Svalbard archipelago were determined. The analyses covered major and trace elements, including heavy metals, in order to describe anthropogenic impacts related to the management of the mining town. Soil samples and plant tissues were analysed from 13 localities across and close to town vicinity. The plant ground cover of all sampling points was determined, and plant tissues (leaves and stem) were collected. Higher contents of Cd (3-11 mg kg(-1)) and Mo (11-33 mg kg(-1)) were detected in the soils. With relation to the world average concentration of metals in soils, the geo-accumulation indexes (Igeo) and the level of pollution of the analysed soils were classified into seven pollution grades. The soils of the studied localities were usually unpolluted (grade 1) when analysed for metals, with the soil pollution grades 4-6 identified only for Cd and Mo (moderately to strongly polluted). In Salix polaris, excessive amounts of Fe (60-1520 mg kg(-1)), Zn (80-1050 mg kg(-1)), Cd (0.2-5.5 mg kg(-1)) and Cr (0-3.6 mg kg(-1)) were observed. The Igeo of these elements, compared with values considered sufficient for plants, showed pollution grades from 2 to 6. The pollution load index (PLI) ranged between 0.49 and 1.01. Only one locality could be considered polluted having a PLI higher than 1. Plant/soil transfer factors (TF) for trace metals decreased in the following order: Zn > Cu > Cd > Mn > Ni > As > Mo > Pb > Co > Al > Cr > Fe. The principal contribution of this study consists in the assessment of the contamination of soils and plants by toxic heavy metals in an otherwise pristine environment of the Svalbard archipelago related to urban/industrial activities.


Subject(s)
Arsenic/analysis , Metals/analysis , Salix , Soil Pollutants/analysis , Environmental Monitoring , Mining , Plant Leaves/chemistry , Plant Stems/chemistry , Svalbard
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