Search details
1.
KaMRaT: a C++ toolkit for k-mer count matrix dimension reduction.
Bioinformatics
; 40(3)2024 Mar 04.
Article
in English
| MEDLINE | ID: mdl-38444086
2.
Transinteractome analysis reveals distinct niche requirements for isotype-based plasma cell subsets in the bone marrow.
Eur J Immunol
; 53(9): e2250334, 2023 09.
Article
in English
| MEDLINE | ID: mdl-37377335
3.
Nonsense-Mediated Decay Restricts LncRNA Levels in Yeast Unless Blocked by Double-Stranded RNA Structure.
Mol Cell
; 61(3): 379-392, 2016 Feb 04.
Article
in English
| MEDLINE | ID: mdl-26805575
4.
Rfam 14: expanded coverage of metagenomic, viral and microRNA families.
Nucleic Acids Res
; 49(D1): D192-D200, 2021 01 08.
Article
in English
| MEDLINE | ID: mdl-33211869
5.
2-kupl: mapping-free variant detection from DNA-seq data of matched samples.
BMC Bioinformatics
; 22(1): 304, 2021 Jun 05.
Article
in English
| MEDLINE | ID: mdl-34090332
6.
REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets.
Bioinformatics
; 36(Suppl_1): i177-i185, 2020 07 01.
Article
in English
| MEDLINE | ID: mdl-32657392
7.
Landscape of the Noncoding Transcriptome Response of Two Arabidopsis Ecotypes to Phosphate Starvation.
Plant Physiol
; 183(3): 1058-1072, 2020 07.
Article
in English
| MEDLINE | ID: mdl-32404413
8.
Reference-free transcriptome signatures for prostate cancer prognosis.
BMC Cancer
; 21(1): 394, 2021 Apr 12.
Article
in English
| MEDLINE | ID: mdl-33845808
9.
Accurate characterization of Escherichia coli tRNA modifications with a simple method of deep-sequencing library preparation.
RNA Biol
; 18(1): 33-46, 2021 01.
Article
in English
| MEDLINE | ID: mdl-32618488
10.
Identification of RNAs bound by Hfq reveals widespread RNA partners and a sporulation regulator in the human pathogen Clostridioides difficile.
RNA Biol
; 18(11): 1931-1952, 2021 11.
Article
in English
| MEDLINE | ID: mdl-33629931
11.
Native elongating transcript sequencing reveals global anti-correlation between sense and antisense nascent transcription in fission yeast.
RNA
; 24(2): 196-208, 2018 02.
Article
in English
| MEDLINE | ID: mdl-29114019
12.
The conserved regulatory RNA RsaE down-regulates the arginine degradation pathway in Staphylococcus aureus.
Nucleic Acids Res
; 46(17): 8803-8816, 2018 09 28.
Article
in English
| MEDLINE | ID: mdl-29986060
13.
CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins.
Nucleic Acids Res
; 46(W1): W246-W251, 2018 07 02.
Article
in English
| MEDLINE | ID: mdl-29790974
14.
A benchmark study of scoring methods for non-coding mutations.
Bioinformatics
; 34(10): 1635-1641, 2018 05 15.
Article
in English
| MEDLINE | ID: mdl-29340599
15.
Revisiting the structure/function relationships of H/ACA(-like) RNAs: a unified model for Euryarchaea and Crenarchaea.
Nucleic Acids Res
; 43(16): 7744-61, 2015 Sep 18.
Article
in English
| MEDLINE | ID: mdl-26240384
16.
In plants, decapping prevents RDR6-dependent production of small interfering RNAs from endogenous mRNAs.
Nucleic Acids Res
; 43(5): 2902-13, 2015 Mar 11.
Article
in English
| MEDLINE | ID: mdl-25694514
17.
A Dual Model for Prioritizing Cancer Mutations in the Non-coding Genome Based on Germline and Somatic Events.
PLoS Comput Biol
; 11(11): e1004583, 2015 Nov.
Article
in English
| MEDLINE | ID: mdl-26588488
18.
Detection of generic differential RNA processing events from RNA-seq data.
RNA Biol
; 13(1): 59-67, 2016.
Article
in English
| MEDLINE | ID: mdl-26849165
19.
An assessment of bacterial small RNA target prediction programs.
RNA Biol
; 12(5): 509-13, 2015.
Article
in English
| MEDLINE | ID: mdl-25760244
20.
A universal RNA structural motif docking the elbow of tRNA in the ribosome, RNAse P and T-box leaders.
Nucleic Acids Res
; 41(10): 5494-502, 2013 May 01.
Article
in English
| MEDLINE | ID: mdl-23580544