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1.
Br J Cancer ; 105(1): 162-9, 2011 Jun 28.
Article in English | MEDLINE | ID: mdl-21559014

ABSTRACT

BACKGROUND: Carriers of germline mutations in DNA mismatch repair (MMR) genes have a high risk of colorectal cancer (CRC), but the modifiers of this risk are not well established. We estimated an association between body mass index (BMI) in early adulthood and subsequent risk of CRC for carriers and, as a comparison, estimated the association for non-carriers. METHODS: A weighted Cox regression was used to analyse height and weight at 20 years reported by 1324 carriers of MMR gene mutations (500 MLH1, 648 MSH2, 117 MSH6 and 59 PMS2) and 1219 non-carriers from the Colon Cancer Family Registry. RESULTS: During 122,304 person-years of observation, we observed diagnoses of CRC for 659 carriers (50%) and 36 non-carriers (3%). For carriers, the risk of CRC increased by 30% for each 5 kg m(-2) increment in BMI in early adulthood (hazard ratio, HR: 1.30; 95% confidence interval, CI: 1.08-1.58; P=0.01), and increased by 64% for non-carriers (HR: 1.64; 95% CI: 1.02-2.64; P=0.04) after adjusting for sex, country, cigarette smoking and alcohol drinking (and the MMR gene that was mutated in carriers). The difference in HRs for carriers and non-carriers was not statistically significant (P=0.50). For MLH1 and PMS2 (MutLα heterodimer) mutation carriers combined, the corresponding increase was 36% (HR: 1.36; 95% CI: 1.05-1.76; P=0.02). For MSH2 and MSH6 (MutSα heterodimer) mutation carriers combined, the HR was 1.26 (95% CI: 0.96-1.65; P=0.09). There was no significant difference between the HRs for MutLα and MutSα heterodimer carriers (P=0.56). CONCLUSION: Body mass index in early adulthood is positively associated with risk of CRC for MMR gene mutation carriers and non-carriers.


Subject(s)
Adaptor Proteins, Signal Transducing/genetics , Adenosine Triphosphatases/genetics , Body Mass Index , Colorectal Neoplasms/genetics , DNA Repair Enzymes/genetics , DNA-Binding Proteins/genetics , Germ-Line Mutation/genetics , MutS Homolog 2 Protein/genetics , Nuclear Proteins/genetics , Adult , DNA Mismatch Repair , Female , Follow-Up Studies , Heterozygote , Humans , Male , Middle Aged , Mismatch Repair Endonuclease PMS2 , MutL Protein Homolog 1 , Prognosis , Risk Factors , Young Adult
3.
J Natl Cancer Inst ; 78(5): 911-8, 1987 May.
Article in English | MEDLINE | ID: mdl-3472000

ABSTRACT

A complex segregation analysis was conducted of breast cancer in 200 families with bilateral breast cancer. Results for two analyses are presented. The first analysis considered only premenopausal cases of breast cancer as affected. The results indicate that mendelian transmission of a single locus is not sufficient to explain the distribution of premenopausal breast cancer seen. A mixed model, i.e., a major locus plus other transmission (genetic and/or cultural), is necessary to explain the distribution. The second analysis added postmenopausal cases of breast cancer to the premenopausal ones, thus considering all breast cancer cases to be affected with the same disorder. The all-cases analysis is unable to reject a mixed model with no generation differences in heritability when tested against the general model, which allows for generation differences (i.e., the likelihoods for the two models were not significantly different). Approaches to studying etiologic heterogeneity in segregation analysis and results of other segregation analyses of breast cancer are presented.


Subject(s)
Breast Neoplasms/genetics , Breast Neoplasms/etiology , Chromosome Mapping , Female , Humans , Menopause , Probability
4.
J Natl Cancer Inst ; 89(2): 166-70, 1997 Jan 15.
Article in English | MEDLINE | ID: mdl-8998186

ABSTRACT

BACKGROUND: Prostate cancer is an increasingly common disease for which there are few well-established risk factors. Family history data suggest a genetic component; however, the majority of prostate cancer cases cannot be explained by a single-gene model. Prostate cell division is influenced by two steroid hormones, testosterone and vitamin D, the action of each being mediated by its respective receptor. The genes for the two receptors are candidates in a multigenic model for prostate cancer susceptibility. PURPOSE: We examined genetic polymorphisms in two steroid receptors, the androgen receptor (AR) and the vitamin D receptor (VDR), in a case-control pilot study of prostate cancer. METHODS: Fifty-seven non-Hispanic white case patients with prostate cancer and 169 non-Hispanic white control subjects were genotyped for a previously described microsatellite (CAG repeats) in the AR gene and for a newly discovered poly-A microsatellite in the 3'-untranslated region (3'UTR) of the VDR gene. To compare genotypes with respect to prostate cancer risk, we estimated odds ratios (ORs) by using logistic regression. ORs were also estimated separately for advanced and localized cases of disease. All P values resulted from two-sided tests. RESULTS: Both the AR and the VDR polymorphisms were associated, individually and after mutual adjustment, with prostate cancer. Adjusted ORs (95% confidence intervals [CIs]) for prostate cancer were 2.10 (95% CI = 1.11-3.99) for individuals carrying an AR CAG allele with fewer than 20 repeats versus an allele with 20 or more repeats and 4.61 (95% CI = 1.34-15.82) for individuals carrying at least one long (A18 to A22) VDR poly-A allele versus two short (A14 to A17) poly-A alleles. For both the AR and VDR genes, the at-risk genotypes were more strongly associated with advanced disease than with localized disease. CONCLUSIONS: In this pilot study, genetic variation in both the VDR and the AR genes was associated with prostate cancer, and both genes appear to preferentially confer risk for advanced disease. These two genetic risk factors, if confirmed, are among the strongest risk factors yet identified for prostate cancer. IMPLICATIONS: These results are consistent with a multigenic model of prostate cancer susceptibility. On the basis of the joint effect of several genetic loci, one might ultimately be able to construct a risk profile to predict advanced disease, so that men whose disease is unlikely to progress to an advanced stage can possibly be spared aggressive treatment.


Subject(s)
Genetic Predisposition to Disease , Polymorphism, Genetic , Prostatic Neoplasms/genetics , Receptors, Androgen/genetics , Receptors, Calcitriol/genetics , Alleles , Case-Control Studies , Disease Susceptibility/metabolism , Genotype , Humans , Logistic Models , Male , Neoplasm Staging , Odds Ratio , Pilot Projects , Prostatic Neoplasms/metabolism , Prostatic Neoplasms/pathology , Risk , Risk Factors , Trinucleotide Repeats/genetics
5.
J Natl Cancer Inst ; 90(1): 57-62, 1998 Jan 07.
Article in English | MEDLINE | ID: mdl-9428784

ABSTRACT

BACKGROUND: Recent evidence suggests that folic acid (and derivatives) could contribute to the protective effect of fruits and vegetables against the risk of large-bowel cancer. Other evidence indicates that alcohol drinking and cigarette smoking may impair the biologic actions of folate. We used data from an adenoma prevention trial to investigate the occurrence of colorectal adenomas (possible precursors of colorectal cancer) in association with folate intake, alcohol consumption, and cigarette smoking. METHODS: Patients with at least one recent large-bowel adenoma were followed with colonoscopy 1 year and 4 years after their qualifying colon examinations. Adenomas detected after the year 1 examination were used as end points. A food-frequency questionnaire was administered at study entry and at study completion; nutrient intake at study entry was used in this analysis. All statistical tests were two-sided. RESULTS: After adjustment for caloric intake, dietary folate had a significant protective association with the risk of recurrence of large-bowel adenoma (P for trend = .04). However, this inverse association was attenuated by further adjustment for intake of dietary fiber and fat. Use of folate supplements was not associated with a reduction in risk. Alcohol intake (seven or more drinks/week) was associated with increased risk (odds ratio = 2.04; 95% confidence interval = 1.28-3.26). Cigarette smoking, even smoking for long duration, was not related to adenoma recurrence. CONCLUSIONS: These data provide only modest support for previous findings suggesting beneficial effects of folate on colorectal adenoma risk. We find no evidence that cigarette smoking increases risk. These findings do suggest a substantial increase in risk with alcohol consumption.


Subject(s)
Adenoma/etiology , Alcohol Drinking/adverse effects , Anticarcinogenic Agents/pharmacology , Colorectal Neoplasms/etiology , Folic Acid/pharmacology , Smoking/adverse effects , Aged , Anticarcinogenic Agents/administration & dosage , Clinical Trials as Topic , Female , Folic Acid/administration & dosage , Humans , Male , Middle Aged , Multicenter Studies as Topic , Risk , Risk Factors
6.
Cancer Res ; 57(17): 3678-81, 1997 Sep 01.
Article in English | MEDLINE | ID: mdl-9288771

ABSTRACT

We conducted a study to determine whether the risk of breast cancer associated with oral contraceptive (OC) use is higher in women with BRCA1/BRCA2 mutations than in other women by examining whether breast cancer patients with these mutations were more likely than breast cancer patients without mutations in BRCA1/BRCA2 to have used OCs. We tested for BRCA1 185delAG and 5382insC and BRCA2 6174delT mutations in a population-based sample of 50 young Ashkenazi Jewish breast cancer patients. Nine patients (18%) had a BRCA1 mutation, and five patients (10%) had a BRCA2 mutation. Long-term OC use (>48 months) before a first full-term pregnancy was associated with an elevated risk of being classified as a mutBRCA carrier (odds ratio, 7.8; trend, P = 0.004). The results suggest that OC use may increase the risk of breast cancer more in mutBRCA carriers than in noncarriers; however, they must be interpreted with caution given the small sample size.


Subject(s)
Breast Neoplasms/etiology , Contraceptives, Oral/adverse effects , Genes, Tumor Suppressor/genetics , Mutation/genetics , Adult , Age Factors , Breast Neoplasms/chemically induced , Breast Neoplasms/ethnology , Breast Neoplasms/genetics , Exercise , Female , Genes, BRCA1/genetics , Heterozygote , Humans , Jews/genetics , Risk Factors
7.
Cancer Res ; 53(21): 5083-6, 1993 Nov 01.
Article in English | MEDLINE | ID: mdl-8221639

ABSTRACT

Recent reports suggest that subjects who are heterozygous for the ataxia-telangiectasia gene are at increased risk of breast cancer. We conducted linkage analyses of 64 families with premenopausal bilateral breast cancer using DRD2, a marker linked to the ataxia-telangiectasia locus at 11q22-23. We assumed a model with dominant transmission of breast cancer. Lod scores summed over all families provided strong evidence against tight linkage (e.g., a lod score of -6.08 at theta = 0.00001), although a single family provides suggestive evidence of tight linkage to DRD2. Evidence against linkage to 11q was strongest among families that may involve the BRCA1 breast cancer susceptibility gene on 17q21. However, we did not observe evidence of linkage to 11q among the remaining subgroup with neither a family history of ovarian cancer nor the appearance of linkage to 17q21.


Subject(s)
Ataxia Telangiectasia/genetics , Breast Neoplasms/genetics , Chromosomes, Human, Pair 11 , Genetic Linkage , Adult , Alleles , Base Sequence , Chromosome Mapping , Chromosomes, Human, Pair 17 , DNA Primers , Female , Genetic Markers , Genetic Predisposition to Disease , Humans , Lod Score , Middle Aged , Molecular Sequence Data , Ovarian Neoplasms/genetics , Polymerase Chain Reaction/methods , Premenopause
8.
Cancer Res ; 53(2): 212-4, 1993 Jan 15.
Article in English | MEDLINE | ID: mdl-8417809

ABSTRACT

We report here results of a linkage analysis of a marker in 35 families in which the proband had premenopausal bilateral breast cancer. This group is of particular interest given their high family risk and the question of etiological heterogeneity. Probands were ascertained from cancer registries in Los Angeles County and Connecticut and major hospitals in Montréal and Québec. Assuming no residual heterogeneity and summing lod scores over all families, we obtained strong evidence against tight linkage (e.g., lod score at theta = 0.000001 is -3.39). To address the issue of heterogeneity, we performed admixture and predivided sample analyses. Using an admixture model we were able to reject the hypothesis of no linkage versus that of linkage with homogeneity (P = 0.045). However, we were unable to reject the hypothesis of no linkage versus linkage with heterogeneity (P = 0.119) or to distinguish between linkage with homogeneity and linkage with heterogeneity (P = 0.500). Predivided sample analyses based upon age of onset, pathological characteristics, time between diagnoses of the breast cancers in each bilateral proband, and the span of ages at diagnoses within a family did not discriminate between apparently linked and unlinked families.


Subject(s)
Breast Neoplasms/genetics , Chromosomes, Human, Pair 17 , Age Factors , Female , Genetic Linkage , Genetic Markers , Humans , Likelihood Functions , Menopause , Registries
9.
Cancer Res ; 58(8): 1620-3, 1998 Apr 15.
Article in English | MEDLINE | ID: mdl-9563471

ABSTRACT

In previous studies, allelic variation in the 3' end of the vitamin D receptor gene was associated with increased risk of prostate cancer in white men. Several polymorphisms, including a BsmI restriction site and a poly(A) microsatellite, can be used interchangeably to mark the unidentified locus in whites. In African-Americans, however, these markers are not interchangeable, due to weaker linkage disequilibrium in this genomic region in this population. Here, we genotyped both the BsmI and poly(A) markers for 151 African-American prostate cancer cases (102 localized and 49 advanced) and 174 African-American male controls from a large epidemiological cohort. A direct haplotyping procedure was devised to determine BsmI/poly(A) haplotypes for double heterozygotes so that haplotypes could be used as allelic markers in standard logistic regression analyses. Using BsmI alone, b alleles were associated with a 2-fold decrease in risk of advanced prostate cancer. The association was, however, confined to haplotypes carrying a long (L) allele of the poly(A) microsatellite. BL and bL haplotypes were associated with increased and decreased risk, respectively, whereas neither BS nor bS haplotypes were associated with prostate cancer risk. An allelic variant that confers increased risk of advanced prostate cancer appears to be associated with the BsmI/poly(A) BL haplotype in African-Americans.


Subject(s)
Black People/genetics , Haplotypes/genetics , Prostatic Neoplasms/genetics , Receptors, Calcitriol/genetics , Aged , Cohort Studies , Deoxyribonucleases, Type II Site-Specific/metabolism , Genetic Markers , Humans , Male , Microsatellite Repeats , Middle Aged , Poly A/genetics , United States
10.
Cancer Res ; 58(4): 661-6, 1998 Feb 15.
Article in English | MEDLINE | ID: mdl-9485018

ABSTRACT

Although vitamin E can block mutagenesis and cell transformation in vitro and can reduce the number of chemically induced colonic adenomas in mice, previous clinical trials have found no protective effect of vitamin E supplements against colorectal adenomas, and epidemiological studies have found only weak protective effects of dietary or plasma alpha-tocopherol against colorectal cancer. We previously examined first diagnosis of colorectal adenomas in a sigmoidoscopy screening population and failed to find a protective effect of dietary vitamin E. Because measurements of dietary intake may not be a good proxy of vitamin E status, we assayed plasma alpha- and gamma-tocopherol concentration for 332 subjects with colorectal adenomas and 363 control subjects from this previous sigmoidoscopy-based study. Increasing alpha-tocopherol and decreasing gamma-tocopherol levels were associated with decreased occurrence of large (> or = 1 cm) but not of small (<1 cm) adenomas; however, after adjustment for potential confounding variables, these trends were not statistically significant. A strong trend (P = 0.02) was observed by using the alpha-tocopherol:gamma-tocopherol ratio, which may be a more sensitive indicator of alpha-tocopherol intake. Subjects in the highest versus lowest quintile of alpha-tocopherol: gamma-tocopherol ratio had an odds ratio of 0.36 (95% confidence interval, 0.14-0.95) for large adenomas. The finding that a high alpha-tocopherol:gamma-tocopherol ratio is associated with decreased occurrence of large, but not of small, colorectal adenomas is consistent with previous findings that alpha-tocopherol may be protective against colon cancer. A high plasma alpha-tocopherol:gamma-tocopherol ratio may be a better predictor of decreased cancer risk than high plasma alpha-tocopherol alone.


Subject(s)
Adenoma/blood , Adenoma/epidemiology , Colorectal Neoplasms/blood , Colorectal Neoplasms/epidemiology , Vitamin E/blood , Aged , Ethnicity , Female , Humans , Male , Middle Aged , Odds Ratio
11.
Cancer Res ; 55(6): 1224-6, 1995 Mar 15.
Article in English | MEDLINE | ID: mdl-7882312

ABSTRACT

Colorectal cancer is caused by environmental exposures and genetic predisposition. However, little is known of hereditary factors that influence development of common, non-Mendelian forms of this cancer. Interactions among carcinogen exposure, hereditary variants of enzymes involved in carcinogen metabolism, and other host factors may play a role. Genetic polymorphisms of carcinogen metabolism, such as the glutathione transferase M1 (GSTM1) null genotype, are thus possibly related to cancer risk. The GSTM1 enzyme detoxifies mutagens formed from polycyclic aromatic hydrocarbons which are found in tobacco smoke. We analyzed GSTM1 genotypes and smoking among 488 controls and 446 individuals with a first time diagnosis of colorectal adenomas which are precursors to cancer. Subjects were from two Kaiser Permanente sigmoidoscopy clinics in southern California. We observed no overall effect of the GSTM1 null genotype on the risk for colorectal adenomas (odds ratio, 0.85; 95% confidence interval = 0.65-1.10). The odds ratio for smokers with the null genotype was 2.07 (95% confidence interval = 1.14-3.77) when compared to "never smokers" without the null genotype. Using this same reference group, the odds ratio for smokers without the null genotype was 1.73 (95% confidence interval = 1.03-2.90). These two odds ratios were not significantly different (P = 0.30).


Subject(s)
Adenoma/epidemiology , Colorectal Neoplasms/epidemiology , Glutathione Transferase/genetics , Smoking/metabolism , Adenoma/genetics , Aged , Case-Control Studies , Colorectal Neoplasms/genetics , Female , Genotype , Humans , Male , Middle Aged , Prevalence
12.
Cancer Res ; 55(10): 2017-20, 1995 May 15.
Article in English | MEDLINE | ID: mdl-7743494

ABSTRACT

Polymorphic N-acetyltransferase (NAT2), an enzyme present in the colon, may effect incidence of colon cancer. Individuals with NAT2 fast acetylator genotypes may have higher colon cancer risks due to faster conversion of certain carcinogens to mutagens. We determined NAT2 genotypes in 447 subjects with distal colon adenomas and in 487 controls. No significant increase in adenoma prevalence among fast acetylators was observed. However, there was a suggestion of ethnic differences in NAT2 effects. For example, white fast acetylators potentially had slightly increased risks for adenomas (odds ratio, 1.29; 95% confidence interval, 0.90-1.84), whereas fast acetylation was potentially protective among blacks (odds ratio, 0.64; 95% confidence interval, 0.32-1.28). The apparent difference between blacks and whites may simply reflect random variation around an overall null effect, or it could represent a real difference. There was preliminary evidence for a possible interaction between NAT2 and the glutathione transferase M1 null genotype. Smokers' adenoma prevalence was 10-fold higher for fast acetylators with the null genotype compared to slow acetylators without the null genotype. Large, multiethnic populations and analysis of combinations of genes for carcinogen metabolism may be needed to further assess the role of NAT2 in colorectal tumorigenesis.


Subject(s)
Adenoma/enzymology , Arylamine N-Acetyltransferase/genetics , Colorectal Neoplasms/enzymology , Smoking/metabolism , Acetylation , Adenoma/epidemiology , Adenoma/ethnology , Aged , Arylamine N-Acetyltransferase/metabolism , Base Sequence , Black People/genetics , Case-Control Studies , Colorectal Neoplasms/epidemiology , Colorectal Neoplasms/ethnology , Female , Genotype , Humans , Male , Middle Aged , Molecular Sequence Data , Mutation , Odds Ratio , Polymorphism, Genetic , Prevalence , Smoking/adverse effects , Smoking/epidemiology , White People/genetics
13.
Biochim Biophys Acta ; 1453(3): 311-20, 1999 Mar 30.
Article in English | MEDLINE | ID: mdl-10101249

ABSTRACT

Allelic variation at the 3'-end of the vitamin D receptor (VDR) gene has been associated with a 3-5-fold increased risk of developing prostate cancer and with differences in bone mineralization. This genetic diversity does not alter the VDR protein structurally, but instead may be a marker(s) of other, nearby polymorphisms that influence message stability or translation. The work reported here was instigated to identify additional VDR 3'-UTR polymorphisms that may have functional significance and to then test whether these genetic variants alter message stability. Initially, four novel, frequently occurring sequence variants were identified that associated with two common haplotypes that were described previously. These common sequence variants were not found within three message-destabilizing elements that we mapped within the 3'-UTR of the vitamin D receptor mRNA. Furthermore, the two VDR 3'-UTR haplotypes conferred an identical half-life on a heterologous beta-globin reporter gene, in an in vitro assay. We therefore conclude that common polymorphisms within the VDR 3'-UTR do not influence message stability.


Subject(s)
Polymorphism, Genetic , RNA, Messenger/genetics , Receptors, Calcitriol/genetics , 3' Untranslated Regions , 3T3 Cells , Alleles , Animals , Genetic Variation , Humans , Leukocytes , Male , Mice , Polymorphism, Restriction Fragment Length , Prostatic Neoplasms/genetics , Risk Factors
14.
Endocr Relat Cancer ; 6(2): 165-73, 1999 Jun.
Article in English | MEDLINE | ID: mdl-10731105

ABSTRACT

Based on experimental and epidemiological evidence it is hypothesized that estrogen increases breast cancer risk by increasing mitotic activity in breast epithelial cells. Aromatase is crucial to the biosynthesis of estrogens and may therefore play a role in breast cancer development. Supporting data for an etiological role of aromatase in breast tumor biology are several-fold. First, the association between weight and postmenopausal breast cancer risk may be mediated by aromatase. Secondly, a pilot study found a higher aromatase expression in normal breast adipose tissue from breast cancer cases as opposed to healthy women. Thirdly, experimental data in animals suggest that aromatase activity predisposes mammary tissue to preneoplastic and neoplastic changes. In a multiethnic cohort study conducted in Los Angeles and on Hawaii we investigated (i) whether the plasma estrone to androstenedione (E1/A) ratio in different ethnic groups was associated with ethnic differences in breast cancer incidence, and (ii) whether genetic variation in the CYP19 gene encoding the P450 aromatase protein was associated with breast cancer risk. The age- and weight-adjusted ethnic specific E1/A ratios x 100 among women without oophorectomy were 7.92 in African-Americans, 8.22 in Japanese, 10.73 in Latinas and 9.29 in non-Latina Whites (P=0.09). The high E1/A ratio in Latina women was not associated with a high breast cancer incidence; in fact Latina women had the lowest breast cancer incidence in the cohort observed so far. We found no consistent association of an intronic (TTTA)n repeat polymorphism with breast cancer risk in different ethnic groups. This polymorphism was not associated with differences in the plasma E1/A ratio in a way that would predict its functional relevance. We describe a newly identified TTC deletion in intron 5 of the CYP19 gene that is associated with the (TTTA)n repeat polymorphism. Neither this polymorphism, nor a polymorphism at codon 264 in exon VII of the CYP19 gene, was associated with breast cancer. We did not identify any genetic variation in exon VIII in 54 African-American subjects. We identified rare genetic variants of unknown functional relevance in the promoter 1.4 of the CYP19 gene in 3 out of 24 Latina women. Further investigation into the role of aromatase in breast cancer etiology is important, given that the potential use of aromatase inhibitors as breast cancer chemopreventives depends on these results.


Subject(s)
Aromatase/metabolism , Breast Neoplasms/ethnology , Breast Neoplasms/enzymology , Neoplasms, Hormone-Dependent/ethnology , Neoplasms, Hormone-Dependent/enzymology , Aged , Androstenedione/blood , Aromatase/genetics , Breast Neoplasms/genetics , Breast Neoplasms/metabolism , Disease Susceptibility , Estrogens/metabolism , Estrone/blood , Ethnicity/genetics , Female , Humans , Middle Aged , Neoplasms, Hormone-Dependent/genetics , Neoplasms, Hormone-Dependent/metabolism , Polymorphism, Genetic , Postmenopause , Risk Factors
15.
Pharmacogenetics ; 8(3): 269-81, 1998 Jun.
Article in English | MEDLINE | ID: mdl-9682272

ABSTRACT

N-acetyltransferase NAT1, together with enzymes CYP1A2 and NAT2, helps convert heterocyclic amines to mutagens. Epidemiologic studies of the association of variants of these enzymes with colorectal cancer may provide indirect support for a heterocyclic amine mechanism. We used single strand conformation polymorphism and heteroduplex analysis to screen fro mutations in the NAT1 coding region in a case-control study (n = 932) of colorectal adenomas, which are precursors to cancer. Thirteen different single-base mutations were found: C97T, C190T, T402C, G445A-G459A-T640G ( a combination of three mutations), C559T, G560A, A613G, A752T, T777C, G781A, and A787G. Function of novel mutations was tested by bacterial production of enzymes and measurements of Km, Vmax, and stability. However, on 24-control individuals and 18 cases carried an inactivating NAT1 mutation. When combined with our data on the NAT2 acetylation polymorphism, we saw no evidence for an association between N-acetyltransferases and prevalence of adenomas. Larger sample sizes are required for further evaluation.


Subject(s)
Acetyltransferases/genetics , Adenoma/genetics , Arylamine N-Acetyltransferase , Colorectal Neoplasms/genetics , Genetic Variation , Adenoma/enzymology , Adolescent , Adult , Aged , Alleles , Amines/metabolism , California , Case-Control Studies , Colorectal Neoplasms/enzymology , DNA Primers , Enzyme Stability , Ethnicity , Genetic Testing , Humans , Isoenzymes , Middle Aged , Mutation , Odds Ratio , Polymerase Chain Reaction , Prevalence , Racial Groups , Sequence Analysis, DNA
16.
J Natl Cancer Inst Monogr ; (26): 89-93, 1999.
Article in English | MEDLINE | ID: mdl-10854491

ABSTRACT

The University of Southern California Consortium is a participating center in the National Cancer Institute's Collaborative Family Registry for Colorectal Cancer Studies (CFRCCS). Because data collection takes time, money, and effort, all of which are in short supply, we first defined our research objectives and then attempted to design our registry to enable us to address these objectives in an efficient manner. We decided on a family-based design, and our objectives are to characterize cloned genes that are generally accepted causes of colorectal cancer, to assess putative candidate genes, to map new genes, and to conduct prevention trials in high-risk subjects. For the gene characterization objectives, our primary aim is to estimate gene frequency and penetrance, with a secondary aim to investigate factors that may affect penetrance (allele-specific effects plus gene-gene and gene-environment interactions). We describe a multiple-stage design to select families into the registry. After a family is selected into the registry, we collect questionnaire data and blood samples on selected subjects only, and we tailor data collection decisions to each family (given who is affected and who is available) to optimize power per unit effort and cost. We also discuss practical decisions faced by our registry, including 1) defining a reference period for use in questionnaires; 2) deciding whether or not to establish cell lines and, if so, on whom; and 3) determining which cases should be tested for microsatellite instability. Finally, we address the appropriate use of data derived from high-risk clinics, within more broadly defined, population-based research.


Subject(s)
Colorectal Neoplasms/genetics , Registries , Research Design , Colorectal Neoplasms/epidemiology , Humans , Risk , Tumor Cells, Cultured
17.
Cancer Epidemiol Biomarkers Prev ; 6(5): 307-14, 1997 May.
Article in English | MEDLINE | ID: mdl-9149889

ABSTRACT

Data sparseness currently limits gene-environment interaction estimation. To improve effect estimates of gene-environment interactions, we give an overview of one approach, hierarchical modeling, and propose a two-stage hierarchical model. The first stage is a logistic model for the joint effects of the genetic and environmental factors. The second stage regresses the joint effects on genotype-specific enzymatic activity of the environmentally derived substrate. The model is illustrated using a case-control study of adenomas of the large bowel, for which NAT2 genotype and dietary data were collected. The first-stage interactions of dietary components and genotype were regressed on initial conversion rates of dietary heterocyclic amines to aryl nitrenium ions. We fit the hierarchical model by penalized likelihood. Compared to effect estimates from maximum-likelihood logistic regression, hierarchical results are more reasonable and precise. These results lend further support to previous observations that hierarchical regression is preferable to ordinary logistic regression when multiple factors and their interactions are being studied. We propose that hierarchical modeling can act as a bridge between molecular epidemiology studies and laboratory data, combining both efficiently.


Subject(s)
Adenomatous Polyps/genetics , Arylamine N-Acetyltransferase/genetics , Cell Transformation, Neoplastic/genetics , Colorectal Neoplasms/genetics , Feeding Behavior , Gene Expression Regulation, Neoplastic/physiology , Genotype , Models, Genetic , Adenomatous Polyps/epidemiology , Adenomatous Polyps/pathology , Cell Transformation, Neoplastic/pathology , Cocarcinogenesis , Colorectal Neoplasms/epidemiology , Colorectal Neoplasms/pathology , Humans , Likelihood Functions , Meat/adverse effects , Models, Statistical , Regression Analysis , Risk
18.
Cancer Epidemiol Biomarkers Prev ; 9(7): 653-6, 2000 Jul.
Article in English | MEDLINE | ID: mdl-10919733

ABSTRACT

Although rectal mucosal labeling index is thought to be a useful surrogate biomarker for colorectal cancer, the ability of the index to predict future neoplasia is unclear. We obtained rectal mucosal biopsies from 333 participants of a randomized controlled chemoprevention trial of calcium supplementation to determine whether labeling index was correlated with concurrent or future colorectal neoplasms. Labeling index was measured using proliferating cell nuclear antigen immunohistochemistry. Adenomas were enumerated at the time of the biopsies (cross-sectional) and 3 years later (prospective). We used logistic regression to test for an association of adenoma occurrence with overall labeling index, the mean proliferative height, and labeling index in the upper 40% of colon crypts. In the cross-sectional analysis, we found indications that higher proliferation was associated with an increase in the prevalence of adenomas. The overall adjusted odds ratios (OR) (95% confidence interval) were 1.14 (0.90-1.45) per % crypt labeling index, OR 1.08 (0.99-1.19) for upper crypt proliferation, and OR 1.07 (1.03-1.12) for proliferative height. In contrast, individuals with higher labeling index at baseline were actually less likely to have adenomas in the prospective analyses: OR 0.80 (0.62-1.02) per % crypt labeling index, OR 0.86 (0.73-1.00) for upper crypt index, and OR 0.97 (0.93-1.01) for proliferative height. Proliferative index does not predict future colorectal neoplasia, although it may be weakly associated with the presence of current adenomas. These results have important implications for the design of future intervention studies. Although it may be attractive to include the measurement of intermediate markers in large controlled trials, until we have more confidence in their performance, we should rely on better proven and more reliable intermediates, such as adenomas.


Subject(s)
Adenoma/pathology , Colorectal Neoplasms/pathology , Intestinal Mucosa/cytology , Rectum/cytology , Adenoma/epidemiology , Adenoma/etiology , Aged , Cell Division , Colorectal Neoplasms/epidemiology , Colorectal Neoplasms/etiology , Cross-Sectional Studies , Female , Humans , Immunohistochemistry , Male , Middle Aged , Odds Ratio , Predictive Value of Tests , Prevalence , Proliferating Cell Nuclear Antigen/analysis , Prospective Studies , Risk Assessment
19.
Article in English | MEDLINE | ID: mdl-7606194

ABSTRACT

We determined whether estimation of intake of specific carotenoids with a standard food-frequency questionnaire (FFQ) could be improved by collection of additional data on the intake of carotenoid-rich food items. The foods included on an addendum to the standard FFQ were potentially important dietary contributors of alpha- and beta-carotene, beta-cryptoxanthin, lutein, zeaxanthin, or lycopene. Participants (n = 215), ages 50-74 years, provided fasting blood samples and completed the FFQ and the addendum. The participants were enrolled in a prepaid health plan and had undergone screening sigmoidoscopy for detection of colorectal polyps. Addendum foods were identified that accounted for variation in blood levels of specific carotenoids, conditional on intake of foods on the standard FFQ. Estimated carotenoid intakes from the standard FFQ, and from the modified FFQ with the selected addendum foods, were examined in relation to plasma carotenoid levels. The correlation coefficient between estimated carotenoid intake and plasma levels (adjusted for age, sex, serum cholesterol, alcohol intake, smoking status, and energy intake) were essentially the same for the standard and modified FFQs. The adjusted correlations for the standard FFQ only were 0.26 for alpha-carotene, 0.22 for beta-carotene, 0.36 for beta-cryptoxanthin, 0.32 for lutein+zeaxanthin, and 0.34 for lycopene. Adding carotenoid-rich foods to the FFQ did not improve estimation of intake for the carotenoids examined in this population. We conclude that assessment of intake of specific carotenoids with the FFQs currently in use may not necessarily be improved by a modified list of carotenoid-rich foods.


Subject(s)
Carotenoids/administration & dosage , Diet Surveys , Surveys and Questionnaires , Adenomatous Polyps/blood , Adenomatous Polyps/prevention & control , Aged , Carotenoids/blood , Colonic Polyps/blood , Colonic Polyps/prevention & control , Colorectal Neoplasms/blood , Colorectal Neoplasms/prevention & control , Female , Humans , Male , Mass Screening , Middle Aged , Risk Factors , Sigmoidoscopy
20.
Cancer Epidemiol Biomarkers Prev ; 5(8): 607-12, 1996 Aug.
Article in English | MEDLINE | ID: mdl-8824362

ABSTRACT

Levels of serum lipids are partially determined by several established risk factors for colorectal cancer and are themselves potential risk factors for the disease. However, evaluating serum lipids as risk factors has proved problematic because metabolic events associated with malignant transformation or progression appear to alter serum lipid concentrations. Serum lipid concentrations are less likely to have altered in individuals with precancerous lesions, such as colorectal adenomas. During 1991-1993, we collected fasting blood samples from and provided questionnaires to men and women 50-75 years old, who visited sigmoidoscopy clinics at a health maintenance organization. Serum lipid concentrations from 486 cases with adenomas and 520 controls were analyzed. Compared to subjects in the lowest quintile of serum triglyceride concentrations, subjects in the highest quintile had an adjusted odds ratio of 1.5 (95% confidence interval, 1.0-2.2). The corresponding odds ratio for total cholesterol was 1.3 (0.9-1.9); for high-density lipoprotein cholesterol, it was 1.1 (0.7-1.6); and for low-density lipoprotein cholesterol, it was 1.1 (0.7-1.6). Further adjustment for potential confounding did not alter these results substantively, although determinants of serum triglycerides and high-density lipoprotein cholesterol (e.g., obesity, physical activity, and refined carbohydrate and alcohol intake) in this and other studies may not be sufficiently well measured to avoid residual confounding. Higher levels of serum triglycerides are associated with an increased risk of adenomatous polyps. Consistent with previous studies, serum cholesterol was not inversely related to the risk of colorectal polyps.


Subject(s)
Adenoma/blood , Colorectal Neoplasms/blood , Lipids/blood , Precancerous Conditions/blood , Aged , Biomarkers/blood , Blood Chemical Analysis , Case-Control Studies , Cholesterol, HDL/blood , Colorectal Neoplasms/prevention & control , Female , Humans , Logistic Models , Male , Middle Aged , Precancerous Conditions/prevention & control , Risk Factors , Sigmoidoscopy , Triglycerides/blood
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