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1.

A Kinesin-14 Motor Activates Neocentromeres to Promote Meiotic Drive in Maize.

Dawe, R Kelly; Lowry, Elizabeth G; Gent, Jonathan I; Stitzer, Michelle C; Swentowsky, Kyle W; Higgins, David M; Ross-Ibarra, Jeffrey; Wallace, Jason G; Kanizay, Lisa B; Alabady, Magdy; Qiu, Weihong; Tseng, Kuo-Fu; Wang, Na; Gao, Zhi; Birchler, James A; Harkess, Alex E; Hodges, Amy L; Hiatt, Evelyn N.

Cell ; 173(4): 839-850.e18, 2018 05 03.

Article in English | MEDLINE | ID: mdl-29628142

2.

Distinct kinesin motors drive two types of maize neocentromeres.

Swentowsky, Kyle W; Gent, Jonathan I; Lowry, Elizabeth G; Schubert, Veit; Ran, Xia; Tseng, Kuo-Fu; Harkess, Alex E; Qiu, Weihong; Dawe, R Kelly.

Genes Dev ; 34(17-18): 1239-1251, 2020 09 01.

Article in English | MEDLINE | ID: mdl-32820038

3.

Why should we study plant sex chromosomes?

Charlesworth, Deborah; Harkess, Alex.

Plant Cell ; 36(5): 1242-1256, 2024 May 01.

Article in English | MEDLINE | ID: mdl-38163640

4.

Complementing model species with model clades.

Mabry, Makenzie E; Abrahams, R Shawn; Al-Shehbaz, Ihsan A; Baker, William J; Barak, Simon; Barker, Michael S; Barrett, Russell L; Beric, Aleksandra; Bhattacharya, Samik; Carey, Sarah B; Conant, Gavin C; Conran, John G; Dassanayake, Maheshi; Edger, Patrick P; Hall, Jocelyn C; Hao, Yue; Hendriks, Kasper P; Hibberd, Julian M; King, Graham J; Kliebenstein, Daniel J; Koch, Marcus A; Leitch, Ilia J; Lens, Frederic; Lysak, Martin A; McAlvay, Alex C; McKibben, Michael T W; Mercati, Francesco; Moore, Richard C; Mummenhoff, Klaus; Murphy, Daniel J; Nikolov, Lachezar A; Pisias, Michael; Roalson, Eric H; Schranz, M Eric; Thomas, Shawn K; Yu, Qingyi; Yocca, Alan; Pires, J Chris; Harkess, Alex E.

Plant Cell ; 2023 Oct 12.

Article in English | MEDLINE | ID: mdl-37824826

5.

Interchromosomal linkage disequilibrium and linked fitness cost loci associated with selection for herbicide resistance.

Gupta, Sonal; Harkess, Alex; Soble, Anah; Van Etten, Megan; Leebens-Mack, James; Baucom, Regina S.

New Phytol ; 238(3): 1263-1277, 2023 05.

Article in English | MEDLINE | ID: mdl-36721257

6.

Sex Determination by Two Y-Linked Genes in Garden Asparagus.

Harkess, Alex; Huang, Kun; van der Hulst, Ron; Tissen, Bart; Caplan, Jeffrey L; Koppula, Aakash; Batish, Mona; Meyers, Blake C; Leebens-Mack, Jim.

Plant Cell ; 32(6): 1790-1796, 2020 06.

Article in English | MEDLINE | ID: mdl-32220850

7.

A derived ZW chromosome system in Amborella trichopoda, representing the sister lineage to all other extant flowering plants.

Käfer, Jos; Bewick, Adam; Andres-Robin, Amélie; Lapetoule, Garance; Harkess, Alex; Caïus, José; Fogliani, Bruno; Gâteblé, Gildas; Ralph, Paula; dePamphilis, Claude W; Picard, Franck; Scutt, Charlie; Marais, Gabriel A B; Leebens-Mack, James.

New Phytol ; 233(4): 1636-1642, 2022 02.

Article in English | MEDLINE | ID: mdl-34342006

8.

Reproductive phasiRNA loci and DICER-LIKE5, but not microRNA loci, diversified in monocotyledonous plants.

Patel, Parth; Mathioni, Sandra M; Hammond, Reza; Harkess, Alex E; Kakrana, Atul; Arikit, Siwaret; Dusia, Ayush; Meyers, Blake C.

Plant Physiol ; 185(4): 1764-1782, 2021 04 23.

Article in English | MEDLINE | ID: mdl-33793935

9.

Plant 24-nt reproductive phasiRNAs from intramolecular duplex mRNAs in diverse monocots.

Kakrana, Atul; Mathioni, Sandra M; Huang, Kun; Hammond, Reza; Vandivier, Lee; Patel, Parth; Arikit, Siwaret; Shevchenko, Olga; Harkess, Alex E; Kingham, Bruce; Gregory, Brian D; Leebens-Mack, James H; Meyers, Blake C.

Genome Res ; 28(9): 1333-1344, 2018 09.

Article in English | MEDLINE | ID: mdl-30002159

10.

Improved Spirodela polyrhiza genome and proteomic analyses reveal a conserved chromosomal structure with high abundance of chloroplastic proteins favoring energy production.

Harkess, Alex; McLoughlin, Fionn; Bilkey, Natasha; Elliott, Kiona; Emenecker, Ryan; Mattoon, Erin; Miller, Kari; Czymmek, Kirk; Vierstra, Richard D; Meyers, Blake C; Michael, Todd P.

J Exp Bot ; 72(7): 2491-2500, 2021 03 29.

Article in English | MEDLINE | ID: mdl-33454741

11.

Sex-linked gene expression and the emergence of hermaphrodites in Carica papaya.

Chae, Taylor; Harkess, Alex; Moore, Richard C.

Am J Bot ; 108(6): 1029-1041, 2021 06.

Article in English | MEDLINE | ID: mdl-34156700

12.

A haplotype resolved chromosome-scale assembly of North American wild apple Malus fusca and comparative genomics of the fire blight Mfu10 locus.

Mansfeld, Ben N; Yocca, Alan; Ou, Shujun; Harkess, Alex; Burchard, Erik; Gutierrez, Benjamin; van Nocker, Steve; Gottschalk, Christopher.

Plant J ; 116(4): 989-1002, 2023 Nov.

Article in English | MEDLINE | ID: mdl-37639371

13.

Brassicales phylogeny inferred from 72 plastid genes: A reanalysis of the phylogenetic localization of two paleopolyploid events and origin of novel chemical defenses.

Edger, Patrick P; Hall, Jocelyn C; Harkess, Alex; Tang, Michelle; Coombs, Jill; Mohammadin, Setareh; Schranz, M Eric; Xiong, Zhiyong; Leebens-Mack, James; Meyers, Blake C; Sytsma, Kenneth J; Koch, Marcus A; Al-Shehbaz, Ihsan A; Pires, J Chris.

Am J Bot ; 105(3): 463-469, 2018 03.

Article in English | MEDLINE | ID: mdl-29574686

14.

Gα and regulator of G-protein signaling (RGS) protein pairs maintain functional compatibility and conserved interaction interfaces throughout evolution despite frequent loss of RGS proteins in plants.

Hackenberg, Dieter; McKain, Michael R; Lee, Soon Goo; Roy Choudhury, Swarup; McCann, Tyler; Schreier, Spencer; Harkess, Alex; Pires, J Chris; Wong, Gane Ka-Shu; Jez, Joseph M; Kellogg, Elizabeth A; Pandey, Sona.

New Phytol ; 216(2): 562-575, 2017 Oct.

Article in English | MEDLINE | ID: mdl-27634188

15.

Small RNAs in the Maillot Jaune: Transcriptional Analysis of the Plant Cell Cycle.

Harkess, Alex.

Plant Cell ; 31(8): 1676-1677, 2019 08.

Article in English | MEDLINE | ID: mdl-31289114

16.

Blocking the Guards: The ALY1 Nuclear Export Protein Is Required for DNA Methylation Machinery to Function.

Harkess, Alex.

Plant Cell ; 31(4): 753-754, 2019 04.

Article in English | MEDLINE | ID: mdl-30852553

17.

Six Days, Seven Nights: The Transcriptional Speed of Seed Development.

Harkess, Alex.

Plant Cell ; 31(6): 1214-1215, 2019 06.

Article in English | MEDLINE | ID: mdl-31068453

18.

Smashing Barriers in Biolistic Plant Transformation.

Harkess, Alex.

Plant Cell ; 31(2): 273-274, 2019 02.

Article in English | MEDLINE | ID: mdl-30728270

19.

James A. Birchler.

Frank, Margaret; Harkess, Alex; Washburn, Jacob.

Plant Cell ; 31(10): 2277-2280, 2019 10.

Article in English | MEDLINE | ID: mdl-31266846

20.

A Century of Sex Determination in Flowering Plants.

Harkess, Alex; Leebens-Mack, Jim.

J Hered ; 108(1): 69-77, 2017 01.

Article in English | MEDLINE | ID: mdl-27974487

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A Kinesin-14 Motor Activates Neocentromeres to Promote Meiotic Drive in Maize.

Distinct kinesin motors drive two types of maize neocentromeres.

Why should we study plant sex chromosomes?

Complementing model species with model clades.

Interchromosomal linkage disequilibrium and linked fitness cost loci associated with selection for herbicide resistance.

Sex Determination by Two Y-Linked Genes in Garden Asparagus.

A derived ZW chromosome system in Amborella trichopoda, representing the sister lineage to all other extant flowering plants.

Reproductive phasiRNA loci and DICER-LIKE5, but not microRNA loci, diversified in monocotyledonous plants.

Plant 24-nt reproductive phasiRNAs from intramolecular duplex mRNAs in diverse monocots.

Improved Spirodela polyrhiza genome and proteomic analyses reveal a conserved chromosomal structure with high abundance of chloroplastic proteins favoring energy production.

Sex-linked gene expression and the emergence of hermaphrodites in Carica papaya.

A haplotype resolved chromosome-scale assembly of North American wild apple Malus fusca and comparative genomics of the fire blight Mfu10 locus.

Brassicales phylogeny inferred from 72 plastid genes: A reanalysis of the phylogenetic localization of two paleopolyploid events and origin of novel chemical defenses.

Gα and regulator of G-protein signaling (RGS) protein pairs maintain functional compatibility and conserved interaction interfaces throughout evolution despite frequent loss of RGS proteins in plants.

Small RNAs in the Maillot Jaune: Transcriptional Analysis of the Plant Cell Cycle.

Blocking the Guards: The ALY1 Nuclear Export Protein Is Required for DNA Methylation Machinery to Function.

Six Days, Seven Nights: The Transcriptional Speed of Seed Development.

Smashing Barriers in Biolistic Plant Transformation.

James A. Birchler.

A Century of Sex Determination in Flowering Plants.