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1.

Identifying branch-specific positive selection throughout the regulatory genome using an appropriate proxy neutral.

Berrio, Alejandro; Haygood, Ralph; Wray, Gregory A.

BMC Genomics ; 21(1): 359, 2020 May 13.

Article in English | MEDLINE | ID: mdl-32404186

2.

Gene expression and adaptive noncoding changes during human evolution.

Babbitt, Courtney C; Haygood, Ralph; Nielsen, William J; Wray, Gregory A.

BMC Genomics ; 18(1): 435, 2017 06 05.

Article in English | MEDLINE | ID: mdl-28583075

3.

The impact of gene expression variation on the robustness and evolvability of a developmental gene regulatory network.

Garfield, David A; Runcie, Daniel E; Babbitt, Courtney C; Haygood, Ralph; Nielsen, William J; Wray, Gregory A.

PLoS Biol ; 11(10): e1001696, 2013 Oct.

Article in English | MEDLINE | ID: mdl-24204211

4.

Promoter regions of many neural- and nutrition-related genes have experienced positive selection during human evolution.

Haygood, Ralph; Fedrigo, Olivier; Hanson, Brian; Yokoyama, Ken-Daigoro; Wray, Gregory A.

Nat Genet ; 39(9): 1140-4, 2007 Sep.

Article in English | MEDLINE | ID: mdl-17694055

5.

Contrasts between adaptive coding and noncoding changes during human evolution.

Haygood, Ralph; Babbitt, Courtney C; Fedrigo, Olivier; Wray, Gregory A.

Proc Natl Acad Sci U S A ; 107(17): 7853-7, 2010 Apr 27.

Article in English | MEDLINE | ID: mdl-20385805

6.

Population genetics of cis-regulatory sequences that operate during embryonic development in the sea urchin Strongylocentrotus purpuratus.

Garfield, David; Haygood, Ralph; Nielsen, William J; Wray, Gregory A.

Evol Dev ; 14(2): 152-67, 2012.

Article in English | MEDLINE | ID: mdl-23017024

7.

Multiple Functional Variants in cis Modulate PDYN Expression.

Babbitt, Courtney C; Silverman, Jesse S; Haygood, Ralph; Reininga, Jennifer M; Rockman, Matthew V; Wray, Gregory A.

Mol Biol Evol ; 27(2): 465-79, 2010 Feb.

Article in English | MEDLINE | ID: mdl-19910384

8.

A potential role for glucose transporters in the evolution of human brain size.

Fedrigo, Olivier; Pfefferle, Adam D; Babbitt, Courtney C; Haygood, Ralph; Wall, Christine E; Wray, Gregory A.

Brain Behav Evol ; 78(4): 315-26, 2011.

Article in English | MEDLINE | ID: mdl-21986508

9.

Genomic features that predict allelic imbalance in humans suggest patterns of constraint on gene expression variation.

Tung, Jenny; Fédrigo, Olivier; Haygood, Ralph; Mukherjee, Sayan; Wray, Gregory A.

Mol Biol Evol ; 26(9): 2047-59, 2009 Sep.

Article in English | MEDLINE | ID: mdl-19506001

10.

Evolutionary analysis of the cis-regulatory region of the spicule matrix gene SM50 in strongylocentrotid sea urchins.

Walters, Jenna; Binkley, Elaine; Haygood, Ralph; Romano, Laura A.

Dev Biol ; 315(2): 567-78, 2008 Mar 15.

Article in English | MEDLINE | ID: mdl-18262514

11.

Migration load and the coexistence of ecologically similar sexuals and asexuals.

Spitzer, Brian W; Haygood, Ralph.

Am Nat ; 170(4): 567-72, 2007 Oct.

Article in English | MEDLINE | ID: mdl-17891735

12.

Spatio-Temporal Variation in Landscape Composition May Speed Resistance Evolution of Pests to Bt Crops.

Ives, Anthony R; Paull, Cate; Hulthen, Andrew; Downes, Sharon; Andow, David A; Haygood, Ralph; Zalucki, Myron P; Schellhorn, Nancy A.

PLoS One ; 12(1): e0169167, 2017.

Article in English | MEDLINE | ID: mdl-28046073

13.

Sexual conflict and protein polymorphism.

Haygood, Ralph.

Evolution ; 58(7): 1414-23, 2004 Jul.

Article in English | MEDLINE | ID: mdl-15341145

14.

Consequences of recurrent gene flow from crops to wild relatives.

Haygood, Ralph; Ives, Anthony R; Andow, David A.

Proc Biol Sci ; 270(1527): 1879-86, 2003 Sep 22.

Article in English | MEDLINE | ID: mdl-14561300

15.

Whole-genome positive selection and habitat-driven evolution in a shallow and a deep-sea urchin.

Oliver, Thomas A; Garfield, David A; Manier, Mollie K; Haygood, Ralph; Wray, Gregory A; Palumbi, Stephen R.

Genome Biol Evol ; 2: 800-14, 2010.

Article in English | MEDLINE | ID: mdl-20935062

16.

Evolution of incompatibility-inducing microbes in subdivided host populations.

Haygood, Ralph; Turelli, Michael.

Evolution ; 63(2): 432-47, 2009 Feb.

Article in English | MEDLINE | ID: mdl-19154372

17.

Functional consequences of genetic variation in primates on tyrosine hydroxylase (TH) expression in vitro.

Warner, Lisa R; Babbitt, Courtney C; Primus, Alex E; Severson, Tonya F; Haygood, Ralph; Wray, Gregory A.

Brain Res ; 1288: 1-8, 2009 Sep 08.

Article in English | MEDLINE | ID: mdl-19591812

18.

When two is better than one.

Babbitt, Courtney C; Haygood, Ralph; Wray, Gregory A.

Cell ; 131(2): 225-7, 2007 Oct 19.

Article in English | MEDLINE | ID: mdl-17956721

19.

Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Mutation rate and the cost of complexity.

Haygood, Ralph.

Mol Biol Evol ; 23(5): 957-63, 2006 May.

Article in English | MEDLINE | ID: mdl-16469852

20.

Coexistence in MacArthur-style consumer-resource models.

Haygood, Ralph.

Theor Popul Biol ; 61(2): 215-23, 2002 Mar.

Article in English | MEDLINE | ID: mdl-11969391

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Identifying branch-specific positive selection throughout the regulatory genome using an appropriate proxy neutral.

Gene expression and adaptive noncoding changes during human evolution.

The impact of gene expression variation on the robustness and evolvability of a developmental gene regulatory network.

Promoter regions of many neural- and nutrition-related genes have experienced positive selection during human evolution.

Contrasts between adaptive coding and noncoding changes during human evolution.

Population genetics of cis-regulatory sequences that operate during embryonic development in the sea urchin Strongylocentrotus purpuratus.

Multiple Functional Variants in cis Modulate PDYN Expression.

A potential role for glucose transporters in the evolution of human brain size.

Genomic features that predict allelic imbalance in humans suggest patterns of constraint on gene expression variation.

Evolutionary analysis of the cis-regulatory region of the spicule matrix gene SM50 in strongylocentrotid sea urchins.

Migration load and the coexistence of ecologically similar sexuals and asexuals.

Spatio-Temporal Variation in Landscape Composition May Speed Resistance Evolution of Pests to Bt Crops.

Sexual conflict and protein polymorphism.

Consequences of recurrent gene flow from crops to wild relatives.

Whole-genome positive selection and habitat-driven evolution in a shallow and a deep-sea urchin.

Evolution of incompatibility-inducing microbes in subdivided host populations.

Functional consequences of genetic variation in primates on tyrosine hydroxylase (TH) expression in vitro.

When two is better than one.

Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Mutation rate and the cost of complexity.

Coexistence in MacArthur-style consumer-resource models.