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1.
Enhancers predominantly regulate gene expression during differentiation via transcription initiation.
Mol Cell
; 81(5): 983-997.e7, 2021 03 04.
Article
in English
| MEDLINE | ID: mdl-33539786
2.
Absolute Quantification of Transcription Factors Reveals Principles of Gene Regulation in Erythropoiesis.
Mol Cell
; 78(5): 960-974.e11, 2020 06 04.
Article
in English
| MEDLINE | ID: mdl-32330456
3.
Defining genome architecture at base-pair resolution.
Nature
; 595(7865): 125-129, 2021 07.
Article
in English
| MEDLINE | ID: mdl-34108683
4.
Making connections: enhancers in cellular differentiation.
Trends Genet
; 38(4): 395-408, 2022 04.
Article
in English
| MEDLINE | ID: mdl-34753603
5.
Natural and Experimental Rewiring of Gene Regulatory Regions.
Annu Rev Genomics Hum Genet
; 23: 73-97, 2022 08 31.
Article
in English
| MEDLINE | ID: mdl-35472292
6.
ATR-X syndrome protein targets tandem repeats and influences allele-specific expression in a size-dependent manner.
Cell
; 143(3): 367-78, 2010 Oct 29.
Article
in English
| MEDLINE | ID: mdl-21029860
7.
Chromatin interaction maps identify Wnt responsive cis-regulatory elements coordinating Paupar-Pax6 expression in neuronal cells.
PLoS Genet
; 18(6): e1010230, 2022 06.
Article
in English
| MEDLINE | ID: mdl-35709096
8.
Comparative analysis of three-dimensional chromosomal architecture identifies a novel fetal hemoglobin regulatory element.
Genes Dev
; 31(16): 1704-1713, 2017 08 15.
Article
in English
| MEDLINE | ID: mdl-28916711
9.
Unlinking an lncRNA from Its Associated cis Element.
Mol Cell
; 62(1): 104-10, 2016 Apr 07.
Article
in English
| MEDLINE | ID: mdl-27041223
10.
DeepC: predicting 3D genome folding using megabase-scale transfer learning.
Nat Methods
; 17(11): 1118-1124, 2020 11.
Article
in English
| MEDLINE | ID: mdl-33046896
11.
LanceOtron: a deep learning peak caller for genome sequencing experiments.
Bioinformatics
; 38(18): 4255-4263, 2022 09 15.
Article
in English
| MEDLINE | ID: mdl-35866989
12.
Fra-1 regulates its target genes via binding to remote enhancers without exerting major control on chromatin architecture in triple negative breast cancers.
Nucleic Acids Res
; 49(5): 2488-2508, 2021 03 18.
Article
in English
| MEDLINE | ID: mdl-33533919
13.
Genetic and functional insights into CDA-I prevalence and pathogenesis.
J Med Genet
; 58(3): 185-195, 2021 03.
Article
in English
| MEDLINE | ID: mdl-32518175
14.
Sasquatch: predicting the impact of regulatory SNPs on transcription factor binding from cell- and tissue-specific DNase footprints.
Genome Res
; 27(10): 1730-1742, 2017 10.
Article
in English
| MEDLINE | ID: mdl-28904015
15.
Functional characterisation of cis-regulatory elements governing dynamic Eomes expression in the early mouse embryo.
Development
; 144(7): 1249-1260, 2017 04 01.
Article
in English
| MEDLINE | ID: mdl-28174238
16.
How best to identify chromosomal interactions: a comparison of approaches.
Nat Methods
; 14(2): 125-134, 2017 01 31.
Article
in English
| MEDLINE | ID: mdl-28139673
17.
Intragenic enhancers act as alternative promoters.
Mol Cell
; 45(4): 447-58, 2012 Feb 24.
Article
in English
| MEDLINE | ID: mdl-22264824
18.
DNA methylation of intragenic CpG islands depends on their transcriptional activity during differentiation and disease.
Proc Natl Acad Sci U S A
; 114(36): E7526-E7535, 2017 09 05.
Article
in English
| MEDLINE | ID: mdl-28827334
19.
Between form and function: the complexity of genome folding.
Hum Mol Genet
; 26(R2): R208-R215, 2017 10 01.
Article
in English
| MEDLINE | ID: mdl-28977451
20.
Multiplexed analysis of chromosome conformation at vastly improved sensitivity.
Nat Methods
; 13(1): 74-80, 2016 Jan.
Article
in English
| MEDLINE | ID: mdl-26595209