Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics.

Elucidating enzyme-substrate relationships in posttranslational modification (PTM) networks is crucial for understanding signal transduction pathways but is technically difficult because enzyme-substrate interactions tend to be transient. Here, we demonstrate that TurboID-based proximity labeling (TbPL) effectively and specifically captures the substrates of kinases and phosphatases. TbPL-mass spectrometry (TbPL-MS) identified over 400 proximal proteins of Arabidopsis thaliana BRASSINOSTEROID-INSENSITIVE2 (BIN2), a member of the GLYCOGEN SYNTHASE KINASE 3 (GSK3) family that integrates signaling pathways controlling diverse developmental and acclimation processes. A large portion of the BIN2-proximal proteins showed BIN2-dependent phosphorylation in vivo or in vitro, suggesting that these are BIN2 substrates. Protein-protein interaction network analysis showed that the BIN2-proximal proteins include interactors of BIN2 substrates, revealing a high level of interactions among the BIN2-proximal proteins. Our proteomic analysis establishes the BIN2 signaling network and uncovers BIN2 functions in regulating key cellular processes such as transcription, RNA processing, translation initiation, vesicle trafficking, and cytoskeleton organization. We further discovered significant overlap between the GSK3 phosphorylome and the O-GlcNAcylome, suggesting an evolutionarily ancient relationship between GSK3 and the nutrient-sensing O-glycosylation pathway. Our work presents a powerful method for mapping PTM networks, a large dataset of GSK3 kinase substrates, and important insights into the signaling network that controls key cellular functions underlying plant growth and acclimation.

Brassinosteroids enhance salicylic acid-mediated immune responses by inhibiting BIN2 phosphorylation of clade I TGA transcription factors in Arabidopsis.

Salicylic acid (SA) plays an important role in plant immune response, including resistance to pathogens and systemic acquired resistance. Two major components, NONEXPRESSOR OF PATHOGENESIS-RELATED GENES (NPRs) and TGACG motif-binding transcription factors (TGAs), are known to mediate SA signaling, which might also be orchestrated by other hormonal and environmental changes. Nevertheless, the molecular and functional interactions between SA signaling components and other cellular signaling pathways remain poorly understood. Here we showed that the steroid plant hormone brassinosteroid (BR) promotes SA responses by inactivating BR-INSENSITIVE 2 (BIN2), which inhibits the redox-sensitive clade I TGAs in Arabidopsis. We found that both BR and the BIN2 inhibitor bikinin synergistically increase SA-mediated physiological responses, such as resistance to Pst DC3000. Our genetic and biochemical analyses indicated that BIN2 functionally interacts with TGA1 and TGA4, but not with other TGAs. We further demonstrated that BIN2 phosphorylates Ser-202 of TGA4, resulting in the suppression of the redox-dependent interaction between TGA4 and NPR1 as well as destabilization of TGA4. Consistently, transgenic Arabidopsis overexpressing TGA4-YFP with a S202A mutation displayed enhanced SA responses compared to the wild-type TGA4-YFP plants. Taken together, these results suggest a novel crosstalk mechanism by which BR signaling coordinates the SA responses mediated by redox-sensitive clade I TGAs.

Chemical equilibrium and critical phenomena: the solubilities of manganese dioxide and aluminum oxide in isobutyric acid + water near its consolute point.

We have measured the solubilities of manganese dioxide and aluminum oxide in isobutyric acid + water along its critical isopleth at temperatures above the upper critical solution temperature at 26.2 degrees C. Both oxides are basic anhydrides that react with isobutyric acid to produce the metal isobutyrate and water. In both cases, the measured solubility values, s, were in the parts per million range. When the solubility data for either of these oxides were plotted in van't Hoff form with ln s vs 1/T, a straight line resulted for absolute temperatures, T, sufficiently in excess of the critical solution temperature, T(c). The sign of the slope of the line indicated that manganese dioxide dissolved endothermically, while aluminum oxide dissolved exothermically. When the temperature was within 1 K of T(c), however, the local van't Hoff slope, ( partial differential ln s/ partial differential(1/T)), appeared to diverge toward negative infinity in the case of manganese dioxide, while it appeared to diverge toward positive infinity in the case of aluminum oxide. By applying the principle of critical point universality to the critical behavior of thermodynamic derivatives, we have shown that the existence of a divergence in ( partial differential ln s/ partial differential(1/T)) as T approaches T(c) is to be expected when the dissolution reaction of the oxide involves both components of the solvent. Application of the Gibbs-Helmholtz equation showed that the sign of the divergence must be opposite to the sign of the heat of solution. The experimental solubility data sets for both manganese dioxide and aluminum oxide are in good agreement with these theoretical assertions.

Reaction kinetics and critical phenomena: rates of some first order gas evolution reactions in binary solvents with a consolute point.

We have measured the rate of carbon dioxide evolution in the aniline catalyzed decomposition of acetone dicarboxylic acid in a mixture of isobutyric acid + water near its consolute point. Within a temperature interval of 1 degrees C, which included the critical solution temperature, the first-order rate constant oscillated in magnitude by about 10% as it passed through three complete cycles of slowing down followed by speeding up. Whereas we can find no ready explanation for the speeding up, we suggest that, because the mixture contained no inert components, the slowing down should belong to the Griffiths-Wheeler class of strong critical effects [Phys. Rev. A 1970, 2, 1047]. As a check on this conclusion, we have measured the rate of the SN1 decomposition of benzene diazonium tetrafluoroborate in 2-butoxyethanol + water near the lower critical solution temperature and also the rate of the acid-catalyzed decomposition of ethyl diazoacetate in isobutyric acid + water near the upper critical solution temperature. Both of these reactions evolve nitrogen. In the first reaction, 2-butoxyethanol is inert, whereas in the second, isobutyric acid is inert. In both cases, because there was one inert component, we regarded the response of the rate constant to temperature in the critical region to be representative of the Griffiths-Wheeler class of weak critical effects. Within our accuracy of measurement of about 2% in the rate constant and about 1 mK in the temperature, we could detect no effect of the critical point on the rates of either of these reactions, suggesting that a weak effect may be too small to be seen with our experimental apparatus. The successful observation of a critical effect in the rate of decomposition of acetone dicarboxylic acid proves, however, that kinetic critical phenomena are observable in heterogeneous reactions.