Search | Virtual Health Library

1.

The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas.

Wang, Quanxin; Ding, Song-Lin; Li, Yang; Royall, Josh; Feng, David; Lesnar, Phil; Graddis, Nile; Naeemi, Maitham; Facer, Benjamin; Ho, Anh; Dolbeare, Tim; Blanchard, Brandon; Dee, Nick; Wakeman, Wayne; Hirokawa, Karla E; Szafer, Aaron; Sunkin, Susan M; Oh, Seung Wook; Bernard, Amy; Phillips, John W; Hawrylycz, Michael; Koch, Christof; Zeng, Hongkui; Harris, Julie A; Ng, Lydia.

Cell ; 181(4): 936-953.e20, 2020 05 14.

Article in English | MEDLINE | ID: mdl-32386544

2.

A Biological Imitation Game.

Koch, Christof; Buice, Michael A.

Cell ; 163(2): 277-80, 2015 Oct 08.

Article in English | MEDLINE | ID: mdl-26451478

3.

Brain organoids, consciousness, ethics and moral status.

Jeziorski, Jacob; Brandt, Reuven; Evans, John H; Campana, Wendy; Kalichman, Michael; Thompson, Evan; Goldstein, Lawrence; Koch, Christof; Muotri, Alysson R.

Semin Cell Dev Biol ; 144: 97-102, 2023 07 30.

Article in English | MEDLINE | ID: mdl-35339359

4.

Hierarchical organization of cortical and thalamic connectivity.

Harris, Julie A; Mihalas, Stefan; Hirokawa, Karla E; Whitesell, Jennifer D; Choi, Hannah; Bernard, Amy; Bohn, Phillip; Caldejon, Shiella; Casal, Linzy; Cho, Andrew; Feiner, Aaron; Feng, David; Gaudreault, Nathalie; Gerfen, Charles R; Graddis, Nile; Groblewski, Peter A; Henry, Alex M; Ho, Anh; Howard, Robert; Knox, Joseph E; Kuan, Leonard; Kuang, Xiuli; Lecoq, Jerome; Lesnar, Phil; Li, Yaoyao; Luviano, Jennifer; McConoughey, Stephen; Mortrud, Marty T; Naeemi, Maitham; Ng, Lydia; Oh, Seung Wook; Ouellette, Benjamin; Shen, Elise; Sorensen, Staci A; Wakeman, Wayne; Wang, Quanxin; Wang, Yun; Williford, Ali; Phillips, John W; Jones, Allan R; Koch, Christof; Zeng, Hongkui.

Nature ; 575(7781): 195-202, 2019 11.

Article in English | MEDLINE | ID: mdl-31666704

5.

Removing independent noise in systems neuroscience data using DeepInterpolation.

Lecoq, Jérôme; Oliver, Michael; Siegle, Joshua H; Orlova, Natalia; Ledochowitsch, Peter; Koch, Christof.

Nat Methods ; 18(11): 1401-1408, 2021 11.

Article in English | MEDLINE | ID: mdl-34650233

6.

Shared and distinct transcriptomic cell types across neocortical areas.

Tasic, Bosiljka; Yao, Zizhen; Graybuck, Lucas T; Smith, Kimberly A; Nguyen, Thuc Nghi; Bertagnolli, Darren; Goldy, Jeff; Garren, Emma; Economo, Michael N; Viswanathan, Sarada; Penn, Osnat; Bakken, Trygve; Menon, Vilas; Miller, Jeremy; Fong, Olivia; Hirokawa, Karla E; Lathia, Kanan; Rimorin, Christine; Tieu, Michael; Larsen, Rachael; Casper, Tamara; Barkan, Eliza; Kroll, Matthew; Parry, Sheana; Shapovalova, Nadiya V; Hirschstein, Daniel; Pendergraft, Julie; Sullivan, Heather A; Kim, Tae Kyung; Szafer, Aaron; Dee, Nick; Groblewski, Peter; Wickersham, Ian; Cetin, Ali; Harris, Julie A; Levi, Boaz P; Sunkin, Susan M; Madisen, Linda; Daigle, Tanya L; Looger, Loren; Bernard, Amy; Phillips, John; Lein, Ed; Hawrylycz, Michael; Svoboda, Karel; Jones, Allan R; Koch, Christof; Zeng, Hongkui.

Nature ; 563(7729): 72-78, 2018 11.

Article in English | MEDLINE | ID: mdl-30382198

7.

Simulations of cortical networks using spatially extended conductance-based neuronal models.

Haufler, Darrell; Ito, Shinya; Koch, Christof; Arkhipov, Anton.

J Physiol ; 601(15): 3123-3139, 2023 08.

Article in English | MEDLINE | ID: mdl-36567262

8.

Fully integrated silicon probes for high-density recording of neural activity.

Jun, James J; Steinmetz, Nicholas A; Siegle, Joshua H; Denman, Daniel J; Bauza, Marius; Barbarits, Brian; Lee, Albert K; Anastassiou, Costas A; Andrei, Alexandru; Aydin, Çagatay; Barbic, Mladen; Blanche, Timothy J; Bonin, Vincent; Couto, João; Dutta, Barundeb; Gratiy, Sergey L; Gutnisky, Diego A; Häusser, Michael; Karsh, Bill; Ledochowitsch, Peter; Lopez, Carolina Mora; Mitelut, Catalin; Musa, Silke; Okun, Michael; Pachitariu, Marius; Putzeys, Jan; Rich, P Dylan; Rossant, Cyrille; Sun, Wei-Lung; Svoboda, Karel; Carandini, Matteo; Harris, Kenneth D; Koch, Christof; O'Keefe, John; Harris, Timothy D.

Nature ; 551(7679): 232-236, 2017 11 08.

Article in English | MEDLINE | ID: mdl-29120427

9.

Measuring Consciousness in the Intensive Care Unit.

Edlow, Brian L; Fecchio, Matteo; Bodien, Yelena G; Comanducci, Angela; Rosanova, Mario; Casarotto, Silvia; Young, Michael J; Li, Jian; Dougherty, Darin D; Koch, Christof; Tononi, Giulio; Massimini, Marcello; Boly, Melanie.

Neurocrit Care ; 38(3): 584-590, 2023 06.

Article in English | MEDLINE | ID: mdl-37029315

10.

Adaptation supports short-term memory in a visual change detection task.

Hu, Brian; Garrett, Marina E; Groblewski, Peter A; Ollerenshaw, Douglas R; Shang, Jiaqi; Roll, Kate; Manavi, Sahar; Koch, Christof; Olsen, Shawn R; Mihalas, Stefan.

PLoS Comput Biol ; 17(9): e1009246, 2021 09.

Article in English | MEDLINE | ID: mdl-34534203

11.

IIT, half masked and half disfigured.

Tononi, Giulio; Boly, Melanie; Grasso, Matteo; Hendren, Jeremiah; Juel, Bjorn E; Mayner, William G P; Marshall, William; Koch, Christof.

Behav Brain Sci ; 45: e60, 2022 03 23.

Article in English | MEDLINE | ID: mdl-35319429

12.

Neural correlates of consciousness: progress and problems.

Koch, Christof; Massimini, Marcello; Boly, Melanie; Tononi, Giulio.

Nat Rev Neurosci ; 17(5): 307-21, 2016 May.

Article in English | MEDLINE | ID: mdl-27094080

13.

Integrated information theory: from consciousness to its physical substrate.

Tononi, Giulio; Boly, Melanie; Massimini, Marcello; Koch, Christof.

Nat Rev Neurosci ; 17(7): 450-61, 2016 07.

Article in English | MEDLINE | ID: mdl-27225071

14.

Brain Modeling ToolKit: An open source software suite for multiscale modeling of brain circuits.

Dai, Kael; Gratiy, Sergey L; Billeh, Yazan N; Xu, Richard; Cai, Binghuang; Cain, Nicholas; Rimehaug, Atle E; Stasik, Alexander J; Einevoll, Gaute T; Mihalas, Stefan; Koch, Christof; Arkhipov, Anton.

PLoS Comput Biol ; 16(11): e1008386, 2020 11.

Article in English | MEDLINE | ID: mdl-33253147

15.

Brain Bridging.

Koch, Christof; House, Patrick.

Nature ; 2020 Aug 26.

Article in English | MEDLINE | ID: mdl-32848239

16.

Do not go gently into that good night: The dying brain and its paradoxically heightened electrical activity.

Koch, Christof.

Proc Natl Acad Sci U S A ; 120(22): e2305985120, 2023 05 30.

Article in English | MEDLINE | ID: mdl-37216513

17.

A mesoscale connectome of the mouse brain.

Oh, Seung Wook; Harris, Julie A; Ng, Lydia; Winslow, Brent; Cain, Nicholas; Mihalas, Stefan; Wang, Quanxin; Lau, Chris; Kuan, Leonard; Henry, Alex M; Mortrud, Marty T; Ouellette, Benjamin; Nguyen, Thuc Nghi; Sorensen, Staci A; Slaughterbeck, Clifford R; Wakeman, Wayne; Li, Yang; Feng, David; Ho, Anh; Nicholas, Eric; Hirokawa, Karla E; Bohn, Phillip; Joines, Kevin M; Peng, Hanchuan; Hawrylycz, Michael J; Phillips, John W; Hohmann, John G; Wohnoutka, Paul; Gerfen, Charles R; Koch, Christof; Bernard, Amy; Dang, Chinh; Jones, Allan R; Zeng, Hongkui.

Nature ; 508(7495): 207-14, 2014 Apr 10.

Article in English | MEDLINE | ID: mdl-24695228

18.

Scene-selective coding by single neurons in the human parahippocampal cortex.

Mormann, Florian; Kornblith, Simon; Cerf, Moran; Ison, Matias J; Kraskov, Alexander; Tran, Michelle; Knieling, Simeon; Quian Quiroga, Rodrigo; Koch, Christof; Fried, Itzhak.

Proc Natl Acad Sci U S A ; 114(5): 1153-1158, 2017 01 31.

Article in English | MEDLINE | ID: mdl-28096381

19.

High-density extracellular probes reveal dendritic backpropagation and facilitate neuron classification.

Jia, Xiaoxuan; Siegle, Joshua H; Bennett, Corbett; Gale, Samuel D; Denman, Daniel J; Koch, Christof; Olsen, Shawn R.

J Neurophysiol ; 121(5): 1831-1847, 2019 05 01.

Article in English | MEDLINE | ID: mdl-30840526

20.

Visual physiology of the layer 4 cortical circuit in silico.

Arkhipov, Anton; Gouwens, Nathan W; Billeh, Yazan N; Gratiy, Sergey; Iyer, Ramakrishnan; Wei, Ziqiang; Xu, Zihao; Abbasi-Asl, Reza; Berg, Jim; Buice, Michael; Cain, Nicholas; da Costa, Nuno; de Vries, Saskia; Denman, Daniel; Durand, Severine; Feng, David; Jarsky, Tim; Lecoq, Jérôme; Lee, Brian; Li, Lu; Mihalas, Stefan; Ocker, Gabriel K; Olsen, Shawn R; Reid, R Clay; Soler-Llavina, Gilberto; Sorensen, Staci A; Wang, Quanxin; Waters, Jack; Scanziani, Massimo; Koch, Christof.

PLoS Comput Biol ; 14(11): e1006535, 2018 11.

Article in English | MEDLINE | ID: mdl-30419013

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