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1.
Plant Dis ; : PDIS05230948RE, 2024 Jun 14.
Article in English | MEDLINE | ID: mdl-38319622

ABSTRACT

Turfgrass managers rely on fungicides to suppress snow mold diseases in areas with persistent snow cover, which are commonly applied once or twice in late fall prior to snow cover. Fungicide applications targeting snow mold are expected to control snow mold diseases for the duration of winter; however, climate change is increasing the frequency of winter rainfall and snowmelts and may alter the duration of snow mold control. A 3-year study was conducted in Madison, WI, to assess the impact of snow cover and antitranspirants on the persistence of the commonly used fungicides chlorothalonil and propiconazole. Snow cover, fungicide treatment, and the use of antitranspirants had minimal impacts on fungicide persistence and disease control. The most important factors influencing persistence of the fungicides were snowmelt and winter rainfall events, yet antitranspirants demonstrated modest evidence of extending chlorothalonil persistence in certain years. These results demonstrate that increasing snowmelt and winter rainfall events associated with climate change will increase dissipation of fungicides used for snow mold suppression, which will likely impact disease control.[Formula: see text] Copyright © 2024 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.

2.
Biol Lett ; 19(3): 20220534, 2023 03.
Article in English | MEDLINE | ID: mdl-36883314

ABSTRACT

Body size and feeding morphology influence how animals partition themselves within communities. We tested the relationships among sex, body size, skull morphology and foraging in sympatric otariids (eared seals) from the eastern North Pacific Ocean, the most diverse otariid community in the world. We recorded skull measurements and stable carbon (δ13C) and nitrogen (δ15N) isotope values (proxies for foraging) from museum specimens in four sympatric species: California sea lions (Zalophus californianus), Steller sea lions (Eumetopias jubatus), northern fur seals (Callorhinus ursinus) and Guadalupe fur seals (Arctocephalus townsendi). Species and sexes had statistical differences in size, skull morphology and foraging significantly affecting the δ13C values. Sea lions had higher δ13C values than fur seals, and males of all species had higher values than females. The δ15N values were correlated with species and feeding morphology; individuals with stronger bite forces had higher δ15N values. We also found a significant community-wide correlation between skull length (indicator of body length), and foraging, with larger individuals having nearshore habitat preferences, and consuming higher trophic level prey than smaller individuals. Still, there was no consistent association between these traits at the intraspecific level, indicating that other factors might account for foraging variability.


Subject(s)
Fur Seals , Sea Lions , Animals , Female , Male , Body Size , Head , Skull
3.
Plant Dis ; 106(9): 2441-2446, 2022 Sep.
Article in English | MEDLINE | ID: mdl-35188416

ABSTRACT

Magnaporthiopsis meyeri-festucae is a recently identified root-infecting pathogen of fine fescue (Festuca spp.) turfgrasses. Although it is phylogenetically similar to other root-infecting turfgrass pathogens such as M. poae, management of M. meyeri-festucae is distinct and highlights the need for fast and accurate identification. The objective of this study was to develop a rapid detection method for M. meyeri-festucae using recombinase polymerase amplification (RPA) to assist turfgrass managers in identifying the disease in the field and facilitate further epidemiological research on the pathogen. Three isolates of M. meyeri-festucae and eight isolates from four related Magnaporthiopsis species were used to test the specificity of the RPA assay targeting M. meyeri-festucae. Rapid visualization of the RPA assay results using a mixture of purified amplicon and SYBR-Safe fluorescence emitting asymmetrical cyanine dye showed that the assay was effective at detecting M. meyeri-festucae on turfgrass roots with no observed incidence of false positives or false negatives. The assay also differentiated between M. meyeri-festucae and other Magnaporthiopsis species, although overall sensitivity was lower compared with a PCR-based method. The RPA assay successfully detected M. meyeri-festucae following inoculation onto and grinding of turfgrass roots, indicating possible use as a rapid field diagnostic tool for turfgrass managers. The fast and accurate RPA M. meyeri-festucae detection method presented here will be used for additional field and laboratory applications that will help improve the management of this emerging pathogen.


Subject(s)
Ascomycota , Recombinases , Ascomycota/genetics , Nucleic Acid Amplification Techniques/methods , Sensitivity and Specificity
4.
Appl Environ Microbiol ; 87(10)2021 04 27.
Article in English | MEDLINE | ID: mdl-33741622

ABSTRACT

Dollar spot, caused by the fungal pathogen Clarireedia spp., is an economically important foliar disease of amenity turfgrass in temperate climates worldwide. This disease often occurs in a highly variable manner, even on a local scale with relatively uniform environmental conditions. The objective of this study was to investigate mechanisms behind this local variation, focusing on contributions of the soil and rhizosphere microbiome. Turfgrass, rhizosphere, and bulk soil samples were collected from within a 256-m2 area of healthy turfgrass, transported to a controlled environment chamber, and inoculated with Clarireedia jacksonii Bacterial communities were profiled by targeting the 16S rRNA gene, and 16 different soil chemical properties were assessed. Despite their initial uniform appearance, the samples differentiated into highly susceptible and moderately susceptible groups following inoculation in the controlled environment chamber. The highly susceptible samples harbored a unique rhizosphere microbiome with suggestively lower relative abundance of putative antibiotic-producing bacterial taxa and higher predicted abundance of genes associated with xenobiotic biodegradation pathways. In addition, stepwise regression revealed that bulk soil iron content was the only significant soil characteristic that positively regressed with decreased dollar spot susceptibility during the peak disease development stage. These findings suggest that localized variation in soil iron induces the plant to select for a particular rhizosphere microbiome that alters the disease outcome. More broadly, further research in this area may indicate how plot-scale variability in soil properties can drive variable plant disease development through alterations in the rhizosphere microbiome.IMPORTANCE Dollar spot is the most economically important disease of amenity turfgrass, and more fungicides are applied targeting dollar spot than any other turfgrass disease. Dollar spot symptoms are small (3 to 5 cm), circular patches that develop in a highly variable manner within plot scale even under seemingly uniform conditions. The mechanism behind this variable development is unknown. This study observed that differences in dollar spot development over a 256-m2 area were associated with differences in bulk soil iron concentration and correlated with a particular rhizosphere microbiome. These findings provide interesting avenues for future research to further characterize the mechanisms behind the highly variable development of dollar spot, which may inform innovative control strategies. Additionally, these results suggest that small changes in soil properties can alter plant activity and hence the plant-associated microbial community, which has important implications for a broad array of agricultural and horticultural plant pathosystems.


Subject(s)
Agrostis/microbiology , Ascomycota , Iron/analysis , Plant Diseases/microbiology , Rhizosphere , Soil Microbiology , Soil/chemistry , Bacteria/genetics , Bacteria/isolation & purification , Microbiota , RNA, Ribosomal, 16S/genetics
5.
Stereotact Funct Neurosurg ; 99(4): 313-321, 2021.
Article in English | MEDLINE | ID: mdl-34120107

ABSTRACT

BACKGROUND: In this study, we describe a technique of optimizing the accuracy of frameless deep brain stimulation (DBS) lead placement through the use of a cannula poised at the entry to predict the location of the fully inserted device. This allows real-time correction of error prior to violation of the deep gray matter. METHODS: We prospectively gathered data on radial error during the operative placements of 40 leads in 28 patients using frameless fiducial-less DBS surgery. Once the Nexframe had been aligned to target, a cannula was inserted through the center channel of the BenGun until it traversed the pial surface and a low-dose O-arm spin was obtained. Using 2 points along the length of the imaged cannula, a trajectory line was projected to target depth. If lead location could be improved, the cannula was inserted through an alternate track in the BenGun down to target depth. After intraoperative microelectrode recording and clinical assessment, another O-arm spin was obtained to compare the location of the inserted lead with the location predicted by the poised cannula. RESULTS: The poised cannula projection and the actual implant had a mean radial discrepancy of 0.75 ± 0.64 mm. The poised cannula projection identified potentially clinically significant errors (avg 2.07 ± 0.73 mm) in 33% of cases, which were reduced to a radial error of 1.33 ± 0.66 mm (p = 0.02) after correction using an alternative BenGun track. The final target to implant error for all 40 leads was 1.20 ± 0.52 mm with only 2.5% of errors being >2.5 mm. CONCLUSION: The poised cannula technique results in a reduction of large errors (>2.5 mm), resulting in a decline in these errors to 2.5% of implants as compared to 17% in our previous publication using the fiducial-less method and 4% using fiducial-based methods of DBS lead placement.


Subject(s)
Deep Brain Stimulation , Surgery, Computer-Assisted , Cannula , Humans , Imaging, Three-Dimensional , Tomography, X-Ray Computed
6.
Plant Dis ; 105(2): 276-284, 2021 Feb.
Article in English | MEDLINE | ID: mdl-32787654

ABSTRACT

Dollar spot is caused by the fungus Clarireedia spp. and is the most economically important disease of golf course turfgrass in temperate regions of the United States. Previous research has demonstrated that nitrogen (N) fertilization may reduce dollar spot severity, but the results have been inconsistent, and the impact of N as part of repeated foliar fertilization applications to golf course putting greens remains unclear. Two independent trials were replicated in Madison, Wisconsin and Glenview, Illinois in the 2015, 2016, and 2017 growing seasons. The objective of the first trial was to evaluate the effect of four different N rates applied as urea (4.9, 9.8, 19.4, and 29.3 kg N/ha applied every 2 weeks) on dollar spot severity, and the objective of the second trial was to evaluate the effect of three N sources (calcium nitrate, ammonium sulfate, and ammonium nitrate applied every 2 weeks) on dollar spot severity. Results from the N rate trial at both locations indicated that only the highest (29.3 kg N/ha) rate consistently reduced dollar spot severity relative to the nontreated control. Nitrogen source had minimal and inconsistent impacts on dollar spot severity based on location and year. Although these results show that meaningful reductions in dollar spot severity can be achieved by manipulating N fertilizer application rates, the rate of N needed for disease suppression may be impractical for most superintendents to apply and result in undesirable nontarget impacts.


Subject(s)
Agrostis , Ascomycota , Illinois , Nitrogen/analysis , United States , Wisconsin
7.
Epilepsia ; 61(8): 1723-1734, 2020 08.
Article in English | MEDLINE | ID: mdl-32777090

ABSTRACT

OBJECTIVE: Magnetic resonance imaging (MRI)-guided laser interstitial thermal therapy (MRg-LITT) is an alternative to open epilepsy surgery. We assess safety and effectiveness of MRg-LITT for extratemporal lobe epilepsy (ETLE) in patients who are considered less favorable for open resection. METHODS: We retrospectively reviewed sequential cases of patients with focal ETLE who underwent MRg-LITT between 2012 and 2019. Epileptogenic zones were determined from standard clinical and imaging data ± stereoelectroencephalography (SEEG). Standard stereotactic techniques, MRI thermometry, and a commercial laser thermal therapy system were used for ablations. Anatomic MRI was used to calculate ablation volumes. Clinical outcomes were determined longitudinally. RESULTS: Thirty-five patients with mean epilepsy duration of 21.3 ± 12.2 years underwent MRg-LITT for focal ETLE at a mean age 36.4 ± 12.7 years. A mean 2.59 ± 1.45 trajectories per patient were used to obtain ablation volumes of 8.8 ± 7.5 cm3 . Mean follow-up was 27.3 ± 19.5 months. Of 32 patients with >12 months of follow-up, 17 (53%) achieved good outcomes (Engel class I + II) of whom 14 (44%) were Engel class I. Subgroup analysis revealed better outcomes for patients with lesional ETLE than for those who were nonlesional, multifocal, or who had failed prior interventions (P = .02). Of 13 patients showing favorable seizure-onset patterns (localized low voltage fast activity or rhythmic spiking on SEEG) prior to ablation, 9 (69%) achieved good outcomes, whereas only 3 of 11 (27%) who show other slower onset patterns achieved good outcomes. Minor adverse events included six patients with transient sensorimotor neurologic deficits and four patients with asymptomatic hemorrhages along the fiber tract. Major adverse events included one patient with a brain abscess that required stereotactic drainage and one patient with persistent hypothalamic obesity. Three deaths-two seizure-associated and one suicide-were unrelated to surgical procedures. SIGNIFICANCE: MRI-guided laser interstitial thermal therapy (or MRg-LITT) was well-tolerated and yielded good outcomes in a heterogeneous group of ETLE patients. Lesional epilepsy and favorable seizure-onset patterns on SEEG predicted higher likelihoods of success.


Subject(s)
Drug Resistant Epilepsy/surgery , Epilepsies, Partial/surgery , Laser Therapy/methods , Magnetic Resonance Imaging/methods , Adult , Epilepsy, Frontal Lobe/surgery , Female , Gyrus Cinguli/surgery , Humans , Hypothalamus/surgery , Male , Middle Aged , Occipital Lobe/surgery , Parietal Lobe/surgery , Stereotaxic Techniques , Surgery, Computer-Assisted/methods , Young Adult
8.
Plant Dis ; 104(12): 3118-3123, 2020 Dec.
Article in English | MEDLINE | ID: mdl-33058719

ABSTRACT

Dollar spot is one of the most economically important diseases of turfgrasses. Recent taxonomic revisions have placed the dollar spot fungal pathogens in the new genus Clarireedia, with five species described. The main goal of this study was to develop a quantitative real-time PCR (qPCR) molecular detection assay based on the internal transcribed spacer (ITS) of the ribosomal RNA genes to quantify the abundance of Clarireedia spp. from environmental (field) samples. The qPCR assay was able to detect isolates of the four tested Clarireedia spp. but did not cross react with nontarget fungi, including closely related taxa, other turfgrass pathogens, or other fungal species commonly isolated from turfgrass. The assay is capable of detecting as little as 38.0 fg (3.8 × 10-14 g) of Clarireedia genomic DNA in 3 h. The qPCR assay detected Clarireedia spp. in both symptomatic and asymptomatic creeping bentgrass (Agrostis stolonifera) foliar tissue. Clarireedia spp. were rarely detected in the thatch or soil, indicating that these pathogens are not widely distributed in these areas of the environment. The fact that the pathogen was detected in asymptomatic tissue suggests that creeping bentgrass may be able to tolerate a certain quantity of the pathogens in leaves before disease symptoms appear; however, further research is needed to validate this hypothesis.


Subject(s)
Agrostis , Ascomycota , Agrostis/genetics , Ascomycota/genetics , Plant Diseases , Plant Leaves , Real-Time Polymerase Chain Reaction
9.
Oecologia ; 188(4): 977-989, 2018 Dec.
Article in English | MEDLINE | ID: mdl-30349939

ABSTRACT

Stable isotopes are important ecological tools, because the carbon and nitrogen isotopic composition of consumer tissue reflects the diet. Measurements of isotopes of individual amino acids can disentangle the effects of consumer physiology from spatiotemporal variation in dietary isotopic values. However, this approach requires knowledge of assimilation patterns of dietary amino acids. We reared leopard sharks (Triakis semifasciata) on diets of squid (Loligo opalescens; 1250 days; control sharks) or squid then tilapia (Oreochromis sp.; switched at 565 days; experimental sharks) to evaluate consumer-diet discrimination factors for amino acids in muscle tissue. We found that control sharks exhibited lower nitrogen isotope discrimination factors (∆15N) than most previous consumer studies, potentially because of urea recycling. Control sharks also had large carbon isotope discrimination factors (∆13C) for three essential amino acids, suggesting microbial contributions or fractionation upon assimilation. Compared to controls, experimental sharks exhibited higher ∆13C values for four amino acids and ∆15N values for seven amino acids, corresponding with differences between diets in δ13C and δ15N values. This suggests that not all amino acids in experimental sharks had reached steady state, contrary to the conclusion of a bulk isotope study of these sharks. Our results imply that (1) the magnitude of a shift in dietary δ13C and δ15N values temporarily influences the appearance of discrimination factors; (2) slow turnover of amino acid isotopes in elasmobranch muscle precludes inferences about seasonal dietary changes; (3) elasmobranch discrimination factors for amino acids may be affected by urea recycling and microbial contributions of amino acids.


Subject(s)
Diet , Sharks , Amino Acids , Animals , Carbon Isotopes , Nitrogen Isotopes
10.
Plant Dis ; 102(5): 955-963, 2018 May.
Article in English | MEDLINE | ID: mdl-30673379

ABSTRACT

Crown rust (caused by Puccinia coronata) and stem rust (caused by P. graminis) are two common and destructive diseases of turfgrass in the United States. Crown rust has been associated with perennial ryegrass and stem rust with Kentucky bluegrass when identified based solely on fungal morphology. However, recent studies using molecular identification methods have indicated the host-pathogen relationship of rusts on turf to be more complex. Our primary objective was to quickly and accurately identify P. coronata and P. graminis in symptomatic turfgrass leaves over 3 years on turfgrass samples from across the Midwestern United States. Between 2013 and 2015, 413 samples of symptomatic cool-season turfgrass from Wisconsin and surrounding states were screened using real-time polymerase chain reaction. Of these samples, 396 were Kentucky bluegrass and 17% of them contained P. coronata, 69% contained P. graminis, and 13% contained both P. coronata and P. graminis. In addition, both year and location effects were observed on the distribution of Puccinia spp. collected annually from two locations in southern Wisconsin. This research supports previous conclusions that have identified variability among P. graminis and P. coronata host relationships on turfgrass, and further demonstrates that rust fungal populations on Kentucky bluegrass may not be consistent between locations in the same year or over multiple years at the same location. The increasing evidence of variation in the turfgrass rust populations will likely affect future rust management and turfgrass breeding efforts.


Subject(s)
Basidiomycota/genetics , Plant Diseases/microbiology , Poaceae/microbiology , Genome, Fungal , Midwestern United States , Phylogeny , Real-Time Polymerase Chain Reaction , Sensitivity and Specificity , Time Factors
11.
Proc Biol Sci ; 284(1861)2017 Aug 30.
Article in English | MEDLINE | ID: mdl-28855359

ABSTRACT

The arrival of humans to Antarctica's Ross Sea (100+ years ago) led to a slow, but sustained increase in human activities in the area. To investigate if human presence has influenced the structure of the ecosystem over the last century, we compared historical (ca 100 years old) and modern samples of a sentinel species, the Weddell seal (Leptonychotes weddellii), using both bulk tissue and compound-specific stable isotope analysis. The historical isotopic niche of Weddell seals was over five times larger than the modern niche. The isotopic values of individual amino acids showed a clear segregation between historical and modern samples, indicative of differences at the base of the trophic web. Further, we found no significant differences in the trophic position of Weddell seals between the two periods. Our study revealed that the Ross Sea has undergone detectable changes (i.e. in the primary producers community) in the last century, but the presence of humans has not disrupted trophic interactions supporting Weddell seals.


Subject(s)
Ecosystem , Food Chain , Seals, Earless , Sentinel Species , Animals , Antarctic Regions , Isotopes/analysis , Time Factors
12.
Proc Natl Acad Sci U S A ; 111(40): 14472-7, 2014 Oct 07.
Article in English | MEDLINE | ID: mdl-25201967

ABSTRACT

The dynamics of ecosystem collapse are fundamental to determining how and why biological communities change through time, as well as the potential effects of extinctions on ecosystems. Here, we integrate depictions of mammals from Egyptian antiquity with direct lines of paleontological and archeological evidence to infer local extinctions and community dynamics over a 6,000-y span. The unprecedented temporal resolution of this dataset enables examination of how the tandem effects of human population growth and climate change can disrupt mammalian communities. We show that the extinctions of mammals in Egypt were nonrandom and that destabilizing changes in community composition coincided with abrupt aridification events and the attendant collapses of some complex societies. We also show that the roles of species in a community can change over time and that persistence is predicted by measures of species sensitivity, a function of local dynamic stability. To our knowledge, our study is the first high-resolution analysis of the ecological impacts of environmental change on predator-prey networks over millennial timescales and sheds light on the historical events that have shaped modern animal communities.


Subject(s)
Colony Collapse/history , Ecosystem , Extinction, Biological , Paleontology , Animals , Climate Change/history , Egypt, Ancient , Food Chain , History, Ancient , Mammals , Population Dynamics
13.
J Environ Qual ; 46(3): 490-497, 2017 May.
Article in English | MEDLINE | ID: mdl-28724094

ABSTRACT

Maintaining healthy turfgrass often results in the use of pesticides to manage weed, insect, and disease pests. To identify and understand potential nontarget impacts of pesticide usage while still maintaining attractive and functional turfgrass sites, it is important to improve our understanding of how pesticides degrade in various environments throughout the growing season. Temperature heavily influences microbial community composition and activity, and the microbial community often heavily influences pesticide degradation in soil ecosystems. Pesticide transformation products generated through the action of soil microbial degradation networks can vary in their toxicity, with the potential result that a pesticide applied in the spring at 10°C could produce different transformation products with different toxicological impacts than the sample pesticide applied to the same site at 22°C. The objective of this review is to examine past research surrounding soil microbial activity related to pesticide degradation and provide a foundation for how the soil microbiome interacts with pesticides and how seasonal temperature variations may influence those interactions.


Subject(s)
Pesticides/chemistry , Soil Microbiology , Soil Pollutants/chemistry , Biodegradation, Environmental , Soil , Temperature
14.
Proc Biol Sci ; 282(1814)2015 Sep 07.
Article in English | MEDLINE | ID: mdl-26336175

ABSTRACT

The end of the Pleistocene was marked by the extinction of almost all large land mammals worldwide except in Africa. Although the debate on Pleistocene extinctions has focused on the roles of climate change and humans, the impact of perturbations depends on properties of ecological communities, such as species composition and the organization of ecological interactions. Here, we combined palaeoecological and ecological data, food-web models and community stability analysis to investigate if differences between Pleistocene and modern mammalian assemblages help us understand why the megafauna died out in the Americas while persisting in Africa. We show Pleistocene and modern assemblages share similar network topology, but differences in richness and body size distributions made Pleistocene communities significantly more vulnerable to the effects of human arrival. The structural changes promoted by humans in Pleistocene networks would have increased the likelihood of unstable dynamics, which may favour extinction cascades in communities facing extrinsic perturbations. Our findings suggest that the basic aspects of the organization of ecological communities may have played an important role in major extinction events in the past. Knowledge of community-level properties and their consequences to dynamics may be critical to understand past and future extinctions.


Subject(s)
Biota , Extinction, Biological , Food Chain , Mammals/physiology , Africa , Animals , Climate Change , Ecosystem , Fossils , Human Activities , Mammals/classification , Paleontology
15.
Psychother Psychosom ; 84(5): 273-83, 2015.
Article in English | MEDLINE | ID: mdl-26278327

ABSTRACT

BACKGROUND: Benzodiazepines are not all the same concerning their risk of high-dose use. METHODS: We studied benzodiazepine use from the Luxembourg national records of all insured. We calculated the 12-year prevalence from 1995 to 2007. Benzodiazepine users were divided into 3 groups, short-term with no longer than 3-month intake, intermediate with multiple administration with at least a 1-year interruption, and continuous who never stopped. A high-dose user (HDU) was defined as a patient who received a higher dose than the yearly maximum usual therapeutic dose. RESULTS: An average of 16.0% of the adult insured population received at least 1 benzodiazepine annually, 42.9% were older than 50, 55.9% were women, and 5.4% were HDUs. We found that 32.6% were short-term users, 49.0% intermediate and 18.4% continuous. Compared to diazepam, hypnotics had higher risks for high-dose use in at least 1 age group at first-benzodiazepine intake, the risks being greater in elderly subjects and women, the highest risks being with triazolam (adjusted odds ratio = 215.85; 95% confidence interval = 133.75-348.35) in the 69- to 105-year-old group at first-benzodiazepine intake. Anxiolytics had a low risk except for alprazolam and prazepam in the 69- to 105-year-old group at first-benzodiazepine intake, clonazepam and clobazam had the lowest risk in 18- to 43-year-olds at first-benzodiazepine intake. Alprazolam had dispensed volumes increased by threefold over the 12-year period. CONCLUSION: All hypnotics had higher risks for high-dose use compared to diazepam in continuous users. Two anxiolytics, clonazepam and clobazam, had the lowest risks. Hypnotics and the triazolobenzodiazepines alprazolam and triazolam were most problematic. Elderly subjects and women are at greater risks.


Subject(s)
Anti-Anxiety Agents/administration & dosage , Benzodiazepines/administration & dosage , Hypnotics and Sedatives/administration & dosage , Adult , Aged , Aged, 80 and over , Drug Tolerance , Drug Utilization , Female , Humans , Male , Middle Aged , Registries , Retrospective Studies
16.
Proc Biol Sci ; 281(1779): 20133078, 2014 Mar 22.
Article in English | MEDLINE | ID: mdl-24478305

ABSTRACT

Genetic diversity provides the raw material for populations to respond to changing environmental conditions. The evolution of diversity within populations is based on the accumulation of mutations and their retention or loss through selection and genetic drift, while migration can also introduce new variation. However, the extent to which population growth and sustained large population size can lead to rapid and significant increases in diversity has not been widely investigated. Here, we assess this empirically by applying approximate Bayesian computation to a novel ancient DNA dataset that spans the life of a southern elephant seal (Mirounga leonina) population, from initial founding approximately 7000 years ago to eventual extinction within the past millennium. We find that rapid population growth and sustained large population size can explain substantial increases in population genetic diversity over a period of several hundred generations, subsequently lost when the population went to extinction. Results suggest that the impact of diversity introduced through migration was relatively minor. We thus demonstrate, by examining genetic diversity across the life of a population, that environmental change could generate the raw material for adaptive evolution over a very short evolutionary time scale through rapid establishment of a large, stable population.


Subject(s)
Founder Effect , Seals, Earless/genetics , Adaptation, Biological/genetics , Animals , Bayes Theorem , Biological Evolution , Extinction, Biological , Female , Genetic Drift , Population Dynamics
17.
Rapid Commun Mass Spectrom ; 28(24): 2744-52, 2014 Dec 30.
Article in English | MEDLINE | ID: mdl-25380497

ABSTRACT

RATIONALE: For bulk carbon and nitrogen isotope analysis of dentin, samples are typically decalcified. Since the non-protein carbon in dentin is low, whole sample analysis may produce reliable data. Compound-specific isotope analysis (CSIA) of bone and tooth dentin protein is a powerful tool for reconstructing the flow of carbon and nitrogen in modern and past food webs. Decalcification has also been used to prepare bone and dentin samples for CSIA, but the effects of this process on bulk dentin, amino acid composition, and their specific isotope values are not known. METHODS: The bulk isotope values of raw and decalcified dentin from a sperm whale tooth were measured to determine the effects of decalcification and the accuracy of untreated dentin results. CSIA was also performed on decalcified and raw dentin to examine differences in the amino acid isotope values and molar composition between these two approaches. RESULTS: Analysis of raw dentin yields precise and accurate bulk isotope measurements for this animal. The isotopic values of decalcified samples and raw dentin for individual amino acids were similar, but the average of the isotope value offsets between the two sample types was significant. The presence of inorganic material complicated raw sample processing for individual amino acid isotope values, and may have contributed to the isotopic differences between decalcified and raw samples. CONCLUSIONS: Decalcification is not needed to measure bulk isotope values in dentin from this modern odontocete, probably because the lipid and carbonate concentrations are low and the carbon isotope values of dentin protein and carbonate are similar. This method should not be applied in some cases (e.g., with fossil dentin and modern bone). Decalcification should still be used prior to CSIA since significant matrix issues occur with raw dentin processing and decalcification does not alter the amino acid molar composition or isotopic values of dentin.


Subject(s)
Carbon Isotopes/analysis , Dentin/chemistry , Nitrogen Isotopes/analysis , Amino Acids/chemistry , Animals , Mass Spectrometry , Specimen Handling , Sperm Whale , Tooth Calcification
18.
J Neurosurg ; : 1-11, 2024 Jul 05.
Article in English | MEDLINE | ID: mdl-38968618

ABSTRACT

OBJECTIVE: Deep brain stimulation (DBS) targeting the globus pallidus interna (GPi) has been shown to significantly improve motor symptoms for the treatment of medication-refractory Parkinson's disease. Yet, heterogeneity in clinical outcomes persists, possibly due to suboptimal target identification within the GPi. By leveraging robust sampling of the GPi and 6-month postsurgical outcomes, this study aims to determine optimal symptom-specific GPi DBS targets. METHODS: In this study, the authors analyzed the anatomical lead location and 6-month postsurgical, double-blinded outcome measures of 86 patients who underwent bilateral GPi DBS. These patients were selected from the multicenter Veterans Affairs (VA)/National Institutes of Neurological Disorders and Stroke (NINDS) Cooperative Studies Program (CSP) 468 study to identify the optimal target zones ("sweet spots") for the control of overall motor (United Parkinson's Disease Rating Scale [UPDRS]-III), axial, tremor, rigidity, and bradykinesia symptoms. Lead coordinates were normalized to Montreal Neurological Institute space and the optimal target zones were identified and validated using a leave-one-patient-out approach. RESULTS: The authors' findings revealed statistically significant optimal target zones for UPDRS-III (R = 0.37, p < 0.001), axial (R = 0.22, p = 0.042), rigidity (R = 0.20, p = 0.021), and bradykinesia (R = 0.23, p = 0.004) symptoms. These zones were localized within the primary motor and premotor subdivisions of the GPi. Interestingly, these zones extended beyond the GPi lateral border into the GPi-globus pallidus externa (GPe) lamina and into the GPe, but they did not reach the GPi ventral border, challenging traditional surgical approaches based on pallidotomies. CONCLUSIONS: Drawing upon a robust dataset, this research effectively delineates specific optimal target zones for not only overall motor improvement but also symptom subscores. These insights hold the potential to enhance the precision of targeting in subsequent bilateral GPi DBS surgical procedures.

19.
Am J Biol Anthropol ; : e24981, 2024 Jun 03.
Article in English | MEDLINE | ID: mdl-38828504

ABSTRACT

OBJECTIVES: Chimpanzees (Pan troglodytes) are patrilocal, with males remaining in their natal community and females dispersing when they reach sexual maturity. However, the details of female chimpanzee dispersal, such as their possible origin, are difficult to assess, even in habituated communities. This study investigates the utility of 87Sr/86Sr analysis for (1) assessing Sr baseline differences between chimpanzee territories and (2) identifying the status (immigrant or natal) of females of unknown origin within the territories of five neighboring communities in Taï National Park (Côte d'Ivoire). MATERIALS AND METHODS: To create a local Sr isoscape for the Taï Chimpanzee Project (TCP) study area, we sampled environmental samples from TCP-established territories (n = 35). To assess dispersal patterns, 34 tooth enamel samples (one per individual) were selected from the Taï chimpanzee skeletal collection. 87Sr/86Sr analysis was performed on all 69 samples at the W.M. Keck Lab. The theoretical density and overlap of chimpanzee communities as well as generalized linear mixed models (GLMMs) were used to test each question. RESULTS: 87Sr/86Sr ratios for natal male chimpanzees ranged from 0.71662 to 0.72187, which is well within the corresponding environmental baseline range of 0.70774-0.73460. The local Sr isoscapes fit was estimated with the root-mean-square error value, which was 0.0048 (22% of the whole 87Sr/86Sr data range). GLMMs identified significant differences in 87Sr/86Sr ratios between natal and unknown North community origin groups, suggesting that after 1980, females of unknown origin could be immigrants to North community (n = 7, z-ratio = -4.08, p = 0.0001, power = 0.94). DISCUSSION: This study indicates that 87Sr/86This study indicates that 87Sr/86Sr analysis can successfully identify immigrant females in skeletal collections obtained from wild chimpanzee communities, enabling the tracking of female dispersal patterns historically. There are, however, significant limitations within the scope of this study, such as (1) the absence of reliable maps for the TCP study area, (2) limited capacity for environmental sampling, (3) small sample sizes, and (4) tooth formation in wild chimpanzees.

20.
Proc Biol Sci ; 280(1762): 20130239, 2013 Jul 07.
Article in English | MEDLINE | ID: mdl-23658198

ABSTRACT

Species interactions form food webs, impacting community structure and, potentially, ecological dynamics. It is likely that global climatic perturbations that occur over long periods of time have a significant influence on species interaction patterns. Here, we integrate stable isotope analysis and network theory to reconstruct patterns of trophic interactions for six independent mammalian communities that inhabited mammoth steppe environments spanning western Europe to eastern Alaska (Beringia) during the Late Pleistocene. We use a Bayesian mixing model to quantify the contribution of prey to the diets of local predators, and assess how the structure of trophic interactions changed across space and the Last Glacial Maximum (LGM), a global climatic event that severely impacted mammoth steppe communities. We find that large felids had diets that were more constrained than those of co-occurring predators, and largely influenced by an increase in Rangifer abundance after the LGM. Moreover, the structural organization of Beringian and European communities strongly differed: compared with Europe, species interactions in Beringian communities before--and possibly after--the LGM were highly modular. We suggest that this difference in modularity may have been driven by the geographical insularity of Beringian communities.


Subject(s)
Climate Change , Environment , Food Chain , Mammals/physiology , Alaska , Animals , Bayes Theorem , Biota , Carbon Isotopes/metabolism , Diet , Europe , Fossils , Nitrogen Isotopes/metabolism
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