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1.
Genomics ; 114(4): 110432, 2022 07.
Article in English | MEDLINE | ID: mdl-35843383

ABSTRACT

Soyasaponin is a type of glycoside such as steroids, steroidal alkaloids or triterpenes, which enhance the body immunity. In order to efficiently identify genes and markers related to the soyasaponin, we used a 180K Axiom® SoyaSNP array and whole genome resequencing data from the Korean soybean core collection. As a result of conducting GWAS for group A soyasaponin (Aa and Ab derivatives), 16 significant common markers associated with Aa and Ab derivatives were mapped to chromosome 7, and three candidate genes including Glyma.07g254600 were detected. The functional haplotypes for candidate genes showed that Aa and Ab contents were mainly determined by alleles of AX-90322128, the marker of Glyma.07g254600. In addition, 14 novel SNPs variants closely associated with Aa and Ab derivatives were discovered for Glyma.07g254600. Therefore, the results of this study that identified soyasaponin-associated markers and useful genes utilizing various genomic information could provide insight into functional soybean breeding.


Subject(s)
Glycine max , Polymorphism, Single Nucleotide , Genome-Wide Association Study/methods , Plant Breeding , Quantitative Trait Loci , Glycine max/genetics
2.
Article in English | MEDLINE | ID: mdl-35130136

ABSTRACT

A Gram-stain-negative, facultatively anaerobic, motile by gliding, rod-shaped, oxidase- and catalase-positive bacterial strain, designated BB8T, was isolated from the stems of a Korean soybean cultivar (Glycine max L. cv. Gwangan). The strain produced a yellow pigment on tryptic soy agar. Growth of strain BB8T occurred at pH 5.0-8.0 (optimum, pH 7.0), at 10-35 °C (optimum, 25-30 °C) and in the presence of 0-1 % (w/v) NaCl (optimum, 0.5%). Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain BB8T formed a lineage within the genus Flavobacterium and was most closely related to Flavobacterium artemisiae SYP-B1015T (96.9 % 16S rRNA gene sequence similarity) and Flavobacterium ustbae T13T (96.8%). The complete genome sequence of strain BB8T was 5 513 159 bp long with a G+C content of 34.1 mol%. The major fatty acids (>10 %) of strain BB8T were iso-C15 : 0 (21 %), summed feature 3 (comprising C16 : 1 ω7c and/or C16 : 1 ω6c, 20.3%) and iso-C16 : 0 3-OH (13.7%). The predominant polar lipids were phosphatidylethanolamine and unidentified aminolipids, and the major respiratory quinone was menaquinone-6. Based on these phenotypic, genotypic and chemotaxonomic characteristics, strain BB8T is considered to represent a novel species of the genus Flavobacterium, for which the name Flavobacterium endoglycinae sp. nov. is proposed. The type strain is BB8T (=KCTC 82167T=CCTCC AB 2020070T).


Subject(s)
Flavobacterium , Glycine max , Phylogeny , Bacterial Typing Techniques , Base Composition , DNA, Bacterial/genetics , Fatty Acids/chemistry , Flavobacterium/classification , Flavobacterium/isolation & purification , Phospholipids/chemistry , Plant Stems/microbiology , RNA, Ribosomal, 16S/genetics , Republic of Korea , Sequence Analysis, DNA , Glycine max/microbiology , Vitamin K 2/analogs & derivatives , Vitamin K 2/chemistry
3.
Nano Lett ; 19(4): 2231-2242, 2019 04 10.
Article in English | MEDLINE | ID: mdl-30873838

ABSTRACT

Bexarotene has shown inhibition of lung and mammary gland tumorigenesis in preclinical models and in clinical trials. The main side effects of orally administered bexarotene are hypertriglyceridemia and hypercholesterolemia. We previously demonstrated that aerosolized bexarotene administered by nasal inhalation has potent chemopreventive activity in a lung adenoma preclinical model without causing hypertriglyceridemia. To facilitate its future clinical translation, we modified the formula of the aerosolized bexarotene with a clinically relevant solvent system. This optimized aerosolized bexarotene formulation was tested against lung squamous cell carcinoma mouse model and lung adenocarcinoma mouse model and showed significant chemopreventive effect. This new formula did not cause visible signs of toxicity and did not increase plasma triglycerides or cholesterol. This aerosolized bexarotene was evenly distributed to the mouse lung parenchyma, and it modulated the microenvironment in vivo by increasing the tumor-infiltrating T cell population. RNA sequencing of the lung cancer cell lines demonstrated that multiple pathways are altered by bexarotene. For the first time, these studies demonstrate a new, clinically relevant aerosolized bexarotene formulation that exhibits preventive efficacy against the major subtypes of lung cancer. This approach could be a major advancement in lung cancer prevention for high risk populations, including former and present smokers.


Subject(s)
Adenocarcinoma of Lung/drug therapy , Aerosols/administration & dosage , Bexarotene/administration & dosage , Carcinoma, Squamous Cell/drug therapy , Adenocarcinoma of Lung/genetics , Adenocarcinoma of Lung/pathology , Administration, Oral , Animals , Anticarcinogenic Agents/administration & dosage , Anticarcinogenic Agents/adverse effects , Bexarotene/adverse effects , Carcinoma, Squamous Cell/genetics , Carcinoma, Squamous Cell/pathology , Disease Models, Animal , Drug Compounding , High-Throughput Nucleotide Sequencing , Humans , Hypercholesterolemia/chemically induced , Hypercholesterolemia/pathology , Hypercholesterolemia/prevention & control , Lung/drug effects , Lung/pathology , Lymphocytes, Tumor-Infiltrating/drug effects , Mice , Signal Transduction/drug effects
4.
Chemistry ; 21(44): 15570-4, 2015 Oct 26.
Article in English | MEDLINE | ID: mdl-26493879

ABSTRACT

An unusual 1D-to-3D transformation of a coordination polymer based on organic linkers containing highly polar push-pull π-conjugated side chains is reported. The coordination polymers are synthesized from zinc nitrate and an organic linker, namely, 2,5-bis{4-[1-(4-nitrophenyl)pyrrolidin-2-yl]butoxy}terephthalic acid, which possesses highly polar (4-nitrophenyl)pyrrolidine groups, with high dipole moments of about 7 D. The coordination polymers exhibit an unusual transformation from a soluble, solvent-stabilized 1D coordination polymer into an insoluble, metal-organic framework (MOF)-like 3D coordination polymer. The coordination polymer exhibits good film-forming ability, and the MOF-like films are insoluble in conventional organic solvents.

5.
Int J Syst Evol Microbiol ; 63(Pt 11): 4224-4229, 2013 Nov.
Article in English | MEDLINE | ID: mdl-23811136

ABSTRACT

A novel Gram-stain-negative, facultatively anaerobic, non-motile and short rod-shaped bacterium, strain KBL009(T), was isolated from the larval gut of Hermetia illucens. Strain KBL009(T) grew optimally at 37 °C, at pH 6.0 and with 1-2 % (w/v) NaCl. The 16S rRNA gene sequence of strain KBL009(T) showed 97.6 % similarity to that of Paenalcaligenes hominis CCUG 53761A(T) indicating its classification with the genus Paenalcaligenes. The major fatty acids were cyclo-C17 : 0, C16 : 0 and summed feature 2 (comprising C14 : 0 3-OH/iso-C16 : 1). The respiratory quinones were ubiquinone-8 (Q-8), predominating, and a minor amount of Q-7. The polar lipids were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, one unknown aminolipid and five unknown polar lipids. The polyamine pattern contained predominantly putrescine and relatively high amounts of spermidine. The betaproteobacterial-specific 2-hydroxyputrescine could only be detected in trace amounts. The G+C content of genomic DNA was 56.1 mol%. Results from DNA-DNA hybridization with P. hominis KCTC 23583(T) unambiguously demonstrated that strain KBL009(T) represents a novel species in the genus Paenalcaligenes. Based on phenotypic, genotypic and phylogenetic characterization, the novel species Paenalcaligenes hermetiae sp. nov. is proposed. The type strain is KBL009(T) ( = KACC 16840(T) = JCM 18423(T)). An emended description of the genus Paenalcaligenes is also provided.


Subject(s)
Alcaligenaceae/classification , Diptera/microbiology , Gastrointestinal Tract/microbiology , Phylogeny , Alcaligenaceae/genetics , Alcaligenaceae/isolation & purification , Animals , Bacterial Typing Techniques , Base Composition , DNA, Bacterial/genetics , Fatty Acids/chemistry , Larva/microbiology , Molecular Sequence Data , Nucleic Acid Hybridization , Phospholipids/genetics , Polyamines/chemistry , Putrescine/analogs & derivatives , RNA, Ribosomal, 16S/genetics , Republic of Korea , Sequence Analysis, DNA , Ubiquinone/chemistry
6.
NPJ Precis Oncol ; 7(1): 108, 2023 Oct 25.
Article in English | MEDLINE | ID: mdl-37880313

ABSTRACT

Triple-negative breast cancer (TNBC) is an aggressive subtype of breast cancer that has a poor prognosis. TOP2A is a key enzyme in DNA replication and is a therapeutic target for breast and other cancers. TOP2A-specific Th1-promoting epitopes with optimal binding affinity to MHC II were identified using a combined scoring system. The multi-peptide TOP2A vaccine elicited a robust immunologic response in immunized mice, as demonstrated by the significant production of Th1 cytokines from immunized animals' splenocytes stimulated in vitro with TOP2A peptides. Anti-tumor efficacy of the TOP2A vaccine was demonstrated in a syngeneic TNBC mouse model, in which pre-graft preventive vaccination was associated with significantly decreased tumor growth as compared to adjuvant control. In a genetically engineered mouse (GEM) model of TNBC, vaccinated animals demonstrated a significant reduction in tumor incidence and average tumor volume compared to adjuvant control. Finally, we examined TCR sequences in CD4 tumor Infiltrating lymphocytes (TIL) from vaccinated mice and found that the TIL contained TCR sequences specific to the three vaccine peptides. These data indicate that our newly developed multi-peptide TOP2A vaccine is highly immunogenic, elicits TILs with vaccine specific TCRs, and is highly effective in preventing and intercepting TNBC development and progression in vivo.

7.
Front Plant Sci ; 13: 905842, 2022.
Article in English | MEDLINE | ID: mdl-35958208

ABSTRACT

Ionomics, the study of the composition of mineral nutrients and trace elements in organisms that represent the inorganic component of cells and tissues, has been widely studied to explore to unravel the molecular mechanism regulating the elemental composition of plants. However, the genetic factors of rice subspecies in the interaction between arsenic and functional ions have not yet been explained. Here, the correlation between As and eight essential ions in a rice core collection was analyzed, taking into account growing condition and genetic factors. The results demonstrated that the correlation between As and essential ions was affected by genetic factors and growing condition, but it was confirmed that the genetic factor was slightly larger with the heritability for arsenic content at 53%. In particular, the cluster coefficient of japonica (0.428) was larger than that of indica (0.414) in the co-expression network analysis for 23 arsenic genes, and it was confirmed that the distance between genes involved in As induction and detoxification of japonica was far than that of indica. These findings provide evidence that japonica populations could accumulate more As than indica populations. In addition, the cis-eQTLs of AIR2 (arsenic-induced RING finger protein) were isolated through transcriptome-wide association studies, and it was confirmed that AIR2 expression levels of indica were lower than those of japonica. This was consistent with the functional haplotype results for the genome sequence of AIR2, and finally, eight rice varieties with low AIR2 expression and arsenic content were selected. In addition, As-related QTLs were identified on chromosomes 5 and 6 under flooded and intermittently flooded conditions through genome-scale profiling. Taken together, these results might assist in developing markers and breeding plans to reduce toxic element content and breeding high-quality rice varieties in future.

8.
Biomed Pharmacother ; 156: 113780, 2022 Dec.
Article in English | MEDLINE | ID: mdl-36228379

ABSTRACT

Influenza viruses cause respiratory infections in humans with high morbidity and mortality rates. Neuraminidase inhibitors such as oseltamivir and peramivir are the most commonly used drugs for influenza virus infections. However, the emergence of resistant viruses necessitates the urgent need to develop next-generation anti-influenza drugs. Soybean (Glycine max L. Merr.) is widely cultivated and used as food worldwide. In addition, soybean has long been used as a nutritional supplement and herbal medicine. However, the potential anti-influenza properties of the soybean cultivar "GL 2626/96″ (SG2626) are yet to be investigated. Herein, we determined whether the ethanolic extract of SG2626 (SG2626E) has anti-viral activity through performing SG2626E pre-, co-, and post-treatment assays, using the influenza green fluorescent protein (GFP)-tagged influenza A/PR/8/34 (A/PR/8/34-GFP) virus. SG2626E showed anti-influenza virus activity in pre- and co-treated cells in a dose-dependent manner, but not in post-treated cells. SG2626E imparted a considerable inhibitory effect on influenza A virus (IAV) infection through blocking viral attachment. SG2626E inhibited the activity of viral hemagglutinin, but not viral neuraminidase of the IAV. SG2626E inhibited IAV infection by reducing intracellular calcium levels in infected human lung epithelial A549 cells. Additionally, SG2626E reduced body weight loss, decreased mortality, and increased the survival rate through reducing viral replication in the lungs of IAV-infected mice. Overall, these results suggest that SG2626E inhibits IAV infection and is a potential novel anti-influenza agent.


Subject(s)
Influenza A Virus, H1N1 Subtype , Influenza A virus , Influenza, Human , Humans , Mice , Animals , Antiviral Agents/pharmacology , Neuraminidase , Glycine max , Influenza, Human/drug therapy , Virus Replication , Plant Extracts/pharmacology , Plant Extracts/therapeutic use
9.
J Adv Res ; 42: 303-314, 2022 12.
Article in English | MEDLINE | ID: mdl-36513420

ABSTRACT

INTRODUCTION: Fragrance is an important economic and quality trait in rice. The trait is controlled by the recessive gene betaine aldehyde dehydrogenase 2 (BADH2) via the production of 2-acetyl-1-pyrroline (2AP). OBJECTIVES: Variation in BADH2 was evaluated at the population, genetic, transcriptional, and metabolic levels to obtain insights into fragrance regulation in rice. METHODS: Whole-genome resequencing of the Korean World Rice Collection of 475 rice accessions, including 421 breeding lines and 54 wild accessions, was performed. Transcriptome analyses of a subset of 279 accessions, proteome analyses of 64 accessions, and volatile profiling of 421 breeding lines were also performed. RESULTS: We identified over 3.1 million high-quality single nucleotide polymorphisms (SNPs) in Korean rice collection. Most SNPs were present in intergenic regions (79%), and 190,148 SNPs (6%) were located in the coding sequence, of which 53% were nonsynonymous. In total, 38 haplotypes were identified in the BADH2 coding region, including four novel haplotypes (one in cultivated and three in wild accessions). Tajima's D values suggested that BADH2 was under balancing selection in japonica rice. Furthermore, we identified 316 expression quantitative trait loci (eQTL), including 185 cis-eQTLs and 131 trans-eQTLs, involved in BADH2 regulation. A protein quantitative trait loci (pQTL) analysis revealed the presence of trans-pQTLs; 13 pQTLs were mapped 1 Mbp from the BADH2 region. Based on variable importance in projection (VIP) scores, 15 volatile compounds, including 2AP, discriminated haplotypes and were potential biomarkers for rice fragrance. CONCLUSION: We generated a catalog of haplotypes based on a resequencing analysis of a large number of rice accessions. eQTLs and pQTLs associated with BADH2 gene expression and protein accumulation are likely involved in the regulation of 2AP variation in fragrant rice. These data improve our understanding of fragrance and provide valuable information for rice breeding.


Subject(s)
Oryza , Perfume , Betaine-Aldehyde Dehydrogenase/genetics , Betaine-Aldehyde Dehydrogenase/metabolism , Oryza/genetics , Oryza/metabolism , Odorants , Multiomics , Plant Proteins/genetics , Plant Proteins/metabolism , Plant Breeding , Perfume/metabolism
10.
Curr Microbiol ; 62(5): 1390-9, 2011 May.
Article in English | MEDLINE | ID: mdl-21267722

ABSTRACT

As it is known that food waste can be reduced by the larvae of Hermetia illucens (Black soldier fly, BSF), the scientific and commercial value of BSF larvae has increased recently. We hypothesised that the ability of catabolic degradation by BSF larvae might be due to intestinal microorganisms. Herein, we analysed the bacterial communities in the gut of BSF larvae by pyrosequencing of extracting intestinal metagenomic DNA from larvae that had been fed three different diets. The 16S rRNA sequencing results produced 9737, 9723 and 5985 PCR products from larval samples fed food waste, cooked rice and calf forage, respectively. A BLAST search using the EzTaxon program showed that the bacterial community in the gut of larvae fed three different diets was mainly composed of the four phyla with dissimilar proportions. Although the composition of the bacterial communities depended on the different nutrient sources, the identified bacterial strains in the gut of BSF larvae represented unique bacterial species that were unlike the intestinal microflora of other insects. Thus, our study analysed the structure of the bacterial communities in the gut of BSF larvae after three different feedings and assessed the application of particular bacteria for the efficient degradation of organic compounds.


Subject(s)
Bacteria/isolation & purification , Diptera/microbiology , Larva/microbiology , Refuse Disposal , Waste Products/analysis , Animals , Bacteria/classification , Bacteria/genetics , Bacteria/metabolism , Diptera/growth & development , Diptera/physiology , Gastrointestinal Tract/microbiology , Larva/growth & development , Larva/physiology , Molecular Sequence Data , Phylogeny
11.
Rice (N Y) ; 12(1): 84, 2019 Nov 21.
Article in English | MEDLINE | ID: mdl-31754895

ABSTRACT

BACKGROUND: Rice is a major food resource for Asian countries including Korea. However, most Asian countries are facing food safety problems due to cropland contamination by heavy metals. Thus, this study was conducted to investigate genetic factors affecting the expression of cadmium (Cd) gene, and to confirm differences in Cd translocation among cultivars because the current molecular understanding of Cd uptake-transport mechanisms remains insufficient. Associations between genotypes and gene expression level of Cd-related genes such as NRAMP, MTP, and HMA gene families in the rice core collection were analyzed at the genomic level. RESULTS: Os01g0956700, Os05g0128400 and Os11g0485200 showed strong associations between expression level and genotype in the rice core collection, the regulatory factors that associated with these genes in cis and trans were founded. The association between the expression level and genotype of the candidate gene (Os01g0611300: metal tolerance protein) predicted to affect Cd content in rice by a previous genome-wide association study (GWAS) was also analyzed. Furthermore, as a result of the phylogeny and haplotype analyses of the candidate gene, high-Cd tolerance cultivars were selected. The correlations between Cd and other inorganic components (Mg, Mn, Fe, Cu and Zn) in the roots, stems, leaves and unpolished grain of selected rice cultivars were analyzed. CONCLUSION: Therefore, these results may be useful for understanding the uptake-transport mechanisms of Cd and other inorganic components via molecular genetics and may help rice breeders develop new low-Cd cultivars in the near future.

12.
J Korean Neurosurg Soc ; 61(1): 89-96, 2018 Jan.
Article in English | MEDLINE | ID: mdl-29354240

ABSTRACT

OBJECTIVE: Morphometric data for the lumbar posterior longitudinal ligament (PLL) was investigated to identify whether there is a difference in the morphometry of the PLL of the lumbar spine at each level with respect to the pattern of intervertebral disc displacement. METHODS: In 14 formalin-fixed adult cadavers (12 males and 2 females), from L1 to L5, the authors measured the width and height of the PLL and compared them with other landmarks such as the disc and the pedicle. RESULTS: Horizontally, at the upper margin of the disc, the central portion of the superficial PLL covered 17.8-36.9% of the disc width and the fan-like portion of the PLL covered 63.9-76.7% of the disc width. At the level of the median portion of the disc, the PLL covered 69.1-74.5% of the disc width. Vertically, at the level of the medial margin of the pedicle, the fan-like portion of the PLL covered 23.5-29.9% of the disc height. In general, a significant difference in length was not found in the right-left and male-female comparisons. CONCLUSION: This study presents the morphometric data on the pattern of intervertebral disc displacement and helps to improve the knowledge of the surgical anatomy of the lumbar PLL.

13.
Oncotarget ; 8(42): 72447-72456, 2017 Sep 22.
Article in English | MEDLINE | ID: mdl-29069801

ABSTRACT

Gefitinib showed response in phase II clinical trials and with better clinical response in lung cancer with activating mutations in the tyrosine kinase domain of the EGFR. Questions of toxicity and potential dosing regimens impede the use in a prevention setting. This study will provide scientific evidence for the utility of testing and comparing weekly and daily dosing regimens in clinical trials. We employed the adenocarcinoma (AD) and squamous cell carcinoma (SCC) models to compare the efficacy of Gefitinib in daily or weekly dosing regimens. We also assessed the effectiveness of Gefitinib in altering growth of the H3255 xenograft. Bioluminescent imaging (BLI) and tumor size was evaluated. Relative expression of phospho-EGFR, phospho-ERK and phospho-AKT in the xenograft were evaluated by Western Blot analysis. In the lung AD model, Gefitinib showed significant inhibition of tumor load when treated with weekly or weekly intermittent dosing regimens in AJ/p53 val135/wt mice whereas a daily dosing regimen did not decrease the tumor load significantly. In the H3255-Luciferase xenograft model, weekly treatment demonstrated better inhibition than daily treatment. The weekly dosing regimen exhibited greater inhibition of phospho-EGFR, phospho-ERK and phospho-AKT than the daily dosing regimen, which may be correlated with the antitumor effects of the different dosing regimens. Weekly dosing with Gefitinib had similar or better efficacy than the daily dosing regimen in pre-clinical models of NSCLC. The data provide scientific evidences for the utility of testing and comparing weekly and intermittent dosing regimens in clinical trials.

14.
J Control Release ; 90(3): 303-11, 2003 Jul 31.
Article in English | MEDLINE | ID: mdl-12880697

ABSTRACT

Thermosensitive cyclotriphosphazenes bearing alkoxy poly(ethylene glycol) and amino acid esters as side groups could be functionalized to chelate the antitumor (diamine)platinum(II) moiety through the dicarboxylate group of the amino acid substituent on the cyclic phosphazene ring. Surprisingly, like the precursor cyclotriphosphazenes, these (diamine)platinum(II)-cyclotriphosphazene conjugates were also found to exhibit variable lower critical solution temperatures (LCST) in the wide range of 12 to 92 degrees C. Furthermore, the present conjugates have shown outstanding in vitro and in vivo antitumor activities due to controlled release of the antitumor (diamine)platinum(II) moiety with hydrolytic degradation of the phosphazene ring. A few of these conjugates have shown LCSTs below body temperature, and it has been shown from a model animal experiment that the conjugates with a LCST below body temperature may be applied to local drug delivery by direct intratumoral injection.


Subject(s)
Antineoplastic Agents/chemical synthesis , Organophosphorus Compounds/chemical synthesis , Organoplatinum Compounds/chemical synthesis , Animals , Antineoplastic Agents/chemistry , Antineoplastic Agents/pharmacology , Body Temperature , Cell Line, Tumor , Chemistry, Pharmaceutical , Drug Carriers , Drug Compounding , Drug Screening Assays, Antitumor , Magnetic Resonance Spectroscopy , Mice , Organophosphorus Compounds/chemistry , Organophosphorus Compounds/pharmacology , Organoplatinum Compounds/chemistry , Organoplatinum Compounds/pharmacology , Structure-Activity Relationship , Temperature
15.
J Korean Neurosurg Soc ; 50(2): 130-3, 2011 Aug.
Article in English | MEDLINE | ID: mdl-22053234

ABSTRACT

Spinal epidural lipomatosis (SEL) is an overgrowth of the normally encapsulated adipose tissue in the epidural space around the spinal cord in the thoracic and lumbar spine causing compression of the neural components. Idiopathic SEL in non-obese patients is exceptional. Idiopathic SEL can result in thoracic myelopathy and lumbar radiculopathy. A thoracic radiculopathy due to idiopathic SEL has not been reported yet. We report a case of idiopathic SEL with intractable chest pain and paresthesia. We suggest that idiopathic SEL should be considered as a cause of chest pain.

16.
J Korean Neurosurg Soc ; 50(1): 30-5, 2011 Jul.
Article in English | MEDLINE | ID: mdl-21892401

ABSTRACT

OBJECTIVE: Morphometric data for the sympathetic ganglia (SG) of the upper thoracic spine was investigated to identify the exact location of the SG in order to reduce normal tissue injury in the thoracic cavity during thoracoscopic sympathectomy. METHODS: In 46 specimens from 23 formalin-fixed adult cadavers, the authors measured the shortest distance from the medial margin of the T1, T2 and T3 SG to the most prominent point and medial margin of the corresponding rib heads, and to the lateral margin of the longus colli muscle. In addition, the distance between the most prominent point of the rib head and the lateral margin of longus colli muscle and the width of each SG were measured. RESULTS: The shortest distance from the medial margin of the SG to the prominent point of corresponding rib head was on average 1.9 mm on T1, 4.2 mm, and 4.1 mm on T2, T3. The distance from the medial margin of the SG to the medial margin of the corresponding rib head was 4.2 mm on T1, 5.9 mm, and 6.3 mm on T2, T3. The mean distance from the medial margin of the SG to the lateral margin of the longus colli muscle was 6.7 mm on T1, 8.8 mm, 9.9 and mm on T2, T3. The mean distance between the prominent point of the rib head and the lateral margin of the longus colli muscle was 4.8 mm on T1, 4.6 mm, and 5.9 mm on T2, T3. The mean width of SG was 6.1 mm on T1, 4.1 mm, and 3.1 mm on T2, T3. CONCLUSION: We present morphometric data to assist in surgical planning and the localization of the upper thoracic SG during thoracoscopic sympathectomy.

17.
Langmuir ; 24(13): 6785-95, 2008 Jun 01.
Article in English | MEDLINE | ID: mdl-18517227

ABSTRACT

Antimicrobial surfaces were prepared using the "grafting onto" technique. Well-defined block copolymers containing poly(2-(dimethylamino)ethyl methacrylate) and poly(3-(trimethoxysilyl)propyl methacrylate) segments (PDMAEMA/PTMSPMA) and corresponding random copolymers were prepared via atom transfer radical polymerization (ATRP), followed by covalent attachment to a glass surface through reaction of the trimethoxysilyl groups with surface silanol groups. The density of quaternary ammonium (QA) groups available to bind small molecules in solution increased with polymer solution concentration and immobilization time. For the PDMAEMA 97- b-PTMSPMA xdiblock copolymers with a fixed length of PDMAEMA segment (degree of polymerization (DP) = 97) and varied lengths of PTMSPMA segments, maximal available surface charge was observed when the ratio of DP PDMAEMA to DP PTMSPMA was 5:1. The tertiary amino groups in immobilized PDMAEMA segments were reacted with ethyl bromide to form QA groups. Alternatively, block copolymers with prequaternized PDMAEMA segments were attached to surfaces. Biocidal activity of the surfaces with grafted polymers versus Escherichia coli ( E. coli) increased with the density of available QA units on the surface. The number of bacteria killed by the surface increased from 0.06 x 10(5) units/cm2 to 0.6 x 10(5) units/cm2, when the density of surface QA increased from 1.0 x 10(14) unit/cm2 to 6.0 x 10(14) unit/cm2. The killing efficiency of QA on all surfaces was similar with approximately 1 x 10(10) units of QA needed to kill one bacterium. The AFM analysis indicated that grafting onto the surface resulted in small patches of highly concentrated polymer. These patches appear to increase the killing efficiency as compared to surfaces prepared by grafting onto with the same average polymer density but with a uniform distribution.


Subject(s)
Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/pharmacology , Glass/chemistry , Quaternary Ammonium Compounds/chemistry , Escherichia coli/cytology , Escherichia coli/drug effects , Magnetic Resonance Spectroscopy , Microbial Viability/drug effects , Microscopy, Atomic Force , Molecular Structure , Polymers/chemistry , Solutions/chemistry , Surface Properties , Time Factors
18.
Nano Lett ; 5(11): 2202-6, 2005 Nov.
Article in English | MEDLINE | ID: mdl-16277453

ABSTRACT

We describe here the first method for dispersion of individual self-assembled diacetylene nanotubes on surfaces. Complete polymerization by UV exposure was achieved as demonstrated by nanotubes that were resistant to aggressive organic solvents and temperatures well above the melting point of the monomer. The polymerized tubes displayed reversible thermochromic and mechanochromic properties.

19.
Biomacromolecules ; 4(5): 1386-93, 2003.
Article in English | MEDLINE | ID: mdl-12959610

ABSTRACT

Amphiphilic random, gradient, and block copolymers of 2-(dimethylamino)ethyl methacrylate (DMAEMA) and n-butyl methacrylate (BMA) were synthesized by atom transfer radical polymerization (ATRP) in water/2-propanol mixtures using a methoxy-poly(ethylene glycol) (MPEG) (M(n) = 2000) macroinitiator. Kinetic studies indicate that the copolymerization is well controlled with molecular weights increasing linearly with conversion. Copolymers with molecular weights up to M(n) = 34000 and low polydispersities (M(w)/M(n) = 1.11-1.47) were prepared. The reactivity ratios were calculated for the copolymerizations catalyzed by CuBr/bpy, (r(DMAEMA) = 1.07, r(BMA) = 1.24). The thermosensitivity and aggregation properties of the random, gradient, and block copolymers significantly depended on the architecture of the copolymers. The lower critical solution temperature of MPEG-b-PDMAEMA(84) was 38 degrees C (5 wt % in water).


Subject(s)
Methacrylates/chemical synthesis , Nylons/chemical synthesis , Kinetics , Magnetic Resonance Spectroscopy , Molecular Weight , Solutions , Surface-Active Agents , Water
20.
J Am Chem Soc ; 126(41): 13400-5, 2004 Oct 20.
Article in English | MEDLINE | ID: mdl-15479096

ABSTRACT

We describe the facile two-step synthesis of nanotubes that form pure, well-defined, nanostructured materials. We have synthesized a secondary amine HBr salt as the headgroup of a single-chain diacetylenic lipid. This molecule can form a number of different self-assembled nanostructures in aqueous or organic solvents. In water, this lipid forms a monodisperse preparation of nanotubes at high yields. Partially dissolving a preparation of nanotubes dried from aqueous solution results in a remarkably organized structure that resembles a nanocarpet. Details of the nanotube structure were investigated by scanning electron microscopy, transmission electron microscopy, and small-angle X-ray spectroscopy. The aqueous nanotubes have a cross-sectional diameter of 89 nm. The walls of the tubes are an exquisitely uniform 27 nm thick and are shown to consist of five lipid bilayers with a repeat spacing of 57.8 A. The chemical structure of the material shows no chiral centers, but suspensions of the nanotubes in an aqueous medium show an unexpected circular dichroism signal. The versatility of this new material as a platform for nanostructure design and synthesis is enhanced by its biocidal activity. This antimicrobial activity along with the regularity the nanostructures will enhance the development of a range of applications from biosensors to artificial retinas.


Subject(s)
Acetylene/analogs & derivatives , Acetylene/chemical synthesis , Anti-Bacterial Agents/chemistry , Ethylenediamines/chemical synthesis , Nanostructures/chemistry , Acetylene/chemistry , Acetylene/pharmacology , Anti-Bacterial Agents/chemical synthesis , Anti-Bacterial Agents/pharmacology , Escherichia coli K12/drug effects , Ethylenediamines/chemistry , Ethylenediamines/pharmacology , Lipids/chemical synthesis , Lipids/chemistry , Lipids/pharmacology , Microbial Sensitivity Tests , Microscopy, Electron, Transmission , Models, Molecular , Nanotechnology/methods
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