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1.
Int J Obes (Lond) ; 42(4): 926-929, 2018 04.
Article in English | MEDLINE | ID: mdl-29437160

ABSTRACT

Severe obesity (body mass index Ć¢Ā©Ā¾35 kg m-2) and type 2 diabetes (T2D) are potent and additive risk factors for non-alcoholic fatty liver disease (NAFLD), including non-alcoholic steatohepatitis (NASH). Scant available evidence indicates that black relative to white patients with severe obesity are less susceptible to NAFLD, but it is unclear if T2D abolishes this apparent racial disparity. Therefore, we compared biopsy-proven NAFLD and its progression between black (n=71) and white (n=155) patients with severe obesity stratified by presence or absence of T2D. Although prevalence of T2D was similar between races (37%, P>0.9), whites were significantly more likely than blacks to have NAFLD, NASH and advanced fibrosis (defined as bridging fibrosis and/or cirrhosis). Importantly, T2D was associated with increased odds of NAFLD, NASH and advanced fibrosis (defined as bridging fibrosis or cirrhosis) in whites only (P<0.05). In turn, a higher proportion of blacks than whites with T2D were free of NAFLD (58 versus 22%, P<0.01). These preliminary findings question translation of the powerful interconnection between T2D and NAFLD in whites with severe obesity to blacks and point to an important role of race in the pathophysiology and treatment of these diseases.


Subject(s)
Black or African American/statistics & numerical data , Diabetes Mellitus, Type 2/epidemiology , Non-alcoholic Fatty Liver Disease/epidemiology , Obesity, Morbid/epidemiology , White People/statistics & numerical data , Adult , Cohort Studies , Diabetes Mellitus, Type 2/complications , Female , Humans , Male , Middle Aged , Non-alcoholic Fatty Liver Disease/complications , Obesity, Morbid/complications
2.
Am J Transplant ; 16(3): 794-807, 2016 Mar.
Article in English | MEDLINE | ID: mdl-26663737

ABSTRACT

The utilization of normothermic machine perfusion (NMP) may be an effective strategy to resuscitate livers from donation after circulatory death (DCD). There is no consensus regarding the efficacy of different perfusates on graft and bile duct viability. The aim of this study was to compare, in an NMP porcine DCD model, the preservation potential of three different perfusates. Twenty porcine livers with 60 min of warm ischemia were separated into four preservation groups: cold storage (CS), NMP with Steen solution (Steen; XVIVO Perfusion Inc., Denver, CO), Steen plus red blood cells (RBCs), or whole blood (WB). All livers were preserved for 10 h and reperfused to simulate transplantation for 24 h. During preservation, the NMP with Steen group presented the highest hepatocellular injury. At reperfusion, the CS group had the lowest bile production and the worst hepatocellular injury compared with all other groups, followed by NMP with Steen; the Steen plus RBC and WB groups presented the best functional and hepatocellular injury outcomes, with WB livers showing lower aspartate aminotransferase release and a trend toward better results for most parameters. Based on our results, a perfusate that contains an oxygen carrier is most effective in a model of NMP porcine DCD livers compared with Steen solution. Specifically, WB-perfused livers showed a trend toward better outcomes compared with Steen plus RBCs.


Subject(s)
Death, Sudden, Cardiac , Liver/physiology , Organ Preservation/methods , Tissue Donors , Tissue and Organ Procurement/methods , Animals , Hemodynamics , Liver Transplantation , Oxygen Consumption , Perfusion , Regeneration , Swine , Warm Ischemia
3.
Mol Psychiatry ; 17(11): 1116-29, 2012 Nov.
Article in English | MEDLINE | ID: mdl-21876539

ABSTRACT

Coffee consumption is a model for addictive behavior. We performed a meta-analysis of genome-wide association studies (GWASs) on coffee intake from 8 Caucasian cohorts (N=18 176) and sought replication of our top findings in a further 7929 individuals. We also performed a gene expression analysis treating different cell lines with caffeine. Genome-wide significant association was observed for two single-nucleotide polymorphisms (SNPs) in the 15q24 region. The two SNPs rs2470893 and rs2472297 (P-values=1.6 Ɨ 10(-11) and 2.7 Ɨ 10(-11)), which were also in strong linkage disequilibrium (r(2)=0.7) with each other, lie in the 23-kb long commonly shared 5' flanking region between CYP1A1 and CYP1A2 genes. CYP1A1 was found to be downregulated in lymphoblastoid cell lines treated with caffeine. CYP1A1 is known to metabolize polycyclic aromatic hydrocarbons, which are important constituents of coffee, whereas CYP1A2 is involved in the primary metabolism of caffeine. Significant evidence of association was also detected at rs382140 (P-value=3.9 Ɨ 10(-09)) near NRCAM-a gene implicated in vulnerability to addiction, and at another independent hit rs6495122 (P-value=7.1 Ɨ 10(-09))-an SNP associated with blood pressure-in the 15q24 region near the gene ULK3, in the meta-analysis of discovery and replication cohorts. Our results from GWASs and expression analysis also strongly implicate CAB39L in coffee drinking. Pathway analysis of differentially expressed genes revealed significantly enriched ubiquitin proteasome (P-value=2.2 Ɨ 10(-05)) and Parkinson's disease pathways (P-value=3.6 Ɨ 10(-05)).


Subject(s)
Cell Adhesion Molecules/genetics , Coffee/genetics , Cytochrome P-450 CYP1A1/genetics , Cytochrome P-450 CYP1A2/genetics , Drinking/genetics , Genome-Wide Association Study/methods , Antigens, Neoplasm/genetics , Apoptosis Regulatory Proteins/genetics , Caffeine/pharmacology , Cell Line , Female , Gene Expression/drug effects , Gene Expression Profiling/methods , Genetic Predisposition to Disease/genetics , Humans , Male , Parkinson Disease/genetics , Polymorphism, Single Nucleotide , Protein Serine-Threonine Kinases/genetics , White People/genetics
4.
Br J Dermatol ; 168(4): 864-6, 2013 Apr.
Article in English | MEDLINE | ID: mdl-23106574

ABSTRACT

BACKGROUND: Phenotypically diverse autoimmune conditions share common genetic susceptibility loci and underlying molecular pathways. OBJECTIVES: By systematically searching for single nucleotide polymorphisms (SNPs) associated with another autoimmune disease, rheumatoid arthritis (RA), we aimed to elucidate novel genetic markers of psoriasis. METHODS: We investigated 18 SNPs, previously confirmed as being associated with RA, in a U.K. cohort of 623 patients with early-onset psoriasis (presenting before age 40 years), comparing them with 2662 control subjects. RESULTS: Our findings confirm the association of early-onset psoriasis with REL (rs13031237, P=0Ā·0027). The minor allele of REL had opposing effects upon susceptibility to disease in patients with psoriasis and RA. CONCLUSION: Similar exploration of additional autoimmune loci and fine mapping of such regions may provide further insight into the genetics and molecular pathophysiology of psoriasis.


Subject(s)
Arthritis, Rheumatoid/genetics , Genes, rel/genetics , Polymorphism, Single Nucleotide/genetics , Psoriasis/genetics , Adult , Genetic Markers/genetics , Genetic Predisposition to Disease/genetics , Genotype , Humans , Risk Factors
5.
Am J Transplant ; 11(8): 1656-64, 2011 Aug.
Article in English | MEDLINE | ID: mdl-21672148

ABSTRACT

Rapamycin, an immunosuppressive drug used to prevent rejection after kidney transplantation, influences phosphate homeostasis, induces insulin resistance and has been shown to prolong lifespan in animal models. Because Klotho is an aging-suppressor gene controlling phosphate metabolism and insulin sensitivity, we investigated the influence of rapamycin on Klotho expression. A total of 100 kidney transplant recipients, 50 chronically treated with rapamycin and 50 with calcineurin inhibitors, were enrolled; 20 healthy subjects were employed as control. In the rapamycin group, serum phosphate was lower than in the CNI group with an increase in phosphate excretion and a reduction in its reabsorption. In addition, rapamycin increased insulin resistance as shown by HOMA index. Rapamycin treatment of an immortalized proximal tubular cell line induced the expression of Klotho, the phosphorylation of AKT in Ser473, downstream target of mTORC2 and the expression of RICTOR, mTORC2 main component. AKT inhibition reduced the rapamycin-induced expression of Klotho. In vivo rapamycin treatment induced higher degree of RICTOR and AKT Ser(473) expression directly correlating with long-term rapamycin exposure, FE(PO4) and HOMA index. In conclusion, our data would suggest that rapamycin may influence phosphate homeostasis and insulin resistance modulating Klotho expression through mTORC2 activation.


Subject(s)
Glucuronidase/metabolism , Hypophosphatemia/chemically induced , Immunosuppressive Agents/adverse effects , Insulin Resistance , Sirolimus/adverse effects , Transcription Factors/metabolism , Adult , Aged , Case-Control Studies , Female , Humans , Klotho Proteins , Male
6.
Am J Transplant ; 11(6): 1248-59, 2011 Jun.
Article in English | MEDLINE | ID: mdl-21645256

ABSTRACT

Acute rejection is still a common complication of kidney transplantation. IL-17 is known to be associated with allograft rejection but the cellular source and the role of this cytokine remains unclear. We investigated IL-17 graft expression in renal transplant recipients with acute antibody-mediated rejection (ABMR), acute T-cell-mediated rejection (TCMR), interstitial fibrosis and tubular atrophy (IFTA) and acute tubular damage due to calcineurin-inhibitor toxicity (CNI). In acute ABMR, tubular IL-17 protein expression was significantly increased compared to TCMR, where most of the IL-17Ć¢ĀĀŗ cells were CD4Ć¢ĀĀŗ graft infiltrating lymphocytes, IFTA and CNI control groups. The tubular expression of IL-17 in acute ABMR colocalized with JAK2 phosphorylation and peritubular capillaries C4d deposition. In addition, IL-17 tubular expression was directly and significantly correlated with the extension of C4d deposits. In cultured proximal tubular cells, C3a induced IL-17 gene and protein expression along with an increased in JAK2 phosphorylation. The inhibition of JAK2 abolished C3a-induced IL-17 expression. The use of steroids and monoclonal antibodies reduced IL-17 expression, JAK2 phosphorylation and C4d deposition in acute ABMR patients. Our data suggest that tubular cells represent a significant source of IL-17 in ABMR and this event might be mediated by the complement system activation featuring this condition.


Subject(s)
Graft Rejection/immunology , Interleukin-17/metabolism , Isoantibodies/immunology , Kidney Transplantation/immunology , Kidney Tubules/metabolism , Base Sequence , Blotting, Western , Cell Line, Transformed , DNA Primers , Enzyme-Linked Immunosorbent Assay , Humans , Immunohistochemistry , Kidney Tubules/pathology , Microscopy, Confocal , Polymerase Chain Reaction
7.
J Med Genet ; 46(7): 451-4, 2009 Jul.
Article in English | MEDLINE | ID: mdl-19359265

ABSTRACT

BACKGROUND: Telomere length is a predictor for a number of common age related diseases and is a heritable trait. METHODS AND RESULTS: To identify new loci associated with mean leukocyte telomere length we conducted a genome wide association study of 314,075 single nucleotide polymorphisms (SNPs) and validated the results in a second cohort (n for both cohorts combined = 2790). We identified two novel associated variants (rs2162440, p = 2.6 x 10(-6); and rs7235755, p = 5.5 x 10(-6)) on chromosome 18q12.2 in the same region as the VPS34/PIKC3C gene, which has been directly implicated in the pathway controlling telomere length variation in yeast. CONCLUSION: These results provide new insights into the pathways regulating telomere homeostasis in humans.


Subject(s)
Chromosomes, Human, Pair 18 , Genome-Wide Association Study/methods , Leukocytes/ultrastructure , Telomere/genetics , Twins , Cohort Studies , Data Interpretation, Statistical , Female , Genome, Human , Humans , Leukocytes/metabolism , Male , Polymorphism, Single Nucleotide , Reproducibility of Results , Sex Factors , Telomere/chemistry , Telomere/metabolism
8.
Diabetologia ; 52(12): 2578-84, 2009 Dec.
Article in English | MEDLINE | ID: mdl-19820914

ABSTRACT

AIMS/HYPOTHESIS: Evidence from candidate gene studies suggests that obesity may modify genetic susceptibility to type 2 diabetes and dyslipidaemia. On an aggregate level, gene-obesity interactions are expected to result in different heritability estimates at different obesity levels. However, this hypothesis has never been tested. METHOD: The present study included 2,180 British female twins. BMI was used as an index of general obesity. Outcome measures were insulin sensitivity (indexed by quantitative insulin-sensitivity check index [QUICKI]) and fasting plasma lipid profile. Structural equation modelling was used to test whether BMI interacted with latent genetic and environmental effects to impact on the outcome measures. RESULTS: Genetic influences on triacylglycerol increased with BMI (p < 0.001) whereas the unique environmental influence on QUICKI decreased with BMI (p < 0.001), resulting in a higher heritability estimate for both measures at higher BMI levels. This was further illustrated by stratified analysis in twin pairs concordant for normal weight and twin pairs concordant for overweight. Heritability was 19 percentage points higher for triacylglycerol (p < 0.001) and 31 percentage points higher for QUICKI (p < 0.01) among twins concordant for overweight than among twins concordant for normal weight. BMI had no moderator effect on the latent genetic and environmental factors for total cholesterol and HDL-cholesterol. CONCLUSIONS/INTERPRETATION: Our results suggest that the expression of genes influencing triacylglycerol and insulin sensitivity can vary as a function of obesity status. The substantial increases in the genetic contribution to the total variance in insulin sensitivity and triacylglycerols at higher BMIs may prove extremely valuable in the search for candidate genes.


Subject(s)
Body Mass Index , Insulin/physiology , Lipids/blood , Obesity/genetics , Obesity/physiopathology , Body Weight , Female , Humans , Insulin/pharmacology , Obesity/blood , Triglycerides/blood , Triglycerides/metabolism , United Kingdom
9.
Diabetologia ; 52(6): 1048-55, 2009 Jun.
Article in English | MEDLINE | ID: mdl-19288074

ABSTRACT

AIMS/HYPOTHESIS: Twin and family studies have shown the importance of genetic factors influencing fasting and 2 h glucose and insulin levels. However, the genetics of the physiological response to a glucose load has not been thoroughly investigated. METHODS: We studied 580 monozygotic and 1,937 dizygotic British female twins from the Twins UK Registry. The effects of genetic and environmental factors on fasting and 2 h glucose and insulin levels were estimated using univariate genetic modelling. Bivariate model fitting was used to investigate the glucose and insulin responses to a glucose load, i.e. an OGTT. RESULTS: The genetic effect on fasting and 2 h glucose and insulin levels ranged between 40% and 56% after adjustment for age and BMI. Exposure to a glucose load resulted in the emergence of novel genetic effects on 2 h glucose independent of the fasting level, accounting for about 55% of its heritability. For 2 h insulin, the effect of the same genes that already influenced fasting insulin was amplified by about 30%. CONCLUSIONS/INTERPRETATION: Exposure to a glucose challenge uncovers new genetic variance for glucose and amplifies the effects of genes that already influence the fasting insulin level. Finding the genes acting on 2 h glucose independently of fasting glucose may offer new aetiological insight into the risk of cardiovascular events and death from all causes.


Subject(s)
Environment , Models, Genetic , Models, Theoretical , Adult , Blood Glucose/genetics , Body Mass Index , Fasting , Female , Glucose Tolerance Test , Humans , Insulin/genetics , Middle Aged , Twins, Dizygotic , Twins, Monozygotic
10.
Cancer Res ; 45(11 Pt 1): 5219-24, 1985 Nov.
Article in English | MEDLINE | ID: mdl-4053002

ABSTRACT

A pancreatic acinar cell-mediated mutagenicity assay was developed as an in vitro model system to study the metabolism of N-nitrosobis(2-oxopropyl)amine (BOP) and N-nitroso(2-hydroxypropyl)(2-oxopropyl)amino (HPOP) into forms mutagenic for Chinese hamster V79 cells. Mutations at the hypoxanthine:guanine phosphoribosyltransferase locus and the Na/K ATPase locus were scored by resistance to 6-thioguanine and ouabain, respectively. The ability of both Syrian golden hamster and Fischer rat pancreatic acinar cells to convert BOP and HPOP to mutagens for V79 cells was investigated in order to examine the basis for species specificity. Acinar cells of both species were capable of activating BOP and HPOP to mutagens for V79 cells in a dose-dependent manner. In the 6-thioguanine resistance assay, rat acinar cells induced higher mutation frequencies than hamster acinar cells with both BOP and HPOP. In the ouabain resistance assay, both cell types induced equivalent levels of mutation with the respective nitrosamines. BOP was a considerably more potent mutagen than HPOP after activation by either cell type. This is consistent with the known in vivo specificity of BOP versus HPOP in the hamster pancreas and suggests that BOP may be activated to mutagenic metabolites by a pathway(s) independent from its enzymatic reduction to HPOP. The comparable abilities of rat and hamster acinar cells to convert BOP or HPOP to mutagenic forms imply that pancreatic metabolic activation alone cannot explain the difference in organotropism of BOP and HPOP in the two species.


Subject(s)
Carcinogens/metabolism , Mutagens/metabolism , Nitrosamines/metabolism , Pancreas/metabolism , Animals , Biotransformation , Cricetinae , Glucose/pharmacology , In Vitro Techniques , Male , Mesocricetus , Rats , Rats, Inbred F344 , Species Specificity , Thioguanine/pharmacology
11.
Cancer Res ; 47(18): 4776-81, 1987 Sep 15.
Article in English | MEDLINE | ID: mdl-3113724

ABSTRACT

The metabolic activation of the carcinogens N-nitrosobis(2-oxopropyl)amine (BOP) and N-nitroso(2-hydroxypropyl)(2-oxopropyl)amine (HPOP) by Fischer rat and Syrian hamster hepatocytes was investigated in order to determine the existence of species differences in the induction of cell mutation. The conversion of BOP and HPOP into forms mutagenic to V79 cells was studied by using the hepatocyte-mediated mutagenicity assay. Mutations at the hypoxanthine:guanine phosphoribosyltransferase locus and the Na-K-ATPase locus were scored by the induction of 6-thioguanine resistance (TGr) or ouabain resistance (Ouar), respectively. Hepatocytes of both species were capable of converting BOP and HPOP to mutagens for V79 cells in a dose-dependent manner. Metabolism of BOP by rat hepatocytes resulted in higher mutation frequencies than that by hamster hepatocytes. At a BOP concentration of 240 microM, rat hepatocyte metabolism yielded 90.7 TGr mutants and 19.5 Ouar mutants per 10(5) V79 cells. At the same concentration, hamster hepatocyte metabolism of BOP yielded 54.1 TGr mutants and 13.0 Ouar mutants per 10(5) V79 cells. These results did not correlate with the known carcinogenic potency of BOP in the hamster as compared to the rat. Hamster hepatocytes carried out the catabolism of BOP to CO2 at faster rates than rat hepatocytes; therefore, the species difference in mutagenic activation was not due to a defect in BOP uptake or metabolism by hamster hepatocytes. In contrast, metabolism of HPOP by hamster hepatocytes resulted in significantly higher mutation frequencies than that by rat hepatocytes. At an HPOP concentration of 240 microM, hamster hepatocyte metabolism yielded 83.5 TGr mutants per 10(5) V79 cells; rat hepatocyte metabolism yielded only 19.8 TGr mutants per 10(5) V79 cells. This species difference in mutagenic activation correlated well with the known potency of HPOP as a carcinogen for the hamster as compared to the rat. Since hamster pancreatic cells and subcellular fractions are known to have very limited capacity to perform the metabolic activation of HPOP, the results of this study imply that liver metabolism plays an important role in the conversion of HPOP to an agent(s) which subsequently affects the hamster pancreas. The mutagenic potency of BOP versus HPOP was compared after metabolism by hepatocytes from both species. Following their metabolism by hamster hepatocytes, the two compounds were nearly equivalent in mutagenic potency. After metabolism by rat hepatocytes, BOP was significantly more potent mutagen than HPOP.(ABSTRACT TRUNCATED AT 400 WORDS)


Subject(s)
Carcinogens/metabolism , Liver/metabolism , Mutagens/metabolism , Nitrosamines/metabolism , Animals , Biotransformation , Carbon Dioxide/metabolism , Cricetinae , In Vitro Techniques , Male , Mesocricetus , Mutation , Rats , Rats, Inbred F344 , Species Specificity , Time Factors
12.
Cancer Res ; 47(6): 1657-62, 1987 Mar 15.
Article in English | MEDLINE | ID: mdl-3545452

ABSTRACT

In this study we have investigated the effect of a single dose of tannic acid, administered s.c., on the nucleolar ultrastructure of hepatocytes transplanted into a syngeneic or xenogeneic host in order to evaluate the validity of our hepatocyte transplantation system as an in vivo alternative to the use of whole animals to test for species and strain differences to the effects of hepatotoxins. Within 4-6 h following tannic acid injection, rat hepatocytes transplanted into the anterior chamber of eye and inguinal fat pads of rat and athymic nude mouse, showed changes of nucleolar components, with separation of ribonucleoprotein containing granules into discrete dark zones. These dark areas were surrounded by light areas consisting of granular and fibrillar components of the nucleolus. These changes were identical to tannic acid-induced nucleolar alterations in the homotopic liver. Hamster and rat hepatocytes xenotransplanted into athymic nude mice also displayed prominent nucleolar alterations in response to tannic acid. The similarity and extent of nucleolar alterations observed in transplanted hepatocytes and the in situ homotopic liver cells attest to the usefulness of the hepatocyte transplantation system for the evaluation of species differences in biological response to toxic/carcinogenic effects of xenobiotics.


Subject(s)
Cell Nucleolus/drug effects , Hydrolyzable Tannins/toxicity , Liver/drug effects , Tannins/toxicity , Animals , Cell Nucleolus/ultrastructure , Cells, Cultured , Cricetinae , DNA/metabolism , Liver/ultrastructure , Liver Transplantation , Male , Mice , Rats , Rats, Inbred F344 , Transplantation, Heterologous , Transplantation, Isogeneic
13.
Med Hypotheses ; 97: 7-10, 2016 Dec.
Article in English | MEDLINE | ID: mdl-27876133

ABSTRACT

The role of telomere biology in cancer has been studied for a wide variety of different cancers but the association with telomere length has been controversial. This is because some cancers have been found to be associated with longer telomeres in circulating white cells whilst other cancer types are more common in individuals with shorter telomeres. Hence, there has been some skepticism as to whether telomere length may be helpful in estimating cancer risk. For melanoma, however, results have been fairly consistent showing that longer telomeres are associated with an increased risk. This link was first discovered because of a link between longer telomeres and a high number of naevi. In contrast, for cutaneous squamous cell carcinomas, the relationship is reversed with higher risk in individuals with shorter telomeres. Differences in skin phenotypes with the presence of high number of naevi versus photoageing with solar elastosis and solar keratoses have already been valuable for dermatologists as the former phenotype is associated with melanoma whilst the latter is more common in patients with squamous cell carcinoma of the skin. The hypothesis is that the differences in cutaneous phenotypes already observed by dermatologists for skin cancers may, in fact, be useful as well for cancer prediction in general as it may reflect underlying telomere biology. This manuscript will address the evidence for links between telomere biology, skin phenotypes and cancer risk.


Subject(s)
Skin Neoplasms/genetics , Skin Neoplasms/pathology , Skin/pathology , Telomere/ultrastructure , Carcinoma, Squamous Cell/genetics , Carcinoma, Squamous Cell/pathology , Genetic Predisposition to Disease , Genome-Wide Association Study , Humans , Keratosis/genetics , Keratosis/pathology , Melanoma/genetics , Melanoma/pathology , Mutation , Nevus/genetics , Nevus/pathology , Phenotype , Risk Factors , Skin Aging
14.
J Med Genet ; 40(4): 278-81, 2003 Apr.
Article in English | MEDLINE | ID: mdl-12676899

ABSTRACT

Hearing impairment (HI) is the most frequent sensory defect with wide genetic heterogeneity. Approximately 80% of genetic hearing loss is non-syndromic and 15-25% of exhibit autosomal dominant inheritance. We analysed an Italian three generation family in which non-syndromic hearing impairment is transmitted as an autosomal dominant trait. Onset of HI in all affected subjects occurred in the second decade of life, with subsequent gradual progression from moderate to profound loss. HI was bilateral and symmetrical, involving all frequencies. After exclusion of the known DFNA loci with markers from the Hereditary Hearing Loss Homepage (URL: http://dnalab-www.uia.ac.be/dnalab/hhh), a genome wide scan was carried out using 358 highly informative microsatellite markers. Significant linkage (Zmax=4.21, theta=0) was obtained with chromosome 2p12 markers. The results were confirmed by multipoint analysis (Zmax=4.51), using the location score method. Haplotype analysis defined a 9.6 cM disease gene interval on chromosome 2 without overlap with the other identified loci. Fine mapping and identification of candidate genes are in progress.


Subject(s)
Chromosomes, Human, Pair 2/genetics , Genes, Dominant/genetics , Hearing Loss, Sensorineural/genetics , Chromosome Mapping , Cytoskeletal Proteins/genetics , DNA/chemistry , DNA/genetics , DNA Mutational Analysis , Family Health , Female , Genetic Linkage , Genetic Predisposition to Disease/genetics , Genotype , Haplotypes , Hearing Loss, Sensorineural/pathology , Humans , Italy , Lod Score , Male , Microsatellite Repeats , Pedigree , alpha Catenin
15.
Hum Mutat ; 19(3): 308, 2002 Mar.
Article in English | MEDLINE | ID: mdl-11857750

ABSTRACT

Symphalangism (SYM or SYM1) is an autosomal dominant disorder characterized by multiple joint fusions. The disease is caused by mutations of the NOG gene, that maps to chromosome 17q22. So far, only six independent NOG mutations have been identified. We have analysed an Italian family in which father and son had bilateral symphalangism and detected a novel NOG mutation (P35S), originated in the father from a c.914C>T transition. A different mutation in the same codon (P35R) has been previously described. Comparison between different noggin gene hortologs shows that codon 35 is conserved. Therefore, this codon should play an important role in NOG gene function. This is the first mutation described for NOG after the initial report of NOG mutations being causative of SYM.


Subject(s)
Finger Joint/abnormalities , Mutation/genetics , Proline/genetics , Proteins/genetics , Serine/genetics , Toe Joint/abnormalities , Amino Acid Sequence/genetics , Amino Acid Substitution/genetics , Bone Morphogenetic Proteins/antagonists & inhibitors , Bone Morphogenetic Proteins/genetics , Carrier Proteins , Chromosomes, Human, Pair 17/genetics , Female , Haplotypes/genetics , Humans , Italy , Male , Molecular Sequence Data , Protein Structure, Secondary
16.
Hum Mutat ; 18(2): 109-19, 2001 Aug.
Article in English | MEDLINE | ID: mdl-11462235

ABSTRACT

X-linked Retinitis Pigmentosa (XLRP) shows a huge genetic heterogeneity with almost five distinct loci on the X chromosome. So far, only two XLRP genes have been identified, RPGR (or RP3) and RP2, being mutated in approximately 70% and 10% of the XLRP patients. Clinically there is no clearly significative difference between RP3 and RP2 phenotypes. In the attempt to assess the degree of involvement of the RP2 gene, we performed a complete mutation analysis in a cohort of patients and we identified five novel mutations in five different XLRP families. These mutations include three missense mutations, a splice site mutation, and a single base insertion, which, because of frameshift, anticipates a stop codon. Four mutations fall in RP2 exon 2 and one in exon 3. Evidence that such mutations are different from the 21 RP2 mutations described thus far suggests that a high mutation rate occurs at the RP2 locus, and that most mutations arise independently, without a founder effect. Our mutation analysis confirms the percentage of RP2 mutations detected so far in populations of different ethnic origin. In addition to novel mutations, we report here that a deeper sequence analysis of the RP2 product predicts, in addition to cofactor C homology domain, further putative functional domains, and that some novel mutations identify RP2 amino acid residues which are evolutionary conserved, hence possibly crucial to the RP2 function.


Subject(s)
Genetic Linkage/genetics , Mutation/genetics , Retinitis Pigmentosa/genetics , X Chromosome/genetics , Amino Acid Sequence , Base Sequence , Cohort Studies , Conserved Sequence/genetics , DNA Mutational Analysis , Ethnicity/genetics , Exons/genetics , Female , Genetic Heterogeneity , Humans , Male , Molecular Sequence Data , Pedigree , Phenotype , Polymorphism, Single-Stranded Conformational , Protein Structure, Tertiary , Sequence Alignment , Sequence Homology
17.
Eur J Hum Genet ; 11(6): 433-6, 2003 Jun.
Article in English | MEDLINE | ID: mdl-12774035

ABSTRACT

Chronic mucocutaneous candidiases (CMC) are a group of rare disorders where an altered immune response against Candida leads to persistent and/or recurrent infections of the skin, nails, and mucous membranes. We analysed a five-generation Italian family with an isolated form of CMC, affecting nails only, in the presence of low serum concentration of intercellular adhesion molecule I (ICAM-1). We excluded linkage to candidate regions on chromosomes 2p (CMC with thyroid disease), 21q22.3 (APECED), and 19q13 (ICAM-1). We then carried out a genome-wide scan and assigned the CMC locus to a 19 cM pericentromeric region on chromosome 11.


Subject(s)
Candidiasis, Chronic Mucocutaneous/genetics , Chromosome Mapping , Chromosomes, Human, Pair 11/genetics , Humans , Intercellular Adhesion Molecule-1/genetics , Italy , Pedigree
18.
Eur J Hum Genet ; 9(9): 667-71, 2001 Sep.
Article in English | MEDLINE | ID: mdl-11571554

ABSTRACT

Hearing impairment is the most common inherited human sensory defect. Nonsyndromic Hearing Impairment (NSHI) is the most genetically heterogeneous trait known. Over 70 loci have been mapped and a total of 19 genes have been identified. We report here a novel locus (DFNA 30) for autosomal dominant NSHI that we mapped to chromosome 15q25-26 in an Italian four-generation family. The haplotype analysis has identified a critical interval of 18 cM between markers D15S151 and D15S130. This region does not overlap with DFNB16 locus but partially coincides with the otosclerosis (OTS) locus. Localisation of the locus DFNA30 is a first step towards the identification of the gene.


Subject(s)
Chromosomes, Human, Pair 15/genetics , Genes, Dominant/genetics , Hearing Loss, Sensorineural/genetics , Chromosome Mapping , DNA/genetics , Family Health , Female , Genetic Linkage , Genotype , Humans , Lod Score , Male , Microsatellite Repeats , Pedigree
19.
Eur J Hum Genet ; 7(6): 687-94, 1999 Sep.
Article in English | MEDLINE | ID: mdl-10482958

ABSTRACT

The RPGR (retinitis pigmentosa GTPase regulator) gene has been shown to be mutated in 10-20% of patients with X-linked retinitis pigmentosa (XLRP), a severe form of inherited progressive retinal degeneration. A total of 29 different RPGR mutations have been identified in northern European and United States patients. We have performed mutation analysis of the RPGR gene in a cohort of 49 southern European males affected with XLRP. By multiplex SSCA and automatic direct sequencing of all 19 RPGR exons, seven different and novel mutations were identified in eight of the 49 families; these include three splice site mutations, two microdeletions, and two missense mutations. RNA analysis showed that the three splice site defects resulted in the generation of aberrant RPGR transcripts. Six of these mutations were detected in the conserved amino-terminal region of RPGR protein, containing tandem repeats homologous to the RCC1 protein, a guanine nucleotide-exchange factor for Ran-GTPase. Several exonic and intronic sequence variations were also detected. None of the RPGR mutations reported in other populations were identified in our series. Our results are consistent with the notions of heterogeneity and minority causation of XLRP by mutations in RPGR in Caucasian populations.


Subject(s)
Carrier Proteins/genetics , Eye Proteins , Genetic Linkage , Mutation , Retinitis Pigmentosa/genetics , X Chromosome , Base Sequence , DNA Mutational Analysis , Europe/epidemiology , Exons , Female , Gene Deletion , Genetic Variation , Humans , Introns , Male , Molecular Sequence Data , Mutation, Missense , Pedigree , Polymorphism, Genetic , RNA Splicing , Retinitis Pigmentosa/diagnosis , Reverse Transcriptase Polymerase Chain Reaction , United States/epidemiology
20.
FEBS Lett ; 250(2): 205-10, 1989 Jul 03.
Article in English | MEDLINE | ID: mdl-2753129

ABSTRACT

Using the normal adult rat hepatocytes, plated on rat tail collagen-coated dishes and fed a chemically defined medium, we demonstrate here that ciprofibrate at 0.1 mM concentration, increases significantly the mRNA levels of fatty acyl-CoA oxidase, enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase bifunctional protein, and thiolase (the three enzymes of the beta-oxidation system), and causes peroxisome proliferation. Increase in mRNA levels of these genes was evident within 1 h and was maximal 24 h after the addition of ciprofibrate. In hepatocytes with the basal levels of these enzymes were low and further declined with time. Concomitant treatment of hepatocytes with cycloheximide did not inhibit or superinduce the mRNA levels, indicating that this induction may represent a primary (direct) effect of this compound on the expression of these genes and does not apparently involve short-lived repressor protein(s).


Subject(s)
Clofibrate/analogs & derivatives , Clofibric Acid/analogs & derivatives , Hypolipidemic Agents/pharmacology , Liver/drug effects , Microbodies/metabolism , RNA, Messenger/metabolism , Animals , Blotting, Northern , Catalase/metabolism , Cells, Cultured , Clofibric Acid/pharmacology , Cycloheximide/pharmacology , Fibric Acids , Liver/enzymology , Liver/metabolism , Male , Oxidation-Reduction , Protein Biosynthesis , Proteins/antagonists & inhibitors , Rats , Rats, Inbred F344
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