Search | Virtual Health Library

1.

Dispersal patterns and influence of air travel during the global expansion of SARS-CoV-2 variants of concern.

Tegally, Houriiyah; Wilkinson, Eduan; Tsui, Joseph L-H; Moir, Monika; Martin, Darren; Brito, Anderson Fernandes; Giovanetti, Marta; Khan, Kamran; Huber, Carmen; Bogoch, Isaac I; San, James Emmanuel; Poongavanan, Jenicca; Xavier, Joicymara S; Candido, Darlan da S; Romero, Filipe; Baxter, Cheryl; Pybus, Oliver G; Lessells, Richard J; Faria, Nuno R; Kraemer, Moritz U G; de Oliveira, Tulio.

Cell ; 186(15): 3277-3290.e16, 2023 07 20.

Article in English | MEDLINE | ID: mdl-37413988

2.

The emergence and ongoing convergent evolution of the SARS-CoV-2 N501Y lineages.

Martin, Darren P; Weaver, Steven; Tegally, Houriiyah; San, James Emmanuel; Shank, Stephen D; Wilkinson, Eduan; Lucaci, Alexander G; Giandhari, Jennifer; Naidoo, Sureshnee; Pillay, Yeshnee; Singh, Lavanya; Lessells, Richard J; Gupta, Ravindra K; Wertheim, Joel O; Nekturenko, Anton; Murrell, Ben; Harkins, Gordon W; Lemey, Philippe; MacLean, Oscar A; Robertson, David L; de Oliveira, Tulio; Kosakovsky Pond, Sergei L.

Cell ; 184(20): 5189-5200.e7, 2021 09 30.

Article in English | MEDLINE | ID: mdl-34537136

3.

Altered TMPRSS2 usage by SARS-CoV-2 Omicron impacts infectivity and fusogenicity.

Meng, Bo; Abdullahi, Adam; Ferreira, Isabella A T M; Goonawardane, Niluka; Saito, Akatsuki; Kimura, Izumi; Yamasoba, Daichi; Gerber, Pehuén Pereyra; Fatihi, Saman; Rathore, Surabhi; Zepeda, Samantha K; Papa, Guido; Kemp, Steven A; Ikeda, Terumasa; Toyoda, Mako; Tan, Toong Seng; Kuramochi, Jin; Mitsunaga, Shigeki; Ueno, Takamasa; Shirakawa, Kotaro; Takaori-Kondo, Akifumi; Brevini, Teresa; Mallery, Donna L; Charles, Oscar J; Bowen, John E; Joshi, Anshu; Walls, Alexandra C; Jackson, Laurelle; Martin, Darren; Smith, Kenneth G C; Bradley, John; Briggs, John A G; Choi, Jinwook; Madissoon, Elo; Meyer, Kerstin B; Mlcochova, Petra; Ceron-Gutierrez, Lourdes; Doffinger, Rainer; Teichmann, Sarah A; Fisher, Andrew J; Pizzuto, Matteo S; de Marco, Anna; Corti, Davide; Hosmillo, Myra; Lee, Joo Hyeon; James, Leo C; Thukral, Lipi; Veesler, David; Sigal, Alex; Sampaziotis, Fotios.

Nature ; 603(7902): 706-714, 2022 03.

Article in English | MEDLINE | ID: mdl-35104837

4.

Detection of a SARS-CoV-2 variant of concern in South Africa.

Tegally, Houriiyah; Wilkinson, Eduan; Giovanetti, Marta; Iranzadeh, Arash; Fonseca, Vagner; Giandhari, Jennifer; Doolabh, Deelan; Pillay, Sureshnee; San, Emmanuel James; Msomi, Nokukhanya; Mlisana, Koleka; von Gottberg, Anne; Walaza, Sibongile; Allam, Mushal; Ismail, Arshad; Mohale, Thabo; Glass, Allison J; Engelbrecht, Susan; Van Zyl, Gert; Preiser, Wolfgang; Petruccione, Francesco; Sigal, Alex; Hardie, Diana; Marais, Gert; Hsiao, Nei-Yuan; Korsman, Stephen; Davies, Mary-Ann; Tyers, Lynn; Mudau, Innocent; York, Denis; Maslo, Caroline; Goedhals, Dominique; Abrahams, Shareef; Laguda-Akingba, Oluwakemi; Alisoltani-Dehkordi, Arghavan; Godzik, Adam; Wibmer, Constantinos Kurt; Sewell, Bryan Trevor; Lourenço, José; Alcantara, Luiz Carlos Junior; Kosakovsky Pond, Sergei L; Weaver, Steven; Martin, Darren; Lessells, Richard J; Bhiman, Jinal N; Williamson, Carolyn; de Oliveira, Tulio.

Nature ; 592(7854): 438-443, 2021 04.

Article in English | MEDLINE | ID: mdl-33690265

5.

Complete genome reconstruction of the global and European regional dispersal history of the lumpy skin disease virus.

Van Borm, Steven; Dellicour, Simon; Martin, Darren P; Lemey, Philippe; Agianniotaki, Eirini I; Chondrokouki, Eleni D; Vidanovic, Dejan; Vaskovic, Nikola; Petrovic, Tamas; Lazic, Sava; Koleci, Xhelil; Vodica, Ani; Djadjovski, Igor; Krstevski, Kiril; Vandenbussche, Frank; Haegeman, Andy; De Clercq, Kris; Mathijs, Elisabeth.

J Virol ; 97(11): e0139423, 2023 Nov 30.

Article in English | MEDLINE | ID: mdl-37905838

6.

Anti-COVID drug accelerates viral evolution.

Kosakovsky Pond, Sergei L; Martin, Darren.

Nature ; 623(7987): 486-487, 2023 Nov.

Article in English | MEDLINE | ID: mdl-37875683

7.

Selection Analysis Identifies Clusters of Unusual Mutational Changes in Omicron Lineage BA.1 That Likely Impact Spike Function.

Martin, Darren P; Lytras, Spyros; Lucaci, Alexander G; Maier, Wolfgang; Grüning, Björn; Shank, Stephen D; Weaver, Steven; MacLean, Oscar A; Orton, Richard J; Lemey, Philippe; Boni, Maciej F; Tegally, Houriiyah; Harkins, Gordon W; Scheepers, Cathrine; Bhiman, Jinal N; Everatt, Josie; Amoako, Daniel G; San, James Emmanuel; Giandhari, Jennifer; Sigal, Alex; Williamson, Carolyn; Hsiao, Nei-Yuan; von Gottberg, Anne; De Klerk, Arne; Shafer, Robert W; Robertson, David L; Wilkinson, Robert J; Sewell, B Trevor; Lessells, Richard; Nekrutenko, Anton; Greaney, Allison J; Starr, Tyler N; Bloom, Jesse D; Murrell, Ben; Wilkinson, Eduan; Gupta, Ravindra K; de Oliveira, Tulio; Kosakovsky Pond, Sergei L.

Mol Biol Evol ; 39(4)2022 04 11.

Article in English | MEDLINE | ID: mdl-35325204

8.

Establishment of five new genera in the family Geminiviridae: Citlodavirus, Maldovirus, Mulcrilevirus, Opunvirus, and Topilevirus.

Roumagnac, Philippe; Lett, Jean-Michel; Fiallo-Olivé, Elvira; Navas-Castillo, Jesús; Zerbini, F Murilo; Martin, Darren P; Varsani, Arvind.

Arch Virol ; 167(2): 695-710, 2022 Feb.

Article in English | MEDLINE | ID: mdl-34837111

9.

Virion-Associated Nucleic Acid-Based Metagenomics: A Decade of Advances in Molecular Characterization of Plant Viruses.

Moubset, Oumaima; François, Sarah; Maclot, François; Palanga, Essowè; Julian, Charlotte; Claude, Lisa; Fernandez, Emmanuel; Rott, Philippe; Daugrois, Jean-Heinrich; Antoine-Lorquin, Aymeric; Bernardo, Pauline; Blouin, Arnaud G; Temple, Coline; Kraberger, Simona; Fontenele, Rafaela S; Harkins, Gordon W; Ma, Yuxin; Marais, Armelle; Candresse, Thierry; Chéhida, Sélim Ben; Lefeuvre, Pierre; Lett, Jean-Michel; Varsani, Arvind; Massart, Sébastien; Ogliastro, Mylène; Martin, Darren P; Filloux, Denis; Roumagnac, Philippe.

Phytopathology ; 112(11): 2253-2272, 2022 Nov.

Article in English | MEDLINE | ID: mdl-35722889

10.

Evolutionary Analyses of Base-Pairing Interactions in DNA and RNA Secondary Structures.

Golden, Michael; Murrell, Benjamin; Martin, Darren; Pybus, Oliver G; Hein, Jotun.

Mol Biol Evol ; 37(2): 576-592, 2020 02 01.

Article in English | MEDLINE | ID: mdl-31665393

11.

ICTV Virus Taxonomy Profile: Geminiviridae 2021.

Fiallo-Olivé, Elvira; Lett, Jean-Michel; Martin, Darren P; Roumagnac, Philippe; Varsani, Arvind; Zerbini, F Murilo; Navas-Castillo, Jesús.

J Gen Virol ; 102(12)2021 12.

Article in English | MEDLINE | ID: mdl-34919512

12.

Novel circular DNA virus identified in Opuntia discolor (Cactaceae) that codes for proteins with similarity to those of geminiviruses.

Fontenele, Rafaela S; Köhler, Matias; Majure, Lucas C; Avalos-Calleros, Jesús A; Argüello-Astorga, Gerardo R; Font, Fabián; Vidal, Andreza H; Roumagnac, Philippe; Kraberger, Simona; Martin, Darren P; Lefeuvre, Pierre; Varsani, Arvind.

J Gen Virol ; 102(11)2021 11.

Article in English | MEDLINE | ID: mdl-34726588

13.

Compartmentalization and Clonal Amplification of HIV-1 in the Male Genital Tract Characterized Using Next-Generation Sequencing.

Kariuki, Samuel Mundia; Selhorst, Philippe; Anthony, Colin; Matten, David; Abrahams, Melissa-Rose; Martin, Darren P; Ariën, Kevin K; Rebe, Kevin; Williamson, Carolyn; Dorfman, Jeffrey R.

J Virol ; 94(12)2020 06 01.

Article in English | MEDLINE | ID: mdl-32269124

14.

A novel non-viral delivery method that enables efficient engineering of primary human T cells for ex vivo cell therapy applications.

Kavanagh, Heather; Dunne, Susan; Martin, Darren S; McFadden, Emily; Gallagher, Louise; Schwaber, Jessica; Leonard, Siobhán; O'Dea, Shirley.

Cytotherapy ; 23(9): 852-860, 2021 09.

Article in English | MEDLINE | ID: mdl-33941482

15.

How virulent are emerging maize-infecting mastreviruses?

Oyeniran, Kehinde A; Hartnady, Penelope; Claverie, Sohini; Lefeuvre, Pierre; Monjane, Adérito L; Donaldson, Lara; Lett, Jean-Michel; Varsani, Arvind; Martin, Darren P.

Arch Virol ; 166(3): 955-959, 2021 Mar.

Article in English | MEDLINE | ID: mdl-33502595

16.

Taxonomy update for the family Alphasatellitidae: new subfamily, genera, and species.

Varsani, Arvind; Martin, Darren P; Randles, John W; Vetten, H Josef; Thomas, John E; Fiallo-Olivé, Elvira; Navas-Castillo, Jesús; Lett, Jean-Michel; Zerbini, F Murilo; Roumagnac, Philippe; Gronenborn, Bruno.

Arch Virol ; 166(12): 3503-3511, 2021 Dec.

Article in English | MEDLINE | ID: mdl-34550466

17.

Pervasive tertiary structure in the dengue virus RNA genome.

Dethoff, Elizabeth A; Boerneke, Mark A; Gokhale, Nandan S; Muhire, Brejnev M; Martin, Darren P; Sacco, Matthew T; McFadden, Michael J; Weinstein, Jules B; Messer, William B; Horner, Stacy M; Weeks, Kevin M.

Proc Natl Acad Sci U S A ; 115(45): 11513-11518, 2018 11 06.

Article in English | MEDLINE | ID: mdl-30341219

18.

Heterogeneity of the rice microbial community of the Chinese centuries-old Honghe Hani rice terraces system.

Alonso, Pascal; Blondin, Laurence; Gladieux, Pierre; Mahé, Frédéric; Sanguin, Hervé; Ferdinand, Romain; Filloux, Denis; Desmarais, Eric; Cerqueira, Frédérique; Jin, Baihui; Huang, Huichuan; He, Xiahong; Morel, Jean-Benoit; Martin, Darren P; Roumagnac, Philippe; Vernière, Christian.

Environ Microbiol ; 22(8): 3429-3445, 2020 08.

Article in English | MEDLINE | ID: mdl-32510843

19.

Evidence for both Intermittent and Persistent Compartmentalization of HIV-1 in the Female Genital Tract.

Mabvakure, Batsirai M; Lambson, Bronwen E; Ramdayal, Kavisha; Masson, Lindi; Kitchin, Dale; Allam, Mushal; Abdool Karim, Salim; Williamson, Carolyn; Passmore, Jo-Ann; Martin, Darren P; Scheepers, Cathrine; Moore, Penny L; Harkins, Gordon W; Morris, Lynn.

J Virol ; 93(10)2019 05 15.

Article in English | MEDLINE | ID: mdl-30842323

20.

Sorghum mastrevirus-associated alphasatellites: new geminialphasatellites associated with an African streak mastrevirus infecting wild Poaceae plants on Reunion Island.

Claverie, Sohini; Varsani, Arvind; Hoareau, Murielle; Filloux, Denis; Roumagnac, Philippe; Martin, Darren P; Lefeuvre, Pierre; Lett, Jean-Michel.

Arch Virol ; 165(8): 1925-1928, 2020 Aug.

Article in English | MEDLINE | ID: mdl-32506147

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