Search | Virtual Health Library

1.

The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas.

Wang, Quanxin; Ding, Song-Lin; Li, Yang; Royall, Josh; Feng, David; Lesnar, Phil; Graddis, Nile; Naeemi, Maitham; Facer, Benjamin; Ho, Anh; Dolbeare, Tim; Blanchard, Brandon; Dee, Nick; Wakeman, Wayne; Hirokawa, Karla E; Szafer, Aaron; Sunkin, Susan M; Oh, Seung Wook; Bernard, Amy; Phillips, John W; Hawrylycz, Michael; Koch, Christof; Zeng, Hongkui; Harris, Julie A; Ng, Lydia.

Cell ; 181(4): 936-953.e20, 2020 05 14.

Article in English | MEDLINE | ID: mdl-32386544

2.

Genome-wide CRISPR-Cas9 screening reveals ubiquitous T cell cancer targeting via the monomorphic MHC class I-related protein MR1.

Crowther, Michael D; Dolton, Garry; Legut, Mateusz; Caillaud, Marine E; Lloyd, Angharad; Attaf, Meriem; Galloway, Sarah A E; Rius, Cristina; Farrell, Colin P; Szomolay, Barbara; Ager, Ann; Parker, Alan L; Fuller, Anna; Donia, Marco; McCluskey, James; Rossjohn, Jamie; Svane, Inge Marie; Phillips, John D; Sewell, Andrew K.

Nat Immunol ; 21(2): 178-185, 2020 02.

Article in English | MEDLINE | ID: mdl-31959982

3.

Author Correction: Genome-wide CRISPR-Cas9 screening reveals ubiquitous T cell cancer targeting via the monomorphic MHC class I-related protein MR1.

Crowther, Michael D; Dolton, Garry; Legut, Mateusz; Caillaud, Marine E; Lloyd, Angharad; Attaf, Meriem; Galloway, Sarah A E; Rius, Cristina; Farrell, Colin P; Szomolay, Barbara; Ager, Ann; Parker, Alan L; Fuller, Anna; Donia, Marco; McCluskey, James; Rossjohn, Jamie; Svane, Inge Marie; Phillips, John D; Sewell, Andrew K.

Nat Immunol ; 21(6): 695, 2020 06.

Article in English | MEDLINE | ID: mdl-32123375

4.

De novo variants in DENND5B cause a neurodevelopmental disorder.

Scala, Marcello; Tomati, Valeria; Ferla, Matteo; Lena, Mariateresa; Cohen, Julie S; Fatemi, Ali; Brokamp, Elly; Bican, Anna; Phillips, John A; Koziura, Mary E; Nicouleau, Michael; Rio, Marlene; Siquier, Karine; Boddaert, Nathalie; Musante, Ilaria; Tamburro, Serena; Baldassari, Simona; Iacomino, Michele; Scudieri, Paolo; Rosenfeld, Jill A; Bellus, Gary; Reed, Sara; Al Saif, Hind; Russo, Rossana Sanchez; Walsh, Matthew B; Cantagrel, Vincent; Crunk, Amy; Gustincich, Stefano; Ruggiero, Sarah M; Fitzgerald, Mark P; Helbig, Ingo; Striano, Pasquale; Severino, Mariasavina; Salpietro, Vincenzo; Pedemonte, Nicoletta; Zara, Federico.

Am J Hum Genet ; 111(3): 529-543, 2024 Mar 07.

Article in English | MEDLINE | ID: mdl-38387458

5.

Clustered de novo start-loss variants in GLUL result in a developmental and epileptic encephalopathy via stabilization of glutamine synthetase.

Jones, Amy G; Aquilino, Matilde; Tinker, Rory J; Duncan, Laura; Jenkins, Zandra; Carvill, Gemma L; DeWard, Stephanie J; Grange, Dorothy K; Hajianpour, M J; Halliday, Benjamin J; Holder-Espinasse, Muriel; Horvath, Judit; Maitz, Silvia; Nigro, Vincenzo; Morleo, Manuela; Paul, Victoria; Spencer, Careni; Esterhuizen, Alina I; Polster, Tilman; Spano, Alice; Gómez-Lozano, Inés; Kumar, Abhishek; Poke, Gemma; Phillips, John A; Underhill, Hunter R; Gimenez, Gregory; Namba, Takashi; Robertson, Stephen P.

Am J Hum Genet ; 111(4): 729-741, 2024 Apr 04.

Article in English | MEDLINE | ID: mdl-38579670

6.

The RNA-binding proteins hnRNP H and F regulate splicing of a MYC-dependent HRAS exon in prostate cancer cells.

Chen, Xinyuan; Yang, Harry Taegyun; Zhang, Beatrice; Phillips, John W; Cheng, Donghui; Rigo, Frank; Witte, Owen N; Xing, Yi; Black, Douglas L.

Proc Natl Acad Sci U S A ; 120(28): e2220190120, 2023 07 11.

Article in English | MEDLINE | ID: mdl-37399401

7.

IRIS: Discovery of cancer immunotherapy targets arising from pre-mRNA alternative splicing.

Pan, Yang; Phillips, John W; Zhang, Beatrice D; Noguchi, Miyako; Kutschera, Eric; McLaughlin, Jami; Nesterenko, Pavlo A; Mao, Zhiyuan; Bangayan, Nathanael J; Wang, Robert; Tran, Wendy; Yang, Harry T; Wang, Yuanyuan; Xu, Yang; Obusan, Matthew B; Cheng, Donghui; Lee, Alex H; Kadash-Edmondson, Kathryn E; Champhekar, Ameya; Puig-Saus, Cristina; Ribas, Antoni; Prins, Robert M; Seet, Christopher S; Crooks, Gay M; Witte, Owen N; Xing, Yi.

Proc Natl Acad Sci U S A ; 120(21): e2221116120, 2023 05 23.

Article in English | MEDLINE | ID: mdl-37192158

8.

Hierarchical organization of cortical and thalamic connectivity.

Harris, Julie A; Mihalas, Stefan; Hirokawa, Karla E; Whitesell, Jennifer D; Choi, Hannah; Bernard, Amy; Bohn, Phillip; Caldejon, Shiella; Casal, Linzy; Cho, Andrew; Feiner, Aaron; Feng, David; Gaudreault, Nathalie; Gerfen, Charles R; Graddis, Nile; Groblewski, Peter A; Henry, Alex M; Ho, Anh; Howard, Robert; Knox, Joseph E; Kuan, Leonard; Kuang, Xiuli; Lecoq, Jerome; Lesnar, Phil; Li, Yaoyao; Luviano, Jennifer; McConoughey, Stephen; Mortrud, Marty T; Naeemi, Maitham; Ng, Lydia; Oh, Seung Wook; Ouellette, Benjamin; Shen, Elise; Sorensen, Staci A; Wakeman, Wayne; Wang, Quanxin; Wang, Yun; Williford, Ali; Phillips, John W; Jones, Allan R; Koch, Christof; Zeng, Hongkui.

Nature ; 575(7781): 195-202, 2019 11.

Article in English | MEDLINE | ID: mdl-31666704

9.

MRP5 and MRP9 play a concerted role in male reproduction and mitochondrial function.

Chambers, Ian G; Kumar, Praveen; Lichtenberg, Jens; Wang, Pengcheng; Yu, Jianshi; Phillips, John D; Kane, Maureen A; Bodine, David; Hamza, Iqbal.

Proc Natl Acad Sci U S A ; 119(6)2022 02 08.

Article in English | MEDLINE | ID: mdl-35121660

10.

Physical and in silico immunopeptidomic profiling of a cancer antigen prostatic acid phosphatase reveals targets enabling TCR isolation.

Mao, Zhiyuan; Nesterenko, Pavlo A; McLaughlin, Jami; Deng, Weixian; Burton Sojo, Giselle; Cheng, Donghui; Noguchi, Miyako; Chour, William; DeLucia, Diana C; Finton, Kathryn A; Qin, Yu; Obusan, Matthew B; Tran, Wendy; Wang, Liang; Bangayan, Nathanael J; Ta, Lisa; Chen, Chia-Chun; Seet, Christopher S; Crooks, Gay M; Phillips, John W; Heath, James R; Strong, Roland K; Lee, John K; Wohlschlegel, James A; Witte, Owen N.

Proc Natl Acad Sci U S A ; 119(31): e2203410119, 2022 08 02.

Article in English | MEDLINE | ID: mdl-35878026

11.

Loss of the mitochondrial protein Abcb10 results in altered arginine metabolism in MEL and K562 cells and nutrient stress signaling through ATF4.

Miljkovic, Marisa; Seguin, Alexandra; Jia, Xuan; Cox, James E; Catrow, Jonathan Leon; Bergonia, Hector; Phillips, John D; Stephens, W Zac; Ward, Diane M.

J Biol Chem ; 299(7): 104877, 2023 07.

Article in English | MEDLINE | ID: mdl-37269954

12.

Dynamic Functional Connectivity in Pediatric Mild Traumatic Brain Injury.

van der Horn, Harm J; Ling, Josef M; Wick, Tracey V; Dodd, Andrew B; Robertson-Benta, Cidney R; McQuaid, Jessica R; Zotev, Vadim; Vakhtin, Andrei A; Ryman, Sephira G; Cabral, Joana; Phillips, John P; Campbell, Richard A; Sapien, Robert E; Mayer, Andrew R.

Neuroimage ; 285: 120470, 2024 Jan.

Article in English | MEDLINE | ID: mdl-38016527

13.

Identifying digenic disease genes via machine learning in the Undiagnosed Diseases Network.

Mukherjee, Souhrid; Cogan, Joy D; Newman, John H; Phillips, John A; Hamid, Rizwan; Meiler, Jens; Capra, John A.

Am J Hum Genet ; 108(10): 1946-1963, 2021 10 07.

Article in English | MEDLINE | ID: mdl-34529933

14.

Metal content and kinetic properties of yeast RNA lariat debranching enzyme Dbr1.

Clark, Nathaniel E; Katolik, Adam; Taggart, Allison J; Buerer, Luke; Holloway, Stephen P; Miller, Nathaniel; Phillips, John D; Farrell, Colin P; Damha, Masad J; Fairbrother, William G.

RNA ; 28(7): 927-936, 2022 07.

Article in English | MEDLINE | ID: mdl-35459748

15.

Data from electronic healthcare records expand our understanding of X-linked genetic diseases.

Tinker, Rory J; Bastarache, Lisa; Ezell, Kimberly; Neumann, Serena M; Furuta, Yutaka; Morgan, Karee A; Phillips, John A.

Am J Med Genet A ; 194(5): e63527, 2024 May.

Article in English | MEDLINE | ID: mdl-38229216

16.

Probable digenic inheritance of Diamond-Blackfan anemia.

Furuta, Yutaka; Tinker, Rory J; Gulsevin, Alican; Neumann, Serena M; Hamid, Rizwan; Cogan, Joy D; Rives, Lynette; Liu, Qi; Chen, Hua-Chang; Joos, Karen M; Phillips, John A.

Am J Med Genet A ; 194(3): e63454, 2024 Mar.

Article in English | MEDLINE | ID: mdl-37897121

17.

Undiagnosed Disease Network collaborative approach in diagnosing rare disease in a patient with a mosaic CACNA1D variant.

Ezell, Kimberly M; Tinker, Rory J; Furuta, Yutaka; Gulsevin, Alican; Bastarache, Lisa; Hamid, Rizwan; Cogan, Joy D; Rives, Lynette; Neumann, Serena; Corner, Brian; Kozuria, Mary; Phillips, John A.

Am J Med Genet A ; : e63597, 2024 Mar 21.

Article in English | MEDLINE | ID: mdl-38511854

18.

Shared and distinct transcriptomic cell types across neocortical areas.

Tasic, Bosiljka; Yao, Zizhen; Graybuck, Lucas T; Smith, Kimberly A; Nguyen, Thuc Nghi; Bertagnolli, Darren; Goldy, Jeff; Garren, Emma; Economo, Michael N; Viswanathan, Sarada; Penn, Osnat; Bakken, Trygve; Menon, Vilas; Miller, Jeremy; Fong, Olivia; Hirokawa, Karla E; Lathia, Kanan; Rimorin, Christine; Tieu, Michael; Larsen, Rachael; Casper, Tamara; Barkan, Eliza; Kroll, Matthew; Parry, Sheana; Shapovalova, Nadiya V; Hirschstein, Daniel; Pendergraft, Julie; Sullivan, Heather A; Kim, Tae Kyung; Szafer, Aaron; Dee, Nick; Groblewski, Peter; Wickersham, Ian; Cetin, Ali; Harris, Julie A; Levi, Boaz P; Sunkin, Susan M; Madisen, Linda; Daigle, Tanya L; Looger, Loren; Bernard, Amy; Phillips, John; Lein, Ed; Hawrylycz, Michael; Svoboda, Karel; Jones, Allan R; Koch, Christof; Zeng, Hongkui.

Nature ; 563(7729): 72-78, 2018 11.

Article in English | MEDLINE | ID: mdl-30382198

19.

The Genetic Landscape of Familial Pulmonary Fibrosis.

Liu, Qi; Zhou, Yuan; Cogan, Joy D; Mitchell, Daphne B; Sheng, Quanhu; Zhao, Shilin; Bai, Youhuang; Ciombor, Kristen K; Sabusap, Carleen M; Malabanan, M Merced; Markin, Cheryl R; Douglas, Katrina; Ding, Guixiao; Banovich, Nicholas E; Nickerson, Deborah A; Blue, Elizabeth E; Bamshad, Michael J; Brown, Kevin K; Schwartz, David A; Phillips, John A; Martinez-Barricarte, Ruben; Salisbury, Margaret L; Shyr, Yu; Loyd, James E; Kropski, Jonathan A; Blackwell, Timothy S.

Am J Respir Crit Care Med ; 207(10): 1345-1357, 2023 05 15.

Article in English | MEDLINE | ID: mdl-36622818

20.

Revision total knee replacement finances: a detailed cost-analysis of operative practice at a regional tertiary referral centre.

Alexiadis, Aris; Reynolds, Patrick; Al-Mouazzen, Louay; Toms, Andrew; Phillips, John; Waterson, Ben.

BMC Health Serv Res ; 24(1): 19, 2024 Jan 04.

Article in English | MEDLINE | ID: mdl-38178040

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