Search details
1.
A draft human pangenome reference.
Nature
; 617(7960): 312-324, 2023 05.
Article
in English
| MEDLINE | ID: mdl-37165242
2.
ODGI: understanding pangenome graphs.
Bioinformatics
; 38(13): 3319-3326, 2022 06 27.
Article
in English
| MEDLINE | ID: mdl-35552372
3.
The root-knot nematode effector MiMSP32 targets host 12-oxophytodienoate reductase 2 to regulate plant susceptibility.
New Phytol
; 237(6): 2360-2374, 2023 03.
Article
in English
| MEDLINE | ID: mdl-36457296
4.
A spectrum of free software tools for processing the VCF variant call format: vcflib, bio-vcf, cyvcf2, hts-nim and slivar.
PLoS Comput Biol
; 18(5): e1009123, 2022 05.
Article
in English
| MEDLINE | ID: mdl-35639788
5.
Highlights from the Era of Open Source Web-Based Tools.
J Neurosci
; 41(5): 927-936, 2021 02 03.
Article
in English
| MEDLINE | ID: mdl-33472826
6.
Tissue-specific mutation accumulation in human adult stem cells during life.
Nature
; 538(7624): 260-264, 2016 Oct 13.
Article
in English
| MEDLINE | ID: mdl-27698416
7.
AraQTL - workbench and archive for systems genetics in Arabidopsis thaliana.
Plant J
; 89(6): 1225-1235, 2017 Mar.
Article
in English
| MEDLINE | ID: mdl-27995664
8.
Transcriptional and Linkage Analyses Identify Loci that Mediate the Differential Macrophage Response to Inflammatory Stimuli and Infection.
PLoS Genet
; 11(10): e1005619, 2015 Oct.
Article
in English
| MEDLINE | ID: mdl-26510153
9.
Sambamba: fast processing of NGS alignment formats.
Bioinformatics
; 31(12): 2032-4, 2015 Jun 15.
Article
in English
| MEDLINE | ID: mdl-25697820
10.
Ten simple rules to run a successful BioHackathon.
PLoS Comput Biol
; 16(5): e1007808, 2020 05.
Article
in English
| MEDLINE | ID: mdl-32379758
11.
Community-driven development for computational biology at Sprints, Hackathons and Codefests.
BMC Bioinformatics
; 15 Suppl 14: S7, 2014.
Article
in English
| MEDLINE | ID: mdl-25472764
12.
Bioinformatics tools and database resources for systems genetics analysis in mice--a short review and an evaluation of future needs.
Brief Bioinform
; 13(2): 135-42, 2012 Mar.
Article
in English
| MEDLINE | ID: mdl-22396485
13.
Pangenome reconstruction in rats enhances genotype-phenotype mapping and novel variant discovery.
bioRxiv
; 2024 Apr 15.
Article
in English
| MEDLINE | ID: mdl-38260597
14.
A revamped rat reference genome improves the discovery of genetic diversity in laboratory rats.
Cell Genom
; 4(4): 100527, 2024 Apr 10.
Article
in English
| MEDLINE | ID: mdl-38537634
15.
Fast probabilistic file fingerprinting for big data.
BMC Genomics
; 14 Suppl 2: S8, 2013.
Article
in English
| MEDLINE | ID: mdl-23445565
16.
xQTL workbench: a scalable web environment for multi-level QTL analysis.
Bioinformatics
; 28(7): 1042-4, 2012 Apr 01.
Article
in English
| MEDLINE | ID: mdl-22308096
17.
Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics.
Bioinformatics
; 28(7): 1035-7, 2012 Apr 01.
Article
in English
| MEDLINE | ID: mdl-22332238
18.
Epigenetic analysis in a murine genetic model of Gulf War illness.
Front Toxicol
; 5: 1162749, 2023.
Article
in English
| MEDLINE | ID: mdl-37389175
19.
Pangenome graph layout by Path-Guided Stochastic Gradient Descent.
bioRxiv
; 2023 Oct 17.
Article
in English
| MEDLINE | ID: mdl-37790531
20.
Pangenome graphs in infectious disease: a comprehensive genetic variation analysis of Neisseria meningitidis leveraging Oxford Nanopore long reads.
Front Genet
; 14: 1225248, 2023.
Article
in English
| MEDLINE | ID: mdl-37636268