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1.
Clin Genet ; 94(5): 409-418, 2018 11.
Article in English | MEDLINE | ID: mdl-30028003

ABSTRACT

Hereditary distal renal tubular acidosis (dRTA) is a rare genetic disease that is caused by mutations in SLC4A1, ATP6V1B1, or ATP6V0A4. However, there are many families with hereditary dRTA in whom the disease-causing genes are unknown. Accordingly, we performed whole exome sequencing and genetic studies of the members of a family with autosomal recessive dRTA of an unknown genetic etiology. Here, we report compound heterozygous pathogenic variations in tryptophan-aspartate repeat domain 72 (WDR72) (c.1777A>G [p.R593G] and c.2522T>A [p.L841Q]) in three affected siblings of a family with dRTA. Both variants segregated with dRTA in the family and were not observed in normal control subjects. Homologous modeling and in silico mutagenesis indicated that R593G and L841Q alter the H-bond formations in the nearby residues, affecting the WDR72 protein structure. All these evidences indicate that the identified WDR72 variations were probably to have caused hereditary dRTA in the reported family. In addition, homozygous nonsense mutation (c.2686C>T [p.R896X]) was identified in another family, strongly supporting the causal role of WDR72 in dRTA. Based on our literature review, WDR72 mutations associated with dRTA have not been previously described. This is the first identification of pathogenic variations in WDR72 as a cause of hereditary dRTA.


Subject(s)
Acidosis, Renal Tubular/diagnosis , Acidosis, Renal Tubular/genetics , Genetic Association Studies , Genetic Predisposition to Disease , Mutation , Proteins/genetics , Adolescent , Adult , Amino Acid Sequence , Biomarkers , Case-Control Studies , Child , Computational Biology/methods , DNA Mutational Analysis , Female , Genetic Association Studies/methods , Genotype , Humans , Male , Models, Molecular , Pedigree , Phenotype , Protein Conformation , Proteins/chemistry , Exome Sequencing , Young Adult
2.
Lett Appl Microbiol ; 58(3): 270-7, 2014 Mar.
Article in English | MEDLINE | ID: mdl-24266517

ABSTRACT

UNLABELLED: Dengue virus (DENV) infection is an arthropod-borne disease with increasing prevalence worldwide. Attempts have been made to develop therapeutic molecules for treatment for DENV infection. However, most of potentially therapeutic DENV monoclonal antibody was originated from mouse, which could cause undesirable effects in human recipients. Thus, fully human antibody is preferable for therapeutic development. Human single-chain variable fragments (HuScFv) with inhibitory effect to DENV infection were generated in this study. HuScFv molecules were screened and selected from the human antibody phage display library by using purified recombinant DENV full-length envelope (FL-E) and its domain III (EDIII) proteins as target antigens for biopanning. HuScFv molecules were then tested for their bindings to DENV particles by indirect ELISA and immunofluorescent microscopy. EDIII-specific HuScFv exhibited neutralizing effect to DENV infection in Vero cells in a dose-dependent manner as determined by plaque formation and cell ELISA. Epitope mapping and molecular docking results concordantly revealed interaction of HuScFv to functional loop structure in EDIII of the DENV E protein. The neutralizing HuScFv molecule warrants further development as a therapeutic biomolecule for DENV infection. SIGNIFICANCE AND IMPACT OF THE STUDY: No approved vaccine and specific drug for dengue virus (DENV) infection are available; thus, their developments are urgently required. The human single-chain variable antibody fragments (HuScFv) specific to DENV envelope (E) protein are potential to be developed as therapeutic biomolecules. HuScFv that bound specifically to recombinant full-length DENV E (FL-E) and its domain III (EDIII) were generated and testified for its inhibitory effect in DENV infection. EDIII-specific HuScFv inhibited DENV infection in a dose-dependent manner and has potential to be further developed as a therapeutic biomolecule for DENV infection.


Subject(s)
Antibodies, Viral/immunology , Dengue Virus/immunology , Single-Chain Antibodies/immunology , Viral Envelope Proteins/immunology , Amino Acid Sequence , Animals , Antibodies, Viral/administration & dosage , Chlorocebus aethiops , Dengue/immunology , Dengue/prevention & control , Dengue/virology , Dengue Virus/genetics , Epitope Mapping , Humans , Immunization, Passive , Mice , Molecular Sequence Data , Protein Structure, Tertiary , Sequence Alignment , Single-Chain Antibodies/administration & dosage , Single-Chain Antibodies/genetics , Vero Cells , Viral Envelope Proteins/chemistry , Viral Envelope Proteins/genetics
3.
Eur J Haematol ; 65(4): 279-84, 2000 Oct.
Article in English | MEDLINE | ID: mdl-11073170

ABSTRACT

The molecular defects of the factor XIII A subunit gene were studied in a patient with factor XIII deficiency. Mutation analysis was performed on amplified DNA from each exon of this gene by single-strand conformation polymorphism (SSCP) and DNA sequencing techniques. A substitution of guanine by adenine at nucleotide 1258 in exon 10 of the coagulation factor XIII A subunit gene has been identified in the patient. The mutation results in the replacement of Gly420 by Ser in the core domain of the enzyme. Restriction enzyme analysis of amplified exon 10 DNA confirmed that the patient was homozygous for this mutation. A family study revealed that the mutation was inherited from both parents, who were first cousins. The potential effects of the mutation were predicted by molecular modeling of the amino acid substitution within the coordinates of the crystal structure. The substitution occurred within the core domain of the enzyme at a residue completely conserved among all known members of the transglutaminase family. The model of the mutant protein suggests that although the substitution of Gly420 by Ser causes only minor readjustment of the residues and does not appear to be particularly deleterious in terms of structure, the mutation is, however, likely to decrease the molecule's ability to undergo the conformational change that is thought to be required for full transglutaminase activity. Our data strongly support the previously published information about the functional significance of the residues surrounding, but not forming, the catalytic pocket in the A subunit of factor XIII.


Subject(s)
Factor XIII Deficiency/genetics , Factor XIII/chemistry , Mutation, Missense , Amino Acid Sequence , Binding Sites , Child, Preschool , DNA Mutational Analysis , Factor XIII/genetics , Family Health , Homozygote , Humans , Male , Models, Molecular , Molecular Sequence Data , Pakistan/ethnology , Pedigree , Protein Structure, Tertiary , Protein Subunits , Sequence Alignment , Structure-Activity Relationship , Thailand
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