Search | Virtual Health Library

1.

Deciphering the "m⁶A Code" via Antibody-Independent Quantitative Profiling.

Garcia-Campos, Miguel Angel; Edelheit, Sarit; Toth, Ursula; Safra, Modi; Shachar, Ran; Viukov, Sergey; Winkler, Roni; Nir, Ronit; Lasman, Lior; Brandis, Alexander; Hanna, Jacob H; Rossmanith, Walter; Schwartz, Schraga.

Cell ; 178(3): 731-747.e16, 2019 07 25.

Article in English | MEDLINE | ID: mdl-31257032

2.

No evidence for ac4C within human mRNA upon data reassessment.

Georgeson, Joseph; Schwartz, Schraga.

Mol Cell ; 84(8): 1601-1610.e2, 2024 Apr 18.

Article in English | MEDLINE | ID: mdl-38640895

3.

m⁶A modification controls the innate immune response to infection by targeting type I interferons.

Winkler, Roni; Gillis, Ella; Lasman, Lior; Safra, Modi; Geula, Shay; Soyris, Clara; Nachshon, Aharon; Tai-Schmiedel, Julie; Friedman, Nehemya; Le-Trilling, Vu Thuy Khanh; Trilling, Mirko; Mandelboim, Michal; Hanna, Jacob H; Schwartz, Schraga; Stern-Ginossar, Noam.

Nat Immunol ; 20(2): 173-182, 2019 02.

Article in English | MEDLINE | ID: mdl-30559377

4.

Publisher Correction: m6A modification controls the innate immune response to infection by targeting type I interferons.

Winkler, Roni; Gillis, Ella; Lasman, Lior; Safra, Modi; Geula, Shay; Soyris, Clara; Nachshon, Aharon; Tai-Schmiedel, Julie; Friedman, Nehemya; Le-Trilling, Vu Thuy Khanh; Trilling, Mirko; Mandelboim, Michal; Hanna, Jacob H; Schwartz, Schraga; Stern-Ginossar, Noam.

Nat Immunol ; 20(2): 243, 2019 02.

Article in English | MEDLINE | ID: mdl-30635652

5.

Exclusion of m6A from splice-site proximal regions by the exon junction complex dictates m6A topologies and mRNA stability.

Uzonyi, Anna; Dierks, David; Nir, Ronit; Kwon, Oh Sung; Toth, Ursula; Barbosa, Isabelle; Burel, Cindy; Brandis, Alexander; Rossmanith, Walter; Le Hir, Hervé; Slobodin, Boris; Schwartz, Schraga.

Mol Cell ; 83(2): 237-251.e7, 2023 Jan 19.

Article in English | MEDLINE | ID: mdl-36599352

6.

Transcriptome-wide mapping reveals widespread dynamic-regulated pseudouridylation of ncRNA and mRNA.

Schwartz, Schraga; Bernstein, Douglas A; Mumbach, Maxwell R; Jovanovic, Marko; Herbst, Rebecca H; León-Ricardo, Brian X; Engreitz, Jesse M; Guttman, Mitchell; Satija, Rahul; Lander, Eric S; Fink, Gerald; Regev, Aviv.

Cell ; 159(1): 148-162, 2014 Sep 25.

Article in English | MEDLINE | ID: mdl-25219674

7.

How many tRNAs are out there?

Wiener, David; Schwartz, Schraga.

Mol Cell ; 81(8): 1595-1597, 2021 04 15.

Article in English | MEDLINE | ID: mdl-33861948

8.

Deciphering the principles of the RNA editing code via large-scale systematic probing.

Uzonyi, Anna; Nir, Ronit; Shliefer, Ofir; Stern-Ginossar, Noam; Antebi, Yaron; Stelzer, Yonatan; Levanon, Erez Y; Schwartz, Schraga.

Mol Cell ; 81(11): 2374-2387.e3, 2021 06 03.

Article in English | MEDLINE | ID: mdl-33905683

9.

High-resolution mapping reveals a conserved, widespread, dynamic mRNA methylation program in yeast meiosis.

Schwartz, Schraga; Agarwala, Sudeep D; Mumbach, Maxwell R; Jovanovic, Marko; Mertins, Philipp; Shishkin, Alexander; Tabach, Yuval; Mikkelsen, Tarjei S; Satija, Rahul; Ruvkun, Gary; Carr, Steven A; Lander, Eric S; Fink, Gerald R; Regev, Aviv.

Cell ; 155(6): 1409-21, 2013 Dec 05.

Article in English | MEDLINE | ID: mdl-24269006

10.

Context-dependent functional compensation between Ythdf m⁶A reader proteins.

Lasman, Lior; Krupalnik, Vladislav; Viukov, Sergey; Mor, Nofar; Aguilera-Castrejon, Alejandro; Schneir, Dan; Bayerl, Jonathan; Mizrahi, Orel; Peles, Shani; Tawil, Shadi; Sathe, Shashank; Nachshon, Aharon; Shani, Tom; Zerbib, Mirie; Kilimnik, Itay; Aigner, Stefan; Shankar, Archana; Mueller, Jasmine R; Schwartz, Schraga; Stern-Ginossar, Noam; Yeo, Gene W; Geula, Shay; Novershtern, Noa; Hanna, Jacob H.

Genes Dev ; 34(19-20): 1373-1391, 2020 10 01.

Article in English | MEDLINE | ID: mdl-32943573

11.

Directing RNA-modifying machineries towards endogenous RNAs: opportunities and challenges.

Witzenberger, Monika; Schwartz, Schraga.

Trends Genet ; 40(4): 313-325, 2024 Apr.

Article in English | MEDLINE | ID: mdl-38350740

12.

The epitranscriptome beyond m⁶A.

Wiener, David; Schwartz, Schraga.

Nat Rev Genet ; 22(2): 119-131, 2021 02.

Article in English | MEDLINE | ID: mdl-33188361

13.

m6A is required for resolving progenitor identity during planarian stem cell differentiation.

Dagan, Yael; Yesharim, Yarden; Bonneau, Ashley R; Frankovits, Tamar; Schwartz, Schraga; Reddien, Peter W; Wurtzel, Omri.

EMBO J ; 41(21): e109895, 2022 11 02.

Article in English | MEDLINE | ID: mdl-35971838

14.

Dynamic RNA acetylation revealed by quantitative cross-evolutionary mapping.

Sas-Chen, Aldema; Thomas, Justin M; Matzov, Donna; Taoka, Masato; Nance, Kellie D; Nir, Ronit; Bryson, Keri M; Shachar, Ran; Liman, Geraldy L S; Burkhart, Brett W; Gamage, Supuni Thalalla; Nobe, Yuko; Briney, Chloe A; Levy, Michaella J; Fuchs, Ryan T; Robb, G Brett; Hartmann, Jesse; Sharma, Sunny; Lin, Qishan; Florens, Laurence; Washburn, Michael P; Isobe, Toshiaki; Santangelo, Thomas J; Shalev-Benami, Moran; Meier, Jordan L; Schwartz, Schraga.

Nature ; 583(7817): 638-643, 2020 07.

Article in English | MEDLINE | ID: mdl-32555463

15.

txtools: an R package facilitating analysis of RNA modifications, structures, and interactions.

Garcia-Campos, Miguel Angel; Schwartz, Schraga.

Nucleic Acids Res ; 52(8): e42, 2024 May 08.

Article in English | MEDLINE | ID: mdl-38512053

16.

Multiplexed profiling facilitates robust m6A quantification at site, gene and sample resolution.

Dierks, David; Garcia-Campos, Miguel Angel; Uzonyi, Anna; Safra, Modi; Edelheit, Sarit; Rossi, Alice; Sideri, Theodora; Varier, Radhika A; Brandis, Alexander; Stelzer, Yonatan; van Werven, Folkert; Scherz-Shouval, Ruth; Schwartz, Schraga.

Nat Methods ; 18(9): 1060-1067, 2021 09.

Article in English | MEDLINE | ID: mdl-34480159

17.

Antisense pairing and SNORD13 structure guide RNA cytidine acetylation.

Thalalla Gamage, Supuni; Bortolin-Cavaillé, Marie-Line; Link, Courtney; Bryson, Keri; Sas-Chen, Aldema; Schwartz, Schraga; Cavaillé, Jérôme; Meier, Jordan L.

RNA ; 28(12): 1582-1596, 2022 12.

Article in English | MEDLINE | ID: mdl-36127124

18.

A systematic dissection of determinants and consequences of snoRNA-guided pseudouridylation of human mRNA.

Nir, Ronit; Hoernes, Thomas Philipp; Muramatsu, Hiromi; Faserl, Klaus; Karikó, Katalin; Erlacher, Matthias David; Sas-Chen, Aldema; Schwartz, Schraga.

Nucleic Acids Res ; 50(9): 4900-4916, 2022 05 20.

Article in English | MEDLINE | ID: mdl-35536311

19.

Probing small ribosomal subunit RNA helix 45 acetylation across eukaryotic evolution.

Bortolin-Cavaillé, Marie-Line; Quillien, Aurélie; Thalalla Gamage, Supuni; Thomas, Justin M; Sas-Chen, Aldema; Sharma, Sunny; Plisson-Chastang, Célia; Vandel, Laurence; Blader, Patrick; Lafontaine, Denis L J; Schwartz, Schraga; Meier, Jordan L; Cavaillé, Jérôme.

Nucleic Acids Res ; 50(11): 6284-6299, 2022 06 24.

Article in English | MEDLINE | ID: mdl-35648437

20.

Comprehensive mapping of exon junction complex binding sites reveals universal EJC deposition in Drosophila.

Morillo, Lucía; Paternina, Toni; Alasseur, Quentin; Genovesio, Auguste; Schwartz, Schraga; Le Hir, Hervé.

BMC Biol ; 21(1): 246, 2023 11 07.

Article in English | MEDLINE | ID: mdl-37936138

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