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1.
Med Mycol ; 59(2): 126-138, 2021 Feb 04.
Article in English | MEDLINE | ID: mdl-32534456

ABSTRACT

Interlaboratory evaluations of Mucorales qPCR assays were developed to assess the reproducibility and performance of methods currently used. The participants comprised 12 laboratories from French university hospitals (nine of them participating in the Modimucor study) and 11 laboratories participating in the Fungal PCR Initiative. For panel 1, three sera were each spiked with DNA from three different species (Rhizomucor pusillus, Lichtheimia corymbifera, Rhizopus oryzae). For panel 2, six sera with three concentrations of R. pusillus and L. corymbifera (1, 10, and 100 genomes/ml) were prepared. Each panel included a blind negative-control serum. A form was distributed with each panel to collect results and required technical information, including DNA extraction method, sample volume used, DNA elution volume, qPCR method, qPCR template input volume, qPCR total reaction volume, qPCR platform, and qPCR reagents used. For panel 1, assessing 18 different protocols, qualitative results (positive or negative) were correct in 97% of cases (70/72). A very low interlaboratory variability in Cq values (SD = 1.89 cycles) were observed. For panel 2 assessing 26 different protocols, the detection rates were high (77-100%) for 5/6 of spiked serum. There was a significant association between the qPCR platform and performance. However, certain technical steps and optimal combinations of factors may also impact performance. The good reproducibility and performance demonstrated in this study support the use of Mucorales qPCR as part of the diagnostic strategy for mucormycosis.


Subject(s)
Clinical Laboratory Techniques/standards , DNA, Fungal/genetics , Molecular Diagnostic Techniques/standards , Mucorales/genetics , Mucormycosis/blood , Mucormycosis/diagnosis , Real-Time Polymerase Chain Reaction/standards , Clinical Laboratory Techniques/instrumentation , Clinical Laboratory Techniques/methods , France , Hospitals, University/statistics & numerical data , Humans , Observer Variation , Reproducibility of Results
2.
Indoor Air ; 28(2): 298-306, 2018 03.
Article in English | MEDLINE | ID: mdl-29082624

ABSTRACT

Azole-resistant Aspergillus fumigatus (ARAF) has been reported in patients with chronic obstructive pulmonary disease (COPD) but has not been specifically assessed so far. Here, we evaluated ARAF prevalence in azole-naïve COPD patients and their homes, and assessed whether CYP51A mutations were similar in clinical and environmental reservoirs. Sixty respiratory samples from 41 COPD patients with acute exacerbation and environmental samples from 36 of these patient's homes were prospectively collected. A. fumigatus was detected in respiratory samples from 11 of 41 patients (27%) and in 15 of 36 domiciles (42%). Cyp51A sequencing and selection on itraconazole medium of clinical (n = 68) and environmental (n = 48) isolates yielded ARAF detection in 1 of 11 A. fumigatus colonized patients with COPD (9%) and 2 of 15 A. fumigatus-positive patient's homes (13%). The clinical isolate had no CYP51A mutation. Two environmental isolates from two patients harbored TR34 /L98H mutation, and one had an H285Y mutation. Coexistence of different cyp51A genotypes and/or azole resistance profiles was detected in 3 of 8 respiratory and 2 of 10 environmental samples with more than one isolate, confirming the need for a systematic screening of all clinically relevant isolates. The high prevalence of ARAF in patients with COPD and their homes supports the need for further studies to assess the prevalence of azole resistance in patients with Aspergillus diseases in Northern France.


Subject(s)
Air Pollution, Indoor/analysis , Antifungal Agents/pharmacology , Aspergillus fumigatus/isolation & purification , Azoles/pharmacology , Pulmonary Disease, Chronic Obstructive/microbiology , Acute Disease , Aged , Aspergillus fumigatus/drug effects , Aspergillus fumigatus/genetics , Colony Count, Microbial , Cytochrome P-450 Enzyme System/drug effects , Cytochrome P-450 Enzyme System/isolation & purification , Disease Progression , Drug Resistance, Fungal/genetics , Female , Fungal Proteins/drug effects , Fungal Proteins/isolation & purification , Genotype , Housing , Humans , Male , Middle Aged , Prevalence , Prospective Studies
3.
Antimicrob Agents Chemother ; 60(8): 5088-91, 2016 08.
Article in English | MEDLINE | ID: mdl-27297480

ABSTRACT

In vitro susceptibility of 933 Candida isolates, from 16 French hospitals, to micafungin was determined using the Etest in each center. All isolates were then sent to a single center for determination of MICs by the EUCAST reference method. Overall essential agreement between the two tests was 98.5% at ±2 log2 dilutions and 90.2% at ±1 log2 dilutions. Categorical agreement was 98.2%. The Etest is a valuable alternative to EUCAST for the routine determination of micafungin MICs in medical mycology laboratories.


Subject(s)
Antifungal Agents/pharmacology , Candida/drug effects , Echinocandins/pharmacology , Lipopeptides/pharmacology , Candida/genetics , Drug Resistance, Fungal/genetics , Micafungin , Microbial Sensitivity Tests
4.
Eur J Clin Microbiol Infect Dis ; 35(1): 137-48, 2016 Jan.
Article in English | MEDLINE | ID: mdl-26610340

ABSTRACT

Cryptosporidiosis is an important though underreported public health concern. Molecular tools might be helpful in improving its diagnosis. In this study, ZR Fecal DNA MiniPrep™ Kit (ZR) and NucliSens® easyMAG® (EM) were compared using four Cryptosporidium-seeded feces and 29 Cryptosporidium-positive stools. Thereafter, ZR was selected for prospective evaluation of Cryptosporidium detection by 18S rDNA and LAXER quantitative PCR (qPCR) in 69 stools from 56 patients after Cryptosporidium detection by glycerin, modified Ziehl-Neelsen (ZN) and auramine-phenol (AP) stainings. The combination of any of the two extraction methods with 18S qPCR yielded adequate detection of Cryptosporidium in seeded stools, but the ZR kit showed the best performance. All 29 Cryptosporidium-positive samples were positive with 18S qPCR, after both ZR and EM extraction. However, false-negative results were found with LAXER qPCR or nested PCR. Cryptosporidiosis was diagnosed in 7/56 patients. All the microscopic methods enabled the initial diagnosis, but Cryptosporidium was detected in 12, 13, and 14 samples from these seven patients after glycerin, ZN, and AP staining respectively. Among these samples, 14 and 12 were positive with 18S and LAXER qPCR respectively. In two patients, Cryptosporidium DNA loads were found to be correlated with clinical evolution. Although little known, glycerin is a sensitive method for the initial detection of Cryptosporidium. When combined with 18S qPCR, ZR extraction, which had not been evaluated so far for Cryptosporidium, was an accurate tool for detecting Cryptosporidium and estimating the oocyst shedding in the course of infection.


Subject(s)
Cryptosporidiosis/diagnosis , Cryptosporidium/isolation & purification , Microscopy/methods , Molecular Diagnostic Techniques/methods , Polymerase Chain Reaction/methods , Adolescent , Adult , Child , DNA, Protozoan/genetics , DNA, Ribosomal/genetics , False Negative Reactions , Female , Humans , Male , RNA, Ribosomal, 18S/genetics , Staining and Labeling/methods
5.
J Hosp Infect ; 135: 4-10, 2023 May.
Article in English | MEDLINE | ID: mdl-36871872

ABSTRACT

BACKGROUND: Intestinal clearance of carbapenemase-producing Enterobacterales (CPE-IC) is a cornerstone to discontinue isolation precautions for CPE patients in hospitals. This study aimed to evaluate the time to spontaneous CPE-IC and identify its potential associated risk factors. METHODS: This retrospective cohort study was carried out between January 2018 and September 2020 on all patients in a 3200-bed teaching referral hospital with confirmed CPE intestinal carriage. CPE-IC was defined as at least three consecutive CPE-negative rectal swab cultures without a subsequent positive result. A survival analysis was performed to determine the median time to CPE-IC. A multivariate Cox model was implemented to explore the factors associated with CPE-IC. RESULTS: A total of 110 patients were positives for CPE, of whom 27 (24.5%) achieved CPE-IC. Median time to CPE-IC was 698 days. Univariate analysis showed that female sex (P=0.046), multiple CPE-species in index cultures (P=0.005), Escherichia coli or Klebsiella spp. (P=0.001 and P=0.028, respectively) were significantly associated with the time to CPE-IC. Multivariate analysis highlighted that identification of E. coli carbapenemase-producing or CPEs harbouring ESBL genes in index culture extended the median time to CPE-IC, respectively (adjusted hazard ratio (aHR) = 0.13 (95% confidence interval: 0.04-0.45]; P=0.001 and aHR = 0.34 (95% confidence interval: 0.12-0.90); P=0.031). CONCLUSION: Intestinal decolonization of CPE can take several months to years to occur. Carbapenemase-producing E. coli are likely to play a key role in delaying intestinal decolonization, probably through horizontal gene transfer between species. Therefore, discontinuation of isolation precautions in CPE-patients should be considered with caution.


Subject(s)
Enterobacteriaceae Infections , Escherichia coli , Humans , Female , Retrospective Studies , beta-Lactamases/genetics , Bacterial Proteins/genetics , Hospitals , Enterobacteriaceae Infections/epidemiology , Enterobacteriaceae Infections/drug therapy , Anti-Bacterial Agents/therapeutic use
6.
J Clin Microbiol ; 50(3): 762-5, 2012 Mar.
Article in English | MEDLINE | ID: mdl-22170901

ABSTRACT

Antibody detection is a key diagnostic tool for noninvasive aspergillosis (NIA) such as allergic bronchopulmonary aspergillosis and chronic pulmonary aspergillosis. Specific immunoprecipitin detection (IPD) is considered as the reference but lacks standardization and is time-consuming. To evaluate the performance of a new anti-Aspergillus fumigatus IgG enzyme immunoassay (EIA) kit using a recombinant A. fumigatus antigen (Bio-Rad), a retrospective study was performed on 551 sera collected from patients with a definite diagnosis of NIA (group 1; n = 64), bronchial Aspergillus colonization (group 2; n = 26), and probable aerial Aspergillus contamination (group 3; n = 44); from patients suspected of NIA with negative serological and mycological investigations (group 4; n = 49); and from a group of 222 patients not suspected of NIA (group 5). The EIA exhibited excellent reproducibility with coefficients of variation below 10%. Agreement with IPD was calculated between 62.5 and 84.4% according to the group of patients with Cohen's kappa coefficient at 0.6196 ± 0.077. Taking as reference a composite status including clinical, radiological, mycological, and serological data, sensitivity (group 1) and specificity (other groups) were calculated between 90.2 and 93.8% and 54.3 and 100%, respectively. Lower specificity was observed for patients with Aspergillus colonization. However, Yule Q coefficients estimating the correlation between EIA result and the definite diagnosis of NIA were calculated between 0.97 and 0.98. The method is a highly useful screening tool for the diagnosis of NIA, reducing the need for confirmatory IPD tests.


Subject(s)
Antibodies, Fungal/blood , Antigens, Fungal , Aspergillosis/diagnosis , Clinical Laboratory Techniques/methods , Mycology/methods , Humans , Immunoenzyme Techniques/methods , Immunoglobulin G/blood , Recombinant Proteins , Reproducibility of Results , Retrospective Studies , Sensitivity and Specificity
7.
Bull Soc Pathol Exot ; 105(4): 276-83, 2012 Oct.
Article in French | MEDLINE | ID: mdl-22886432

ABSTRACT

The impact of autoimmunity on malaria-infection evolution reported by various works has led us to compare reactive patterns of self-dependent systemic IgG from 54 patients aged less than 15 years old to those from 46 subjects older than 15 years. These subjects were divided into 34 Plasmodium falciparum asymptomatic carriers (ACs), 30 cases of uncomplicated malaria (UM), and 36 patients suffering from cerebral malaria (CM) living in the same endemic area. The reactivity of the plasma antibodies against human brain tissue extract was assessed by western blotting. Comparative analysis of reactive bands (linear discriminant analysis, LDA) revealed the existence of patterns that distinguish, among the more susceptible subjects aged less than 15 years old, the different clinical forms. In contrast, in less susceptible subjects aged more than 15 years old, the patterns are homogenous and do not allow the separation of these clinical forms. This self-reactive repertoire might be witnessed as an imprint of the clinical tolerance acquired during the years of living in endemic areas. The singularity of this profile under the age of 15 years might have a prognostic value.


Subject(s)
Aging/immunology , Autoantibodies/immunology , Immunoglobulin G/immunology , Malaria, Cerebral/immunology , Malaria, Falciparum/immunology , Adolescent , Adult , Aged , Aged, 80 and over , Antibody Specificity , Autoantibodies/blood , Autoantigens/immunology , Brain/immunology , Carrier State/epidemiology , Carrier State/immunology , Child , Child, Preschool , Cote d'Ivoire/epidemiology , Disease Progression , Disease Susceptibility , Endemic Diseases , Environmental Exposure , Female , Humans , Immune Tolerance , Immunoglobulin G/blood , Infant , Malaria, Cerebral/epidemiology , Malaria, Cerebral/etiology , Malaria, Falciparum/epidemiology , Male , Middle Aged , Nerve Tissue Proteins/immunology , Prognosis , Young Adult
8.
J Clin Pharm Ther ; 36(2): 152-60, 2011 Apr.
Article in English | MEDLINE | ID: mdl-21366643

ABSTRACT

WHAT IS KNOWN AND OBJECTIVE: Invasive fungal infections (IFI) are associated with high rates of morbidity and mortality, particularly in onco-haematology patients. We aimed to study the epidemiology of IFI in neutropenic patients and estimate the economic impact of treatment of those infections. METHODS: All patients hospitalized in onco-haematology, and treated with antifungal agents, in 2005 were investigated. Four features were studied: the diagnosis for each patient, the antifungal drugs used, the thoracic densitometry reports and the sero-mycological data. Infectious episodes were stratified according to the EORTC 2008 classification criteria (10). RESULTS AND DISCUSSION: Of the 1130 patients surveyed, 192 patients received systemic antifungal agents. Of these 46% had acute leukaemia, 29% bone-marrow allografts, 7% lymphoma and 18% other malignant haemopathies. Using the EORTC 2008 criteria (10), there were 8 proved IFI (3 aspergillosis, 3 candidosis and 2 other IFI), 17 probable IFI (11 aspergillosis, 6 candidosis) and 16 possible aspergillosis. The incidence of IFI was 2·1%. Eighty patients (41·7%) had received prophylaxis: 56 with fluconazole and 24 with voriconazole. Treatment was most often empirical (n = 127, 66·1%). Combination of two antifungals was used in 17 cases. The mean duration of prophylactic, empirical, proved/probable aspergillosis-directed, candidaemia-directed and combination treatment was 19, 19, 46, 32 and 27 days, respectively. The cost of antifungal treatment in 2005 reached almost 2,000,000 €, including 427,000 € for documented infections (proved and probable), 1,246,000 € for empirical treatment and 58,300 € for prophylaxis. WHAT IS NEW AND CONCLUSION: The incidence of IFI is low but the pharmacoeconomic impact is extremely high. Improved strategies are required to reduce the frequency and duration of empirical treatment without compromising beneficial outcome.


Subject(s)
Antifungal Agents/therapeutic use , Hematologic Neoplasms/complications , Mycoses/drug therapy , Mycoses/epidemiology , Adult , Antifungal Agents/economics , Child , Disease Progression , Humans , Mycoses/complications , Mycoses/microbiology , Neutropenia/complications , Prescription Drugs/therapeutic use , Retrospective Studies , Treatment Outcome
9.
J Mycol Med ; 30(3): 101002, 2020 Sep.
Article in English | MEDLINE | ID: mdl-32507472

ABSTRACT

INTRODUCTION: Rhino-orbital-aspergillosis (ROA) is a rare but serious disease in immunocompetent patients. Diagnosis is often delayed due to the absence of specific clinical symptoms. We describe the case of a patient who presented initially with ROA which spread progressively to the right ethmoid-sphenoid sinuses and then to the brain. OBSERVATION: A 61-year-old patient with a history of well-controlled diabetes presented with a sudden severe decrease in right visual acuity. Cerebral MRI showed the presence of an infiltrate in the right orbital apex extending to the homolateral cavernous sinus without any cerebral involvement. A diagnosis of right orbital myositis was made and corticosteroid therapy was started. His symptoms worsened progressively leading to quasi-blindness. A new MRI showed the development of right sphenoid-ethmoid osteolytic lesions. A fungal aetiology was suspected and tests for fungal biomarkers found a ß-(1-3)-D-glucan level of 99pg/ml but negative galactomannan. An ethmoid biopsy was performed for histological and mycological investigations, including the detection of Aspergillus DNA by qPCR. qPCR was positive and culture resulted in the isolation of multi-sensitive Aspergillus fumigatus. Treatment was initiated with voriconazole. Due to persistence of blindness and the appearance of a lesion extending to the right frontal lobe, surgical excision was performed followed by antifungal treatment for a total duration of 1year. The patient is currently stable, but has persistence of blindness in the right eye. CONCLUSION: Invasive ROA is a rare but serious disease in immunocompetent patients which should be evoked in the differential diagnosis of a tumour or vasculitis. Early diagnosis is essential for optimal management.


Subject(s)
Aspergillosis/diagnosis , Central Nervous System Fungal Infections/diagnosis , Eye Infections, Fungal/microbiology , Immunocompetence , Invasive Fungal Infections/diagnosis , Rhinitis/microbiology , Antifungal Agents/therapeutic use , Aspergillosis/drug therapy , Aspergillosis/microbiology , Aspergillus fumigatus/isolation & purification , Blindness/diagnosis , Blindness/microbiology , Central Nervous System Fungal Infections/complications , Central Nervous System Fungal Infections/drug therapy , Central Nervous System Fungal Infections/microbiology , Diabetes Complications/drug therapy , Diabetes Complications/microbiology , Eye Infections, Fungal/complications , Eye Infections, Fungal/diagnosis , Eye Infections, Fungal/drug therapy , Humans , Invasive Fungal Infections/drug therapy , Invasive Fungal Infections/microbiology , Male , Middle Aged , Neuroaspergillosis/complications , Neuroaspergillosis/diagnosis , Neuroaspergillosis/drug therapy , Neuroaspergillosis/microbiology , Orbital Diseases/diagnosis , Orbital Diseases/drug therapy , Orbital Diseases/microbiology , Rhinitis/complications , Rhinitis/diagnosis , Rhinitis/drug therapy , Voriconazole/therapeutic use
10.
J Mycol Med ; 30(2): 100970, 2020 Jun.
Article in English | MEDLINE | ID: mdl-32334948

ABSTRACT

A survey of mycology laboratories for antifungal susceptibility testing (AFST) was undertaken in France in 2018, to better understand the difference in practices between the participating centers and to identify the difficulties they may encounter as well as eventual gaps with published standards and guidelines. The survey captured information from 45 mycology laboratories in France on how they perform AFST (number of strains tested, preferred method, technical and quality aspects, interpretation of the MIC values, reading and interpretation difficulties). Results indicated that 86% of respondents used Etest as AFST method, with a combination of one to seven antifungal agents tested. Most of the participating laboratories used similar technical parameters to perform their AFST method and a large majority used, as recommended, internal and external quality assessments. Almost all the participating mycology laboratories (98%) reported difficulties to interpret the MIC values, especially when no clinical breakpoints are available. The survey highlighted that the current AFST practices in France need homogenization, particularly for MIC reading and interpretation.


Subject(s)
Antifungal Agents/therapeutic use , Laboratories , Microbial Sensitivity Tests , Mycology , Professional Practice/statistics & numerical data , Disk Diffusion Antimicrobial Tests/methods , Disk Diffusion Antimicrobial Tests/standards , Disk Diffusion Antimicrobial Tests/statistics & numerical data , Drug Resistance, Fungal , France , History, 21st Century , Humans , Laboratories/standards , Laboratories/statistics & numerical data , Laboratory Proficiency Testing/methods , Laboratory Proficiency Testing/statistics & numerical data , Microbial Sensitivity Tests/methods , Microbial Sensitivity Tests/standards , Microbial Sensitivity Tests/statistics & numerical data , Mycology/history , Mycology/methods , Mycology/standards , Mycology/statistics & numerical data , Professional Practice/standards , Quality Control , Surveys and Questionnaires
11.
Med Mal Infect ; 36(2): 118-21, 2006 Feb.
Article in French | MEDLINE | ID: mdl-16458464

ABSTRACT

We report a pulmonary mucormycosis due to Absidia corymbifera. It occurred in a leukemic patient treated for a probable aspergillosis regressing after voriconazole treatment. The patient responded to surgery and a combination of liposomal amphotericin B and itraconazole. He was alive and well after 7-months of follow up.


Subject(s)
Aspergillosis/complications , Respiratory Tract Infections/diagnosis , Zygomycosis/diagnosis , Adult , Amphotericin B/therapeutic use , Antifungal Agents/therapeutic use , Drug Therapy, Combination , Humans , Itraconazole/therapeutic use , Leukemia/complications , Male , Radiography, Thoracic , Respiratory Tract Infections/diagnostic imaging , Respiratory Tract Infections/drug therapy , Treatment Outcome , Zygomycosis/diagnostic imaging , Zygomycosis/drug therapy
12.
Mucosal Immunol ; 9(3): 767-76, 2016 05.
Article in English | MEDLINE | ID: mdl-26442658

ABSTRACT

Mannose-binding lectin (MBL) is a soluble lectin of the innate immune system that is produced by the liver and secreted into the circulation where it activates the lectin complement pathway, enhances phagocytosis of microorganisms by leukocytes, and modulates inflammation. MBL can recognize patterns on the surface of different pathogens, including Candida albicans. Our aims were to investigate whether MBL is expressed in the gut epithelium and to examine its effect on the modulation of intestinal inflammation and C. albicans elimination. Using reverse transcriptase-PCR, MBL transcripts were highly expressed in different parts of the mouse gut. MBL expression was also detected by immunoblotting and immunolocalization in response to C. albicans colonization of the gut; the highest expression of MBL was detected in the stomach. Blocking MBL by administering mannans to mice increased C. albicans colonization. MBL-deficient mice had a higher level of colonization than wild-type mice. Dextran sodium sulfate-induced colitis promoted C. albicans dissemination to the kidneys and lungs of MBL-deficient mice. MBL-deficient mice exhibited elevated expression of interleukin (IL)-17, IL-23, dectin-1, and Toll-like receptor-4. This study shows that MBL expression is induced in the gut in response to C. albicans sensing and is required for intestinal homeostasis and host defense against C. albicans.


Subject(s)
Candida albicans/immunology , Candidiasis/immunology , Colitis/immunology , Intestinal Mucosa/metabolism , Mannose-Binding Lectin/metabolism , Animals , Cells, Cultured , Complement Pathway, Mannose-Binding Lectin , Dextran Sulfate , Female , Homeostasis , Host-Pathogen Interactions , Humans , Immunity, Mucosal , Interleukin-17/metabolism , Intestinal Mucosa/immunology , Intestinal Mucosa/microbiology , Mannose-Binding Lectin/genetics , Mice , Mice, Inbred C57BL , Mice, Knockout , Phagocytosis , Toll-Like Receptor 4/metabolism
13.
mBio ; 7(5)2016 09 20.
Article in English | MEDLINE | ID: mdl-27651359

ABSTRACT

UNLABELLED: Crohn's disease (CD) results from a complex interplay between host genetic factors and endogenous microbial communities. In the current study, we used Ion Torrent sequencing to characterize the gut bacterial microbiota (bacteriome) and fungal community (mycobiome) in patients with CD and their nondiseased first-degree relatives (NCDR) in 9 familial clusters living in northern France-Belgium and in healthy individuals from 4 families living in the same area (non-CD unrelated [NCDU]). Principal component, diversity, and abundance analyses were conducted, and CD-associated inter- and intrakingdom microbial correlations were determined. Significant microbial interactions were identified and validated using single- and mixed-species biofilms. CD and NCDR groups clustered together in the mycobiome but not in the bacteriome. Microbiotas of familial (CD and NCDR) samples were distinct from those of nonfamilial (NCDU) samples. The abundance of Serratia marcescens and Escherichia coli was elevated in CD patients, while that of beneficial bacteria was decreased. The abundance of the fungus Candida tropicalis was significantly higher in CD than in NCDR (P = 0.003) samples and positively correlated with levels of anti-Saccharomyces cerevisiae antibodies (ASCA). The abundance of C. tropicalis was positively correlated with S. marcescens and E. coli, suggesting that these organisms interact in the gut. The mass and thickness of triple-species (C. tropicalis plus S. marcescens plus E. coli) biofilm were significantly greater than those of single- and double-species biofilms. C. tropicalis biofilms comprised blastospores, while double- and triple-species biofilms were enriched in hyphae. S. marcescens used fimbriae to coaggregate or attach with C. tropicalis/E. coli, while E. coli was closely apposed with C. tropicalis Specific interkingdom microbial interactions may be key determinants in CD. IMPORTANCE: Here, we characterized the gut bacterial microbiota (bacteriome) and fungal community (mycobiome) in multiplex families with CD and healthy relatives and defined the microbial interactions leading to dysbiosis in CD. We identified fungal (Candida tropicalis) and bacterial (Serratia marcescens and Escherichia coli) species that are associated with CD dysbiosis. Additionally, we found that the level of anti-Saccharomyces cerevisiae antibodies (ASCA; a known CD biomarker) was associated with the abundance of C. tropicalis We also identified positive interkingdom correlations between C. tropicalis, E. coli, and S. marcescens in CD patients and validated these correlations using in vitro biofilms. These results provide insight into the roles of bacteria and fungi in CD and may lead to the development of novel treatment approaches and diagnostic assays.


Subject(s)
Crohn Disease/microbiology , Dysbiosis/microbiology , Gastrointestinal Microbiome , Microbial Interactions , Mycobiome , Adult , Biofilms/growth & development , Candida tropicalis/isolation & purification , Crohn Disease/genetics , Escherichia coli/isolation & purification , Feces/microbiology , Female , Fimbriae, Bacterial , France , Healthy Volunteers , Humans , Hyphae/isolation & purification , Male , Middle Aged , Saccharomyces cerevisiae/immunology , Serratia marcescens/isolation & purification
14.
Ann Biol Clin (Paris) ; 63(5): 547-52, 2005.
Article in French | MEDLINE | ID: mdl-16230295

ABSTRACT

Beside immunodepression induced by the human immunodeficiency virus, fungal infections of the central nervous system are extremely rare in heroin-addict patients. We report here a case of meningo-encephalitis with myelo-radicular lesions in a 25-year-old intravenous heroin addict but non-HIV patient, who was admitted for an acute confusion associated with gait disorders. The diagnosis of Candida albicans meningo-encephalo-myelo-radiculitis was established by magnetic resonance imagery and mycological and serological examinations of cerebrospinal fluid. The infection was cured with amphotericin B lipid complex and 5-fluorocytosine. Early diagnosis and antifungal therapy for 6 months resulted in a favorable outcome. The detection of circulating Candida mannan in cerebrospinal fluid with a more sensitive technique combined to MRI were particularly decisive to confirm Candida infection diagnosis, allowing an appropriate antifungal therapy.


Subject(s)
Candidiasis/diagnosis , Heroin Dependence/complications , Meningitis, Fungal/microbiology , Radiculopathy/microbiology , Adult , Antifungal Agents/therapeutic use , Candidiasis/complications , Heroin Dependence/microbiology , Humans , Magnetic Resonance Imaging , Male , Meningitis, Fungal/complications , Radiculopathy/complications , Treatment Outcome
15.
Clin Microbiol Infect ; 21(1): 88.e1-6, 2015 Jan.
Article in English | MEDLINE | ID: mdl-25636941

ABSTRACT

The diagnosis of systemic Candida infections is a recognized challenge. We developed a mass spectrometry strategy to detect signals from Candida molecules in patients' sera. Pre-analytical procedures were designed to extract oligosaccharides from serum. A peak m/z of at 365 was specifically revealed in sera from patients with candidaemia with regard to healthy controls. This biomarker was identified as a disaccharide, its presence did not correlate with mannanaemia or glucanaemia. Mouse models of Candida albicans colonization and infection showed that the signal was specifically associated with tissue invasion, suggesting that clinical evaluation of its usefulness in discriminating colonized and infected patients would be worthwhile.


Subject(s)
Biomarkers/blood , Candidiasis, Invasive/blood , Candidiasis, Invasive/diagnosis , Disaccharides/blood , Mycology/methods , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods , Adult , Aged , Animals , Candida albicans , Candidiasis, Invasive/epidemiology , Disease Models, Animal , Female , Humans , Male , Mice , Mice, Inbred C57BL , Middle Aged
16.
Clin Microbiol Infect ; 21(1): 87.e1-87.e10, 2015 Jan.
Article in English | MEDLINE | ID: mdl-25636940

ABSTRACT

A prospective, observational, multicentre study of invasive candidosis (IC) in surgical patients in intensive care units (ICUs) was conducted from 2006 to 2008 in 72 ICUs in 14 European countries. A total of 779 patients (62.5% males, median age 63 years) with IC were included. The median rate of candidaemia was 9 per 1000 admissions. In 10.8% the infection was already present at the time of admission to ICU. Candida albicans accounted for 54% of the isolates, followed by Candida parapsilosis 18.5%, Candida glabrata 13.8%, Candida tropicalis 6%, Candida krusei 2.5%, and other species 5.3%. Infections due to C. krusei (57.9%) and C. glabrata (43.6%) had the highest crude mortality rate. The most common preceding surgery was abdominal (51.5%), followed by thoracic (20%) and neurosurgery (8.2%). Candida glabrata was more often isolated after abdominal surgery in patients ≥60 years, and C. parapsilosis was more often isolated in neurosurgery and multiple trauma patients as well as children ≤1 year of age. The most common first-line treatment was fluconazole (60%), followed by caspofungin (18.7%), liposomal amphotericin B (13%), voriconazole (4.8%) and other drugs (3.5%). Mortality in surgical patients with IC in ICU was 38.8%. Multivariate analysis showed that factors independently associated with mortality were: patient age ≥60 years (hazard ratio (HR) 1.9, p 0.001), central venous catheter (HR 1.8, p 0.05), corticosteroids (HR 1.5, p 0.03), not receiving systemic antifungal treatment for IC (HR 2.8, p <0.0001), and not removing intravascular lines (HR 1.6, p 0.02).


Subject(s)
Candida , Candidiasis, Invasive/epidemiology , Intensive Care Units/statistics & numerical data , Surgical Procedures, Operative/statistics & numerical data , Adolescent , Adult , Aged , Aged, 80 and over , Antibiotic Prophylaxis , Antifungal Agents/therapeutic use , Candidiasis, Invasive/drug therapy , Candidiasis, Invasive/prevention & control , Child , Child, Preschool , Female , Humans , Infant , Infant, Newborn , Male , Middle Aged , Prospective Studies , Young Adult
17.
Inflamm Bowel Dis ; 7(3): 192-201, 2001 Aug.
Article in English | MEDLINE | ID: mdl-11515844

ABSTRACT

BACKGROUND: The sensitivity of assays for antineutrophil cytoplasmic antibody (ANCA), anti-Saccharomyces cerevisiae antibody (ASCA), and antipancreatic antibody (PAB) in different laboratories is unknown. Likewise, the sensitivity and diagnostic usefulness of these assays in patients with inflammatory bowel disease (IBD) in the community is unknown. METHODS: An incidence cohort of 290 patients with IBD were offered participation in the study. Blood was obtained from 162 patients (56%) (83 with ulcerative colitis, 79 with Crohn's disease) who agreed to participate. ANCA was determined in five laboratories. ASCA in two laboratories, and PAB in one laboratory. RESULTS: In ulcerative colitis, the sensitivity of ANCA determined in five laboratories varied widely, ranging from 0-63%. In Crohn's disease, the sensitivity of ASCA determined in two laboratories did not vary significantly, ranging from 39-44%; and the sensitivity of PAB determined in one laboratory was 15%. The optimal diagnostic usefulness was obtained from one laboratory where the positive predictive values of a positive ANCA assay combined with a negative ASCA assay for ulcerative colitis, and a negative ANCA combined with a positive ASCA for Crohn's disease, were 75% and 86%, respectively. CONCLUSIONS: In patients with IBD, the sensitivity of ANCA varied widely in different laboratories, whereas the prevalence of ASCA was similar. The positive predictive values of the ANCA assay combined with the ASCA assay for ulcerative colitis and Crohn's disease are high enough to be clinically useful.


Subject(s)
Antibodies, Antineutrophil Cytoplasmic/blood , Antibodies, Fungal/blood , Colitis, Ulcerative/immunology , Crohn Disease/immunology , Saccharomyces cerevisiae/immunology , Adolescent , Adult , Aged , Aged, 80 and over , Biomarkers/blood , Child , Cohort Studies , Enzyme-Linked Immunosorbent Assay , Female , Humans , Logistic Models , Male , Middle Aged , Predictive Value of Tests , Sensitivity and Specificity
18.
Bone Marrow Transplant ; 24(4): 417-20, 1999 Aug.
Article in English | MEDLINE | ID: mdl-10467332

ABSTRACT

Opportunistic fungal infection is a rare but severe complication in allogeneic bone marrow transplant (BMT) recipients. We report a 49-year-old patient who developed pneumonitis after BMT, due to a Mucorales fungus (class Zygomycetes), Absidia corymbifera. Infections due to mucormycosis are likely to become increasingly recognized even though the occurrence after BMT has only been described sporadically. We postulate that the patient was contaminated before BMT despite no intensive drug treatment or other iatrogenic features, related to his poor living conditions and developed the infection during aplasia. He immediately received i.v. liposomal amphotericin B (AmBisome) and GM-CSF. Because there was no response, the infected area and necrotic tissue were resected. Despite initial clinical and biological improvement and the absence of Mucor on mycological examination post-surgery, the patient died 3 weeks later from bilateral pulmonary infection and multiorgan failure.


Subject(s)
Absidia , Amphotericin B/therapeutic use , Antifungal Agents/therapeutic use , Bone Marrow Transplantation , Granulocyte-Macrophage Colony-Stimulating Factor/therapeutic use , Leukemia, Myelogenous, Chronic, BCR-ABL Positive/therapy , Lung Diseases, Fungal/drug therapy , Mucormycosis/drug therapy , Opportunistic Infections/drug therapy , Postoperative Complications , Fatal Outcome , Humans , Lung Diseases, Fungal/pathology , Lung Diseases, Fungal/surgery , Male , Middle Aged , Mucormycosis/pathology , Mucormycosis/surgery , Multiple Organ Failure , Necrosis , Opportunistic Infections/pathology , Opportunistic Infections/surgery , Transplantation, Homologous
19.
J Clin Pathol ; 57(2): 196-8, 2004 Feb.
Article in English | MEDLINE | ID: mdl-14747450

ABSTRACT

Candida spp are the fourth most common group of nosocomial pathogens isolated from patients on medical, surgical, and intensive care wards. Polymicrobial candidaemia has rarely been described. The diagnosis of candidaemia from peripheral blood smears has not been widely reported. This report describes the case of a young woman suffering from Ewing's sarcoma who developed a syndrome of septic shock. Deep fungal infection was diagnosed from a systematic peripheral blood smear and yeasts were isolated within 24 hours. A subculture on CHROMagar Candida allowed the differentiation and presumptive identification of Candida tropicalis and Candida krusei. Species identification was confirmed by the ID 32C system. This report underlines the usefulness of peripheral blood smears in the diagnosis of fulminant deep fungal infections, and of a differential isolation medium in the rapid presumptive identification of clinically important yeast species from clinical samples. This medium is particularly useful for the detection of mixed fungal infections, allowing early and better adapted antifungal treatment.


Subject(s)
Candidiasis/diagnosis , Cross Infection/diagnosis , Fungemia/diagnosis , Adolescent , Candidiasis/microbiology , Chromogenic Compounds , Culture Media , Fatal Outcome , Female , Fungemia/microbiology , Humans , Sarcoma, Ewing/complications
20.
Am J Trop Med Hyg ; 63(1-2): 61-3, 2000.
Article in English | MEDLINE | ID: mdl-11357997

ABSTRACT

A case of chromomycosis from Comoro Islands was first treated without success with high doses of oral amphotericin B (3 g per day). Treatment with itraconazole (400 mg per day) was also unsuccessful. Then, in vitro tests were done to study the susceptibility of this Fonsecaea pedrosoi strain to antifungal drugs. It was resistant to itraconazole, sensitive to 5-fluorocytosine, and the combination of 5-fluorocytosine with amphotericin B was synergistic. The patient was then treated with this last combination of drugs, which seemed to be effective. The patient stopped this treatment after six months, and relapse occurred two years later. The best therapeutic strategy in cases of chromomycosis seems to be a combination of two drugs chosen according to the results of prior antifungal susceptibility testing.


Subject(s)
Amphotericin B/therapeutic use , Antifungal Agents/therapeutic use , Chromoblastomycosis/therapy , Cryotherapy , Flucytosine/therapeutic use , Foot Dermatoses/therapy , Aged , Amphotericin B/pharmacology , Antifungal Agents/pharmacology , Chromoblastomycosis/pathology , Combined Modality Therapy , Drug Resistance, Microbial , Female , Flucytosine/pharmacology , Foot Dermatoses/pathology , Fungi/drug effects , Humans
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